Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 2.9e-103 378.6 201 100.0
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 6.1e-101 370.9 201 97.5
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 1.4e-92 343.2 203 91.6
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 4.5e-80 301.6 199 75.4
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 3.8e-79 298.5 203 72.4
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 1.8e-76 289.7 137 97.1
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 5.3e-73 278.1 189 71.4
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 3.2e-70 268.9 195 65.1
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 8.0e-69 264.2 198 65.2
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.0e-68 263.8 199 65.3
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 2.3e-68 262.7 195 66.2
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 2.3e-68 262.7 195 65.6
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 2.6e-67 259.2 205 61.0
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 5.7e-67 258.1 198 65.2
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 7.5e-67 257.7 201 61.7
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 7.5e-67 257.7 195 64.1
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 7.5e-67 257.7 195 64.1
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 9.8e-67 257.3 196 65.3
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 9.8e-67 257.3 195 62.6
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 2.8e-66 255.8 198 64.1
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 3.7e-66 255.4 195 62.6
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 3.7e-66 255.4 194 64.4
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 4.8e-66 255.0 196 65.8
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 4.8e-66 255.0 198 63.6
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 8.3e-66 254.2 195 62.6
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 1.1e-65 253.8 195 62.1
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 1.1e-65 253.8 194 64.4
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 1.4e-65 253.4 197 60.9
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 1.8e-65 253.1 194 63.9
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 2.4e-65 252.7 200 62.5
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 1.2e-64 250.4 195 62.1
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 1.6e-64 250.0 195 60.5
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 4.5e-64 248.4 200 62.0
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 5.9e-64 248.1 196 63.8
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 7.7e-64 247.7 195 60.5
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 1.3e-63 246.9 195 60.0
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 1.7e-63 246.5 196 62.2
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 2.9e-63 245.7 196 62.8
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 2.9e-63 245.7 200 60.5
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 3.8e-63 245.4 200 67.5
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 6.6e-63 244.6 195 59.5
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 8.6e-63 244.2 195 62.1
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 1.1e-62 243.8 201 61.2
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 1.5e-62 243.4 196 60.7
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 2.5e-62 242.7 194 60.3
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 4.2e-62 241.9 195 59.0
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 4.2e-62 241.9 195 59.0
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 9.5e-62 240.7 195 60.0
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 1.2e-61 240.4 195 60.0
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 1.6e-61 240.0 195 59.5
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 2.8e-61 239.2 213 58.7
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 2.8e-61 239.2 192 60.4
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 2.8e-61 239.2 197 58.4
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 6.1e-61 238.0 197 57.9
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 6.1e-61 238.0 194 59.8
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 8.0e-61 237.7 200 59.5
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 8.0e-61 237.7 197 60.9
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 8.0e-61 237.7 197 60.9
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 1.0e-60 237.3 195 59.5
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.8e-60 236.5 222 58.1
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 2.3e-60 236.1 199 58.3
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 3.0e-60 235.7 259 49.8
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 5.2e-60 235.0 222 57.2
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 8.9e-60 234.2 210 55.2
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 8.9e-60 234.2 122 84.4
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 8.9e-60 234.2 129 81.4
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 1.2e-59 233.8 195 60.0
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 2.0e-59 233.0 195 58.5
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 2.6e-59 232.6 121 86.8
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 7.5e-59 231.1 195 57.9
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 2.2e-58 229.6 197 56.9
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 2.8e-58 229.2 200 58.0
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 4.9e-58 228.4 195 62.6
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 4.9e-58 228.4 120 83.3
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 4.9e-58 228.4 120 83.3
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 6.3e-58 228.0 264 48.1
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.8e-57 226.5 220 53.6
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 1.2e-56 223.8 123 80.5
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 1.2e-56 223.8 135 76.3
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 5.9e-56 221.5 206 56.8
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 1.0e-55 220.7 195 52.8
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 2.3e-55 219.5 200 56.5
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 5.0e-55 218.4 205 54.6
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 8.6e-55 217.6 153 66.7
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 1.1e-54 217.2 194 54.1
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.9e-54 216.5 119 79.8
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 1.9e-54 216.5 194 54.1
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 2.5e-54 216.1 184 58.2
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 4.3e-54 215.3 199 54.8
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 4.3e-54 215.3 122 74.6
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 1.0e-52 210.7 126 73.8
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 2.9e-50 202.6 200 54.0
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 4.9e-50 201.8 134 65.7
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 4.1e-49 198.7 164 58.5
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 9.2e-49 197.6 118 72.9
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 4.6e-48 195.3 209 52.2
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 4.6e-48 195.3 195 52.8
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 1.3e-47 193.7 114 72.8
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 4.3e-46 188.7 259 43.6
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 1.2e-45 187.2 130 63.1
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 6.2e-45 184.9 124 71.0
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 8.9e-44 181.0 95 84.2
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 2.6e-43 179.5 115 60.0
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 7.5e-43 177.9 169 55.0
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.1e-41 174.1 122 61.5
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 1.2e-40 170.6 169 52.7
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 3.5e-40 169.1 195 47.2
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 3.5e-40 169.1 115 58.3
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 5.1e-39 165.2 183 49.7
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 7.3e-38 161.4 125 63.2
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 2.4e-33 146.4 164 50.0
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 2.3e-31 139.8 139 54.0
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 3.3e-30 136.0 102 54.9
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 1.2e-29 134.0 136 52.2
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.6e-29 133.7 201 37.8
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 2.1e-29 133.3 106 50.9
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.8e-28 130.2 156 46.2
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 1.2e-27 127.5 63 88.9
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 1.2e-27 127.5 142 50.0
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 3.8e-26 122.5 108 47.2
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 1.4e-25 120.6 271 32.1
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 1.9e-25 120.2 92 63.0
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 3.2e-25 119.4 100 44.0
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 9.2e-25 117.9 96 51.0
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 3.9e-23 112.5 57 86.0
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 6.6e-23 111.7 56 83.9
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 2.1e-21 106.7 95 46.3
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 4.4e-19 99.0 104 44.2
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 1.7e-18 97.1 99 37.4
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 4.9e-18 95.5 117 46.2
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 1.3e-15 87.4 118 42.4
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 2.1e-13 80.1 74 47.3
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 5.3e-12 75.5 117 33.3
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 9.0e-12 74.7 50 60.0
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 1.7e-10 70.5 116 37.1
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 1.7e-10 70.5 40 77.5
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 3.2e-09 66.2 36 72.2
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 3.2e-09 66.2 36 72.2
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 6.0e-08 62.0 101 38.6
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 1.9e-06 57.0 109 37.6
Atru.chr9.1169 Acer truncatum HOM05D003028 ORTHO05D037933 3.3e-06 56.2 28 82.1


User provided reference genes

Program Settings