Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 9.7e-190 666.8 365 100.0
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 1.8e-180 636.0 365 96.4
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 4.6e-123 445.3 293 86.0
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 1.6e-67 260.8 321 54.8
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 1.8e-66 257.3 218 65.1
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 5.7e-65 252.3 270 57.8
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 4.4e-41 172.9 171 52.6
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 3.7e-40 169.9 164 51.2
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 2.7e-38 163.7 166 52.4
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 1.3e-37 161.4 162 55.6
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 2.8e-35 153.7 174 47.7
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 2.8e-35 153.7 152 50.0
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 3.6e-35 153.3 167 48.5
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 8.0e-35 152.1 186 51.6
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 2.3e-34 150.6 141 51.1
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 2.3e-34 150.6 201 44.8
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 4.0e-34 149.8 165 49.1
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 1.2e-33 148.3 161 48.4
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 3.4e-33 146.7 164 49.4
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 3.4e-33 146.7 176 46.6
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 9.8e-33 145.2 155 47.7
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 9.8e-33 145.2 175 44.0
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 1.3e-32 144.8 153 45.8
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 1.3e-32 144.8 153 45.8
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 2.2e-32 144.1 134 52.2
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 2.2e-32 144.1 196 40.3
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 6.4e-32 142.5 141 46.1
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 6.4e-32 142.5 153 44.4
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 1.4e-31 141.4 158 46.8
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 1.4e-31 141.4 242 40.5
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.4e-31 140.6 144 47.2
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 4.1e-31 139.8 206 38.8
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 5.4e-31 139.4 173 46.2
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.6e-30 137.9 142 45.1
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 7.8e-30 135.6 131 54.2
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 1.0e-29 135.2 160 47.5
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.0e-29 135.2 181 42.5
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.3e-29 134.8 135 45.9
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.3e-29 134.8 189 40.7
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 1.7e-29 134.4 163 46.6
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 4.3e-28 129.8 158 41.8
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 4.3e-28 129.8 156 45.5
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 2.8e-27 127.1 140 48.6
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 3.1e-26 123.6 133 47.4
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 5.2e-26 122.9 135 48.9
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 6.8e-26 122.5 140 46.4
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 6.8e-26 122.5 155 45.2
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 8.9e-26 122.1 139 47.5
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 1.2e-25 121.7 172 44.2
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 1.5e-25 121.3 169 37.3
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 2.0e-25 120.9 168 38.1
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 2.6e-25 120.6 180 41.1
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 2.6e-25 120.6 136 46.3
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 3.4e-25 120.2 180 40.6
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 4.4e-25 119.8 192 38.0
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 5.8e-25 119.4 187 40.1
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 5.8e-25 119.4 187 40.1
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 5.8e-25 119.4 164 44.5
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 7.5e-25 119.0 135 46.7
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 9.8e-25 118.6 146 45.9
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 1.3e-24 118.2 135 48.9
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.3e-24 118.2 127 49.6
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 2.9e-24 117.1 135 46.7
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 3.7e-24 116.7 187 39.0
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 4.9e-24 116.3 138 45.7
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 4.9e-24 116.3 157 42.7
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 6.4e-24 115.9 133 46.6
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 6.4e-24 115.9 113 46.9
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 6.4e-24 115.9 168 42.3
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 1.4e-23 114.8 133 46.6
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 1.4e-23 114.8 113 46.0
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 3.2e-23 113.6 135 45.9
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 5.4e-23 112.8 133 45.9
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 7.1e-23 112.5 142 43.7
Oeu063151.1 Olea europaea HOM05D005423 ORTHO05D006223 1.6e-22 111.3 116 52.6
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 3.5e-22 110.2 137 46.7
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 1.0e-21 108.6 183 37.7
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 1.0e-21 108.6 162 37.0
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 1.3e-21 108.2 157 38.9
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 5.1e-21 106.3 116 49.1
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 1.1e-20 105.1 91 52.7
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 4.3e-20 103.2 137 41.6
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 4.3e-20 103.2 148 42.6
AUR62007135 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.6e-19 101.3 113 46.0
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 8.1e-19 99.0 102 48.0
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 8.1e-19 99.0 155 38.7
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.1e-18 98.6 88 51.1
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.8e-18 97.8 163 35.0
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 4.0e-18 96.7 99 52.5
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.5e-17 94.7 130 40.8
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 2.0e-17 94.4 137 38.7
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 7.6e-17 92.4 128 42.2
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 7.6e-17 92.4 128 42.2
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 9.9e-17 92.0 137 38.0
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 9.9e-17 92.0 137 38.0
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.3e-16 91.7 128 41.4
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 1.7e-16 91.3 137 38.0
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 1.7e-16 91.3 137 38.0
FAN23G0143 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.7e-16 90.1 91 46.2
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 6.4e-16 89.4 124 37.9
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.4e-15 87.4 95 46.3
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 3.2e-15 87.0 95 45.3
Duzib043G0004 Durio zibethinus HOM05D005423 ORTHO05D006223 5.4e-15 86.3 137 36.5
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 7.1e-15 85.9 94 45.7
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 2.1e-14 84.3 138 37.0
FvH4_5g21920 Fragaria vesca HOM05D005423 ORTHO05D006223 7.8e-14 82.4 96 41.7
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 1.5e-12 78.2 165 32.1
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 4.3e-12 76.6 60 58.3
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 1.6e-11 74.7 99 43.4
DCAR_001448 Daucus carota HOM05D005423 ORTHO05D006223 3.6e-11 73.6 170 30.6
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 2.4e-10 70.9 60 51.7
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 2.4e-10 70.9 116 31.9
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 4.0e-10 70.1 136 32.4
A09p38220 Brassica napus HOM05D005423 ORTHO05D006223 2.6e-09 67.4 57 54.4
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 3.4e-09 67.0 184 28.3
Solyc01g057590.3 Solanum lycopersicum HOM05D030979 ORTHO05D030659 3.4e-09 67.0 132 40.9
SMO220G0003 Selaginella moellendorffii HOM05D002232 ORTHO05D002323 7.6e-09 65.9 159 30.8
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 1.3e-08 65.1 153 29.4
FAN11G1050 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.3e-08 65.1 71 47.9
PGSC0003DMG400006617 Solanum tuberosum HOM05D030979 ORTHO05D030659 1.3e-08 65.1 40 77.5
FAN18G0575 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.7e-08 64.7 70 47.1
PGSC0003DMG400046543 Solanum tuberosum HOM05D030979 ORTHO05D030659 2.2e-08 64.3 138 39.9
FAN03G0475 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.8e-08 63.5 70 47.1
FAN14G5542 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.8e-08 63.5 70 47.1
Nitab4.5_0009996g0030 Nicotiana tabacum HOM05D007205 ORTHO05D009175 4.9e-08 63.2 108 32.4
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 6.4e-08 62.8 153 29.4
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 6.4e-08 62.8 200 26.0
Pp3c1_4130 Physcomitrium patens HOM05D022662 ORTHO05D006223 6.4e-08 62.8 160 30.6
DCAR_002955 Daucus carota HOM05D005423 ORTHO05D006223 8.4e-08 62.4 80 38.8
FvH4_6g29350 Fragaria vesca HOM05D005423 ORTHO05D006223 8.4e-08 62.4 72 40.3
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 1.1e-07 62.0 153 28.8
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.4e-07 61.6 101 34.7
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 2.4e-07 60.8 137 30.7
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 5.4e-07 59.7 135 31.1
CARHR238100 Cardamine hirsuta HOM05D005423 ORTHO05D006223 1.2e-06 58.5 71 40.8
Pp3c6_3400 Physcomitrium patens HOM05D005423 ORTHO05D006223 1.2e-06 58.5 158 29.1
AL7G23530 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.6e-06 58.2 72 37.5
AL7G23570 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.6e-06 58.2 94 35.1
Prupe.3G306500 Prunus persica HOM05D002727 ORTHO05D002856 1.6e-06 58.2 135 34.1
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 2.1e-06 57.8 153 30.1
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 2.1e-06 57.8 193 28.0
CSS0002540 Camellia sinensis var. sinensis HOM05D007205 ORTHO05D009175 2.7e-06 57.4 69 31.9
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 2.7e-06 57.4 140 28.6
Pp3c3_10930 Physcomitrium patens HOM05D022662 ORTHO05D006223 3.5e-06 57.0 141 25.5
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 4.6e-06 56.6 100 34.0
arahy.Tifrunner.gnm1.ann1.A4HJXM Arachis hypogaea HOM05D002727 ORTHO05D002856 6.0e-06 56.2 111 34.2
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 6.0e-06 56.2 154 28.6
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 6.0e-06 56.2 154 28.6
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 6.0e-06 56.2 193 28.5
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 6.0e-06 56.2 152 27.6
PGR119G0434 Punica granatum HOM05D002727 ORTHO05D002856 7.8e-06 55.8 125 32.0
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 7.8e-06 55.8 128 32.0


User provided reference genes

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