Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 6.6e-235 817.0 414 100.0
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.4e-229 799.3 414 98.1
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 3.2e-157 558.9 421 69.8
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.5e-114 417.2 422 56.2
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.6e-87 327.4 456 46.7
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 2.8e-84 316.6 524 42.0
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.2e-66 258.1 543 35.7
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 8.7e-62 241.9 559 34.0
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 7.4e-45 185.7 575 28.3
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 1.1e-43 181.8 575 28.3
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.4e-43 181.4 575 28.5
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 3.8e-41 173.3 569 26.7
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 2.5e-32 144.1 453 32.9
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 2.0e-18 97.8 196 31.6
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 2.0e-18 97.8 256 29.7
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 1.0e-17 95.5 338 23.7
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.7e-17 94.7 149 34.2
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 1.5e-16 91.7 416 25.5
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.9e-16 91.3 343 25.1
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 2.5e-16 90.9 108 40.7
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 4.3e-16 90.1 179 32.4
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 1.2e-15 88.6 463 23.8
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 4.7e-15 86.7 189 27.5
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 6.1e-15 86.3 127 40.9
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.8e-14 84.7 106 38.7
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.8e-14 84.7 395 25.1
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 1.8e-14 84.7 188 30.9
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.2e-13 82.0 203 29.1
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 1.5e-13 81.6 447 23.0
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.0e-13 81.3 372 23.9
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 3.4e-13 80.5 336 24.4
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 3.4e-13 80.5 104 37.5
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 4.4e-13 80.1 429 23.1
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 5.7e-13 79.7 111 36.0
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 5.7e-13 79.7 109 41.3
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 9.8e-13 79.0 130 39.2
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 1.3e-12 78.6 428 23.6
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 1.3e-12 78.6 255 29.4
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 1.7e-12 78.2 414 25.4
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 1.7e-12 78.2 172 29.1
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 2.9e-12 77.4 109 39.4
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 3.7e-12 77.0 384 23.7
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 4.9e-12 76.6 98 37.8
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 4.9e-12 76.6 349 25.8
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 6.4e-12 76.3 270 27.4
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 6.4e-12 76.3 477 20.8
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 6.4e-12 76.3 129 34.1
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 8.3e-12 75.9 112 34.8
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 8.3e-12 75.9 94 39.4
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 1.1e-11 75.5 189 26.5
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.4e-11 75.1 105 39.0
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 1.4e-11 75.1 115 33.9
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 2.4e-11 74.3 387 25.1
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 3.2e-11 73.9 108 32.4
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 4.1e-11 73.6 109 34.9
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 4.1e-11 73.6 375 23.2
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 5.4e-11 73.2 103 34.0
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 5.4e-11 73.2 220 25.5
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 9.2e-11 72.4 498 22.1
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 9.2e-11 72.4 103 38.8
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 9.2e-11 72.4 105 32.4
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 1.2e-10 72.0 98 36.7
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 1.2e-10 72.0 103 36.9
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 1.6e-10 71.6 109 34.9
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 2.0e-10 71.2 122 32.8
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 2.7e-10 70.9 98 34.7
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 2.7e-10 70.9 98 34.7
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 2.7e-10 70.9 121 32.2
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 2.7e-10 70.9 114 36.0
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 2.7e-10 70.9 114 36.0
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 3.5e-10 70.5 100 35.0
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 3.5e-10 70.5 346 22.3
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 4.6e-10 70.1 100 38.0
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 4.6e-10 70.1 100 35.0
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 4.6e-10 70.1 396 24.0
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 4.6e-10 70.1 109 31.2
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 5.9e-10 69.7 118 31.4
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 5.9e-10 69.7 180 26.7
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 5.9e-10 69.7 391 21.5
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 5.9e-10 69.7 201 27.9
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 5.9e-10 69.7 342 23.1
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 7.8e-10 69.3 200 27.0
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.3e-09 68.6 105 34.3
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 1.3e-09 68.6 105 34.3
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 1.3e-09 68.6 106 36.8
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 1.7e-09 68.2 91 41.8
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 1.7e-09 68.2 156 28.8
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 2.3e-09 67.8 111 31.5
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 3.0e-09 67.4 105 34.3
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 3.0e-09 67.4 105 34.3
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 3.0e-09 67.4 113 35.4
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 3.0e-09 67.4 282 22.7
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 3.0e-09 67.4 89 39.3
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 3.0e-09 67.4 106 34.0
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 3.9e-09 67.0 80 41.2
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 3.9e-09 67.0 109 33.0
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 5.0e-09 66.6 82 45.1
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 8.6e-09 65.9 113 37.2
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 8.6e-09 65.9 112 32.1
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 8.6e-09 65.9 390 21.3
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 8.6e-09 65.9 343 25.1
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.1e-08 65.5 101 36.6
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.1e-08 65.5 98 33.7
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 1.1e-08 65.5 381 23.6
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 1.5e-08 65.1 105 33.3
Nitab4.5_0000317g0090 Nicotiana tabacum HOM05D020480 ORTHO05D003486 1.5e-08 65.1 512 23.6
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 1.5e-08 65.1 118 28.8
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 1.9e-08 64.7 109 34.9
Peaxi162Scf00066g00424 Petunia axillaris HOM05D020480 ORTHO05D003486 2.5e-08 64.3 420 24.3
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 4.3e-08 63.5 195 27.7
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 5.6e-08 63.2 209 28.7
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 5.6e-08 63.2 111 29.7
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 7.3e-08 62.8 110 34.5
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 7.3e-08 62.8 114 28.1
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 7.3e-08 62.8 106 34.0
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 9.5e-08 62.4 251 26.3
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 9.5e-08 62.4 110 32.7
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.2e-07 62.0 105 34.3
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 1.2e-07 62.0 96 36.5
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 1.2e-07 62.0 218 27.1
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 1.6e-07 61.6 118 29.7
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 1.6e-07 61.6 71 43.7
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 1.6e-07 61.6 59 45.8
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 2.1e-07 61.2 110 33.6
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 2.8e-07 60.8 171 28.7
SEGI_27702 Sequoiadendron giganteum HOM05D002377 ORTHO05D003486 2.8e-07 60.8 96 34.4
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 3.6e-07 60.5 119 30.3
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 3.6e-07 60.5 112 29.5
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 3.6e-07 60.5 73 39.7
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 4.7e-07 60.1 131 31.3
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 6.2e-07 59.7 129 30.2
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 6.2e-07 59.7 155 27.1
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 6.2e-07 59.7 342 24.0
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 8.0e-07 59.3 449 22.0
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.8e-06 58.2 105 29.5
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 1.8e-06 58.2 418 22.5
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 2.3e-06 57.8 110 32.7
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 2.3e-06 57.8 354 22.3
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 2.3e-06 57.8 207 27.5
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 2.3e-06 57.8 104 34.6
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.3e-06 57.8 54 48.1
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.3e-06 57.8 54 48.1
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 3.1e-06 57.4 129 29.5
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 3.1e-06 57.4 343 23.6
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 4.0e-06 57.0 329 22.8
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 5.2e-06 56.6 101 30.7
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 5.2e-06 56.6 363 22.9
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 5.2e-06 56.6 154 32.5
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 6.8e-06 56.2 111 30.6
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 8.9e-06 55.8 101 29.7


User provided reference genes

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