Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 3.0e-132 475.3 260 100.0
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 4.0e-129 464.9 260 98.1
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 1.1e-121 440.3 255 94.9
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 1.9e-115 419.5 263 89.7
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 1.5e-104 383.3 264 82.2
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.3e-100 370.2 272 78.7
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 1.5e-91 340.1 266 75.9
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 3.7e-90 335.5 267 74.5
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.8e-89 333.2 267 74.2
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 7.6e-88 327.8 261 73.9
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 1.9e-83 313.2 254 70.5
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 3.1e-81 305.8 263 67.7
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 5.3e-81 305.1 261 68.2
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 6.9e-81 304.7 263 67.7
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 1.5e-80 303.5 265 66.8
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 3.4e-80 302.4 254 68.9
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 4.5e-80 302.0 264 67.0
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 7.6e-80 301.2 254 68.5
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.0e-79 300.8 254 68.9
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.3e-79 300.4 254 68.9
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 1.7e-79 300.1 254 68.9
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 2.2e-79 299.7 254 68.1
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 7.1e-78 294.7 275 65.1
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 2.1e-77 293.1 254 67.7
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 6.0e-77 291.6 257 68.9
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 7.9e-77 291.2 249 67.9
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 7.9e-77 291.2 254 65.4
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 1.0e-76 290.8 272 64.7
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 5.1e-76 288.5 254 66.1
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 4.3e-75 285.4 262 65.6
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 5.7e-75 285.0 254 66.1
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 5.7e-75 285.0 261 64.0
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 1.3e-74 283.9 261 63.6
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 1.3e-74 283.9 254 65.7
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 1.6e-74 283.5 253 64.8
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 4.8e-74 282.0 255 67.1
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 1.1e-73 280.8 268 63.8
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.4e-73 280.4 257 63.4
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 5.3e-73 278.5 254 64.2
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 1.2e-72 277.3 254 63.8
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 1.5e-72 276.9 265 66.0
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 7.6e-72 274.6 252 64.7
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.3e-71 273.9 254 64.6
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 2.9e-71 272.7 254 63.4
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 2.9e-71 272.7 253 62.8
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 3.8e-71 272.3 314 56.4
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 5.0e-71 271.9 257 63.4
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 5.0e-71 271.9 250 62.8
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.9e-70 270.0 248 63.7
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 4.2e-70 268.9 253 63.2
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 2.1e-69 266.5 252 61.9
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 2.7e-69 266.2 255 62.7
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 7.9e-69 264.6 255 61.6
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 1.0e-68 264.2 255 61.2
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 1.3e-68 263.8 252 62.3
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 1.3e-68 263.8 227 69.2
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 1.3e-68 263.8 287 57.5
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 3.0e-68 262.7 255 60.8
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 5.1e-68 261.9 255 60.8
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 6.7e-68 261.5 253 62.5
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 6.7e-68 261.5 290 55.2
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 1.1e-67 260.8 254 61.4
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 1.9e-67 260.0 251 60.6
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 1.9e-67 260.0 266 60.5
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.9e-67 260.0 257 59.5
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 1.9e-67 260.0 257 59.9
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.5e-67 259.6 257 59.5
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 5.7e-67 258.5 257 59.1
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 5.7e-67 258.5 253 61.7
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 9.7e-67 257.7 256 60.9
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 9.7e-67 257.7 251 62.5
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 3.7e-66 255.8 257 58.0
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 3.7e-66 255.8 256 59.0
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.4e-65 253.8 254 57.9
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 1.8e-65 253.4 264 61.0
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 1.8e-65 253.4 253 61.7
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 2.4e-65 253.1 256 57.8
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 3.1e-65 252.7 247 61.9
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 6.9e-65 251.5 255 62.7
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 6.9e-65 251.5 230 66.5
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 9.1e-65 251.1 256 60.2
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 9.1e-65 251.1 263 60.1
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 1.2e-64 250.8 251 59.0
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.5e-64 250.4 256 58.2
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 5.9e-64 248.4 253 60.9
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 1.0e-63 247.7 247 61.1
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.0e-63 247.7 248 60.9
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 3.8e-63 245.7 251 58.6
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 5.0e-63 245.4 252 57.1
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 1.9e-62 243.4 253 58.1
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 1.9e-62 243.4 251 57.8
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 2.5e-62 243.0 247 60.3
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 4.2e-62 242.3 251 58.2
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 5.5e-62 241.9 251 59.4
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 9.4e-62 241.1 161 80.1
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 2.1e-61 240.0 250 59.2
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 2.7e-61 239.6 256 57.8
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 7.9e-61 238.0 251 57.0
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 1.4e-60 237.3 254 58.3
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 1.8e-60 236.9 249 59.4
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 3.0e-60 236.1 263 57.8
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 1.5e-59 233.8 253 56.9
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 1.5e-59 233.8 246 57.7
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 4.8e-58 228.8 263 54.8
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 8.2e-58 228.0 160 77.5
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 1.4e-57 227.3 260 56.9
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 1.4e-57 227.3 151 81.5
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 3.1e-57 226.1 255 54.5
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 1.3e-55 220.7 226 60.2
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 5.0e-55 218.8 183 69.4
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.1e-54 217.6 309 46.9
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 4.2e-54 215.7 379 42.2
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 2.1e-53 213.4 219 62.1
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 8.8e-52 208.0 175 70.3
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 4.4e-51 205.7 273 50.2
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 2.8e-50 203.0 206 64.1
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 1.0e-47 194.5 251 50.2
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 9.4e-46 188.0 276 45.3
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 1.5e-43 180.6 219 52.5
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 1.4e-41 174.1 248 44.8
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 2.9e-39 166.4 252 46.8
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 4.2e-38 162.5 279 40.5
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.8e-36 157.1 196 53.6
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 1.5e-35 154.1 99 79.8
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 3.1e-33 146.4 182 53.8
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 5.9e-32 142.1 269 43.5
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.7e-31 140.6 96 76.0
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 2.5e-30 136.7 188 50.0
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 1.4e-28 131.0 171 49.7
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 2.3e-28 130.2 181 51.4
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 2.3e-20 103.6 123 45.5
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 9.8e-19 98.2 104 56.7
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 6.4e-18 95.5 228 39.5
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 9.2e-17 91.7 151 43.7
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 1.2e-16 91.3 65 75.4
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.2e-16 91.3 66 65.2
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 8.6e-15 85.1 54 85.2
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 3.6e-13 79.7 132 42.4
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 4.7e-13 79.3 142 42.3
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 2.6e-11 73.6 109 43.1
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 5.8e-11 72.4 169 33.7
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 1.3e-10 71.2 63 61.9
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 1.9e-09 67.4 83 47.0
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 2.1e-08 63.9 37 73.0
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 5.6e-06 55.8 121 38.8


User provided reference genes

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