Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 1.5e-232 809.3 462 100.0
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 5.8e-232 807.4 462 99.8
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 1.5e-227 792.7 462 98.3
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 3.5e-221 771.5 462 94.8
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 5.0e-207 724.5 463 89.6
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 6.7e-196 687.6 461 86.6
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 2.2e-191 672.5 461 83.5
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 6.5e-191 671.0 461 83.5
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 8.5e-191 670.6 461 83.5
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 9.7e-187 657.1 459 80.6
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.3e-186 656.8 459 82.1
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 3.7e-186 655.2 459 83.0
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 4.8e-186 654.8 459 82.8
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 8.2e-186 654.1 461 82.4
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 3.5e-184 648.7 463 80.6
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 9.4e-182 640.6 462 80.5
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 2.1e-181 639.4 462 80.3
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 4.7e-181 638.3 462 80.5
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 8.0e-181 637.5 462 79.2
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.3e-180 636.0 459 77.1
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 3.0e-180 635.6 461 79.6
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 5.2e-180 634.8 462 78.8
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 4.4e-179 631.7 462 79.7
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 5.7e-179 631.3 462 80.1
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.7e-178 629.8 462 76.8
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 3.7e-178 628.6 459 78.9
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 8.3e-178 627.5 462 76.8
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 1.8e-177 626.3 462 79.2
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 1.8e-177 626.3 466 77.0
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 5.4e-177 624.8 465 78.1
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 2.7e-176 622.5 459 76.5
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 3.5e-176 622.1 477 76.1
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 1.0e-175 620.5 465 77.4
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 5.0e-175 618.2 460 76.1
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 1.1e-174 617.1 459 76.7
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 1.5e-174 616.7 461 78.1
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 2.5e-174 615.9 463 77.5
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 4.2e-174 615.1 464 78.2
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 5.5e-174 614.8 483 74.3
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 1.6e-173 613.2 492 73.4
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 3.6e-173 612.1 463 75.4
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 4.7e-173 611.7 462 76.8
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 8.0e-173 610.9 465 70.8
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 1.4e-172 610.1 457 75.7
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 1.8e-172 609.8 460 75.0
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 3.0e-172 609.0 462 75.8
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 2.6e-171 605.9 464 77.6
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 2.6e-171 605.9 461 75.7
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 4.4e-171 605.1 464 77.6
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 4.4e-171 605.1 460 77.2
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 5.7e-171 604.7 461 77.7
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 3.7e-170 602.1 460 76.7
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 4.9e-170 601.7 459 77.1
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 6.3e-170 601.3 460 75.7
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 1.1e-169 600.5 441 79.8
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 1.1e-169 600.5 462 75.5
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 2.4e-169 599.4 462 76.0
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 4.1e-169 598.6 462 75.1
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 5.4e-169 598.2 462 76.2
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.2e-168 597.0 463 71.7
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 4.5e-168 595.1 459 75.4
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 5.9e-168 594.7 460 76.1
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 1.3e-167 593.6 460 77.2
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 2.3e-167 592.8 460 68.3
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 2.3e-167 592.8 460 68.3
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 8.6e-167 590.9 459 72.8
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 8.6e-167 590.9 460 75.2
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 1.5e-166 590.1 462 75.8
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 4.3e-166 588.6 505 64.4
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 7.3e-166 587.8 462 73.2
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 7.3e-166 587.8 459 74.3
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 7.3e-166 587.8 459 74.5
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 3.0e-164 582.4 462 73.2
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.0e-164 582.0 462 73.2
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 4.0e-164 582.0 465 73.8
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 8.9e-164 580.9 455 73.8
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 1.2e-163 580.5 455 74.7
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 3.4e-163 578.9 462 73.4
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 4.4e-163 578.6 462 72.9
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.4e-163 578.6 462 72.5
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 9.8e-163 577.4 461 72.2
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 1.3e-162 577.0 455 73.6
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 2.2e-162 576.2 455 73.4
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 3.7e-162 575.5 455 73.2
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 5.4e-161 571.6 461 72.0
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 7.0e-161 571.2 466 71.5
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 1.3e-159 567.0 465 66.0
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 8.6e-159 564.3 461 72.5
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 1.6e-157 560.1 387 72.9
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 3.6e-157 558.9 389 72.2
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.3e-154 550.4 462 71.2
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 2.9e-154 549.3 389 72.2
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 2.9e-154 549.3 387 71.3
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.9e-154 548.5 462 71.2
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 6.4e-154 548.1 462 70.6
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 1.1e-153 547.4 461 71.1
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 9.2e-153 544.3 462 71.0
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 9.2e-153 544.3 462 70.1
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 5.0e-151 538.5 462 63.9
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.1e-150 537.3 551 62.4
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 2.5e-150 536.2 462 68.6
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.3e-150 535.4 462 69.3
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 2.1e-149 533.1 389 70.4
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 6.8e-148 528.1 460 68.0
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 7.1e-145 518.1 458 68.1
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 3.5e-144 515.8 463 59.8
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 1.6e-141 506.9 495 65.3
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 4.7e-141 505.4 409 75.8
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 5.4e-137 491.9 460 67.0
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.2e-136 490.7 462 64.9
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 1.6e-133 480.3 464 63.6
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 2.4e-129 466.5 384 72.7
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 3.1e-116 422.9 365 62.2
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 7.1e-113 411.8 463 56.4
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 9.6e-110 401.4 467 52.5
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 4.8e-101 372.5 461 50.8
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 2.9e-98 363.2 301 65.1
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 2.3e-95 353.6 314 64.6
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 7.4e-78 295.4 292 67.1
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.5e-65 253.8 394 40.1
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 5.2e-63 246.1 390 40.0
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.7e-58 231.1 242 53.7
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 2.9e-58 230.3 189 67.7
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 5.9e-51 206.1 505 40.6
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.6e-48 198.0 158 67.1
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 1.8e-47 194.5 163 62.6
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 7.5e-46 189.1 123 74.8
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 1.0e-42 178.7 397 30.5
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 6.4e-37 159.5 510 33.9
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 1.1e-36 158.7 121 69.4
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 2.8e-32 144.1 135 61.5
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.4e-28 131.0 156 51.9
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 9.2e-20 102.4 68 76.5
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 2.1e-19 101.3 222 36.0
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 7.3e-17 92.8 91 59.3
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 2.1e-16 91.3 75 69.3
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 6.2e-16 89.7 100 81.0
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.8e-15 88.2 55 81.8
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 1.2e-11 75.5 60 60.0
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 2.3e-10 71.2 59 64.4
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 5.1e-10 70.1 62 56.5
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 6.6e-10 69.7 61 55.7
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 1.1e-09 68.9 71 50.7
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 1.9e-09 68.2 97 46.4
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 1.3e-08 65.5 49 73.5
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.3e-08 65.5 97 43.3
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 7.6e-06 56.2 113 38.9


User provided reference genes

Program Settings