Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 1.3e-99 366.3 178 100.0
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 2.9e-99 365.2 178 99.4
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 9.5e-98 360.1 178 97.2
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 7.8e-92 340.5 176 90.9
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 4.7e-89 331.3 175 89.7
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 6.6e-83 310.8 176 82.4
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 5.6e-82 307.8 177 80.8
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 2.3e-80 302.4 170 81.2
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 4.0e-80 301.6 170 79.4
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 4.0e-80 301.6 172 79.7
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 6.8e-80 300.8 175 78.3
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 1.2e-79 300.1 171 79.5
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 1.2e-79 300.1 175 78.3
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.2e-79 300.1 175 76.0
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 2.0e-79 299.3 175 78.9
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 2.6e-79 298.9 177 78.5
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 4.4e-79 298.1 173 79.2
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 5.8e-79 297.7 175 77.7
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 7.5e-79 297.4 175 78.3
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 9.9e-79 297.0 177 75.1
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 1.3e-78 296.6 170 80.6
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 1.7e-78 296.2 175 78.3
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 2.9e-78 295.4 167 80.2
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 3.7e-78 295.0 188 75.0
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 4.9e-78 294.7 170 77.1
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 4.9e-78 294.7 175 77.7
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 6.4e-78 294.3 172 77.3
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 6.4e-78 294.3 169 77.5
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 6.4e-78 294.3 175 76.6
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 8.3e-78 293.9 175 74.9
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 8.3e-78 293.9 170 76.5
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 8.3e-78 293.9 169 78.1
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.4e-77 293.1 175 74.3
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 1.4e-77 293.1 173 75.1
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 1.9e-77 292.7 173 78.0
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 1.9e-77 292.7 169 76.9
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 2.4e-77 292.4 174 75.3
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 2.4e-77 292.4 168 78.6
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 3.2e-77 292.0 175 76.6
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 3.2e-77 292.0 169 78.7
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.2e-77 292.0 169 78.7
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 3.2e-77 292.0 173 76.3
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 3.2e-77 292.0 168 79.8
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 4.1e-77 291.6 167 79.6
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 4.1e-77 291.6 173 76.3
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 5.4e-77 291.2 169 76.9
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 7.1e-77 290.8 175 77.1
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 7.1e-77 290.8 174 74.1
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 7.1e-77 290.8 172 77.3
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 7.1e-77 290.8 168 79.2
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 9.2e-77 290.4 168 79.8
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 9.2e-77 290.4 168 79.8
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 1.2e-76 290.0 177 76.3
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 1.6e-76 289.7 167 81.4
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.6e-76 289.7 169 78.1
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 1.6e-76 289.7 174 74.7
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 2.1e-76 289.3 166 78.9
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 2.7e-76 288.9 169 78.1
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 2.7e-76 288.9 174 77.0
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 3.5e-76 288.5 168 73.8
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 3.5e-76 288.5 174 76.4
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 4.6e-76 288.1 171 77.8
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 6.0e-76 287.7 170 75.9
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.0e-75 287.0 169 77.5
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 1.0e-75 287.0 176 75.6
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 1.3e-75 286.6 172 75.6
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.3e-75 286.6 169 76.3
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 2.3e-75 285.8 178 71.9
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 2.3e-75 285.8 174 74.1
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 2.3e-75 285.8 171 74.3
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 2.3e-75 285.8 177 75.1
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 3.0e-75 285.4 167 75.4
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 3.9e-75 285.0 174 73.0
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 5.1e-75 284.6 167 76.6
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 5.1e-75 284.6 167 76.6
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 6.6e-75 284.3 174 72.4
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 6.6e-75 284.3 167 77.2
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 8.6e-75 283.9 178 72.5
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 1.9e-74 282.7 174 73.6
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 1.9e-74 282.7 174 73.6
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 2.5e-74 282.3 208 64.4
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 2.5e-74 282.3 173 76.3
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 4.3e-74 281.6 172 73.3
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 7.3e-74 280.8 168 77.4
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 1.2e-73 280.0 170 74.1
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.6e-73 279.6 159 78.0
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 2.1e-73 279.3 173 73.4
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 2.8e-73 278.9 173 73.4
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 2.8e-73 278.9 178 70.8
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 4.7e-73 278.1 168 79.2
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 8.1e-73 277.3 174 71.8
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 8.1e-73 277.3 176 71.6
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 1.1e-72 276.9 175 70.9
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 1.1e-72 276.9 168 74.4
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 2.3e-72 275.8 173 73.4
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 2.3e-72 275.8 166 75.3
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 4.0e-72 275.0 173 73.4
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 4.0e-72 275.0 162 77.8
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 4.0e-72 275.0 173 72.3
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 5.2e-72 274.6 174 73.0
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 5.2e-72 274.6 168 73.2
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 6.8e-72 274.2 175 71.4
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 1.2e-71 273.5 167 71.9
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.2e-71 273.5 236 57.2
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 1.2e-71 273.5 170 71.8
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 1.5e-71 273.1 173 69.9
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 2.6e-71 272.3 174 71.3
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 4.4e-71 271.6 154 81.8
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 5.8e-71 271.2 174 70.1
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 5.8e-71 271.2 173 71.7
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 5.8e-71 271.2 158 80.4
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 7.6e-71 270.8 174 70.1
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 7.6e-71 270.8 173 69.9
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 1.3e-70 270.0 162 77.2
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 1.3e-70 270.0 162 77.2
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 3.8e-70 268.5 173 69.9
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 3.8e-70 268.5 175 69.7
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 6.4e-70 267.7 162 76.5
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 8.4e-70 267.3 162 76.5
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 1.4e-69 266.5 176 69.3
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 5.4e-69 264.6 174 68.4
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 9.2e-69 263.8 184 66.8
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 1.7e-67 259.6 168 67.9
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 9.6e-66 253.8 168 67.9
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 2.1e-65 252.7 178 64.6
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 3.6e-65 251.9 177 70.1
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 2.4e-64 249.2 156 74.4
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 4.0e-64 248.4 163 66.9
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 5.8e-63 244.6 168 70.2
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 7.6e-63 244.2 168 66.7
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 5.4e-61 238.0 167 63.5
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 1.6e-60 236.5 162 64.8
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 2.4e-56 222.6 169 59.8
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 3.8e-54 215.3 158 67.1
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 1.9e-53 213.0 165 56.4
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 1.3e-51 206.8 102 94.1
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 3.0e-51 205.7 171 52.6
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 1.1e-50 203.8 102 94.1
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 4.8e-49 198.4 114 79.8
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 4.9e-46 188.3 116 77.6
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 4.9e-46 188.3 123 68.3
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 2.1e-44 183.0 179 59.8
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 6.7e-43 177.9 178 47.2
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 6.7e-43 177.9 167 54.5
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 3.3e-42 175.6 115 69.6
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 9.6e-42 174.1 107 72.0
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 1.6e-41 173.3 111 70.3
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 1.6e-41 173.3 111 70.3
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 4.8e-41 171.8 101 75.2
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 6.9e-40 167.9 176 53.4
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 6.5e-38 161.4 103 70.9
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.3e-35 153.7 85 80.0
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 1.6e-28 130.2 126 53.2
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 2.7e-28 129.4 154 40.9
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 2.3e-27 126.3 79 68.4
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 1.5e-26 123.6 144 49.3
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 5.1e-19 98.6 68 70.6
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 2.6e-18 96.3 63 66.7
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 6.3e-17 91.7 67 59.7
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 1.1e-16 90.9 186 29.0
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.4e-16 90.5 67 61.2
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 3.8e-14 82.4 68 58.8
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 8.5e-14 81.3 79 48.1
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 4.4e-10 68.9 35 82.9
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.4e-08 63.9 48 64.6


User provided reference genes

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