Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 3.8e-141 505.0 282 100.0
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 5.3e-135 484.6 284 96.5
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 6.0e-131 471.1 284 94.4
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.0e-105 386.3 288 77.1
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 2.5e-84 316.2 283 68.6
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 4.7e-83 312.0 218 81.2
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.4e-71 273.1 234 62.4
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 4.3e-68 262.3 241 57.3
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.6e-67 260.4 304 52.3
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 1.2e-65 254.2 242 56.6
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 9.8e-65 251.1 295 52.5
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 1.3e-64 250.8 296 50.3
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 1.3e-64 250.8 287 51.6
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 4.9e-64 248.8 272 53.3
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.9e-64 248.8 245 55.9
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 6.4e-64 248.4 238 57.1
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 6.4e-64 248.4 238 56.3
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 1.1e-63 247.7 296 49.0
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.9e-63 246.9 239 58.6
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.1e-63 245.7 245 55.1
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 4.1e-63 245.7 285 50.9
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 4.6e-62 242.3 243 56.0
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 7.8e-62 241.5 285 50.2
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 1.3e-61 240.7 242 57.4
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 2.3e-61 240.0 285 50.2
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 6.6e-61 238.4 213 61.5
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 8.6e-61 238.0 356 44.7
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.9e-60 236.9 242 54.5
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 2.1e-59 233.4 290 49.3
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 2.1e-59 233.4 290 49.3
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 2.1e-59 233.4 237 54.9
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 5.2e-58 228.8 211 59.7
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 5.2e-58 228.8 242 53.7
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 1.2e-57 227.6 239 57.3
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.2e-57 227.6 406 39.9
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 2.0e-57 226.9 235 53.6
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 3.4e-57 226.1 278 48.2
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.4e-57 225.7 220 56.4
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.4e-57 225.7 220 56.4
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 1.7e-56 223.8 242 52.9
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.7e-56 223.8 420 38.8
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 1.7e-56 223.8 241 53.5
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 1.1e-55 221.1 241 51.5
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.2e-54 217.6 212 58.5
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 1.2e-54 217.6 242 52.9
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 6.0e-54 215.3 245 51.0
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 1.0e-53 214.5 243 51.4
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 1.3e-53 214.2 241 52.7
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 2.3e-53 213.4 240 48.8
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 5.1e-53 212.2 240 48.8
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 5.6e-52 208.8 237 49.8
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 9.5e-52 208.0 241 48.5
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 1.1e-50 204.5 241 52.3
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.1e-50 204.5 242 47.9
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 1.8e-50 203.8 243 51.0
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 4.0e-50 202.6 241 48.1
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 1.2e-49 201.1 240 51.2
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 4.9e-48 195.7 241 49.0
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 8.4e-48 194.9 245 46.9
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.1e-47 194.5 231 49.4
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 1.4e-47 194.1 246 45.9
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.9e-47 193.7 243 54.3
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 2.4e-47 193.4 303 43.6
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 2.4e-47 193.4 240 49.2
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 1.2e-46 191.0 325 43.7
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 2.7e-46 189.9 245 49.4
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.0e-45 188.0 229 48.9
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.7e-45 187.2 235 47.7
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 2.3e-45 186.8 235 47.7
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 1.1e-44 184.5 241 47.3
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 3.6e-43 179.5 252 45.2
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 8.1e-43 178.3 239 44.4
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 8.1e-43 178.3 242 46.7
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.8e-42 177.2 234 45.7
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 8.9e-42 174.9 247 40.5
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.2e-41 174.5 242 45.0
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 2.0e-41 173.7 253 45.1
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 2.6e-41 173.3 240 44.6
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 4.4e-41 172.6 249 44.2
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 9.9e-41 171.4 249 44.2
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 9.9e-41 171.4 249 44.2
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 9.9e-41 171.4 246 43.1
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 3.8e-40 169.5 249 43.8
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 4.9e-40 169.1 220 46.4
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 1.4e-39 167.5 264 39.0
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.4e-39 167.5 241 42.3
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 4.2e-39 166.0 249 43.4
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 7.1e-39 165.2 239 42.7
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.7e-38 163.3 234 43.2
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 5.1e-37 159.1 286 39.2
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 1.1e-36 157.9 291 36.8
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.5e-36 157.5 239 40.2
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 4.3e-36 156.0 246 40.7
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 5.6e-36 155.6 247 42.1
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 5.6e-36 155.6 176 48.9
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 1.3e-35 154.5 216 44.4
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.6e-35 154.1 242 39.7
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 4.8e-35 152.5 239 41.0
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.8e-34 150.6 255 41.6
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 4.0e-34 149.4 265 40.8
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 5.3e-34 149.1 242 39.3
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 6.9e-34 148.7 238 39.9
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.0e-33 147.1 210 43.8
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 2.6e-33 146.7 180 45.6
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 4.4e-33 146.0 150 52.7
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 4.4e-33 146.0 195 48.7
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 4.9e-32 142.5 254 39.4
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 6.4e-32 142.1 212 41.0
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.9e-31 140.6 144 54.2
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 4.2e-31 139.4 238 40.8
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 3.5e-30 136.3 234 40.2
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 6.0e-30 135.6 319 39.8
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 1.7e-29 134.0 174 48.3
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.7e-29 134.0 147 51.7
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 3.0e-29 133.3 245 38.0
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.1e-28 131.3 215 40.0
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 1.1e-28 131.3 261 41.4
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 2.8e-27 126.7 230 38.7
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 5.3e-26 122.5 252 36.5
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 5.3e-26 122.5 83 72.3
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 2.0e-25 120.6 252 36.1
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 8.4e-24 115.2 255 33.3
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 2.4e-23 113.6 216 37.5
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 4.2e-23 112.8 255 34.9
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 2.7e-22 110.2 200 35.0
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 7.9e-22 108.6 271 32.8
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 7.9e-22 108.6 281 31.7
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 1.8e-21 107.5 223 35.9
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 3.0e-21 106.7 215 36.3
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 5.1e-21 105.9 215 35.8
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 1.9e-20 104.0 211 34.6
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 2.5e-20 103.6 179 39.7
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.6e-19 100.9 214 36.0
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 1.6e-19 100.9 253 33.6
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 8.1e-19 98.6 153 43.1
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 1.5e-17 94.4 83 59.0
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 3.8e-16 89.7 222 32.0
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 1.4e-15 87.8 221 33.5
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 6.7e-13 79.0 131 40.5
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 6.3e-11 72.4 69 53.6
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 4.5e-09 66.2 75 46.7
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 2.9e-08 63.5 52 61.5
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.9e-08 63.5 66 53.0


User provided reference genes

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