Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 8.6e-84 313.5 150 100.0
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 3.0e-81 305.1 148 98.6
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 6.8e-81 303.9 148 99.3
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 3.3e-75 285.0 148 89.2
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 4.7e-74 281.2 148 87.8
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 4.7e-74 281.2 148 87.8
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 6.8e-73 277.3 148 89.2
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 8.9e-73 276.9 149 87.2
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 3.4e-72 275.0 148 88.5
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.3e-71 273.1 148 87.8
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.7e-71 272.7 144 86.8
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.2e-71 272.3 146 85.6
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 8.3e-71 270.4 148 85.1
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 7.3e-67 257.3 146 80.8
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 9.5e-67 256.9 146 79.5
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 4.7e-66 254.6 139 82.0
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 3.4e-64 248.4 142 78.2
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 1.7e-63 246.1 143 76.9
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 2.7e-61 238.8 143 74.8
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 7.8e-61 237.3 143 75.5
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 7.8e-61 237.3 143 74.1
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 1.0e-60 236.9 145 73.1
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 1.0e-60 236.9 148 73.0
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 3.9e-60 235.0 148 73.0
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 6.6e-60 234.2 147 72.1
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 1.1e-59 233.4 137 75.2
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 1.5e-59 233.0 139 75.5
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.5e-59 233.0 137 76.6
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 3.3e-59 231.9 145 75.2
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 4.3e-59 231.5 143 71.3
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 4.3e-59 231.5 137 74.5
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 4.3e-59 231.5 145 69.7
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 1.6e-58 229.6 142 71.1
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 1.6e-58 229.6 136 71.3
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 6.2e-58 227.6 143 71.3
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 1.4e-57 226.5 136 70.6
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.8e-57 226.1 137 72.3
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 2.4e-57 225.7 144 68.1
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 4.0e-57 224.9 144 70.1
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 3.4e-56 221.9 144 68.1
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 5.8e-56 221.1 145 64.1
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 7.6e-56 220.7 144 69.4
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 7.6e-56 220.7 140 73.6
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 9.9e-56 220.3 143 70.6
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 1.7e-55 219.5 142 68.3
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 1.7e-55 219.5 138 68.1
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 3.8e-55 218.4 140 68.6
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 1.4e-54 216.5 137 73.0
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 2.4e-54 215.7 141 71.6
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 5.4e-54 214.5 144 67.4
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 5.4e-54 214.5 144 67.4
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 9.2e-54 213.8 131 73.3
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 1.2e-53 213.4 130 74.6
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 1.6e-53 213.0 143 69.2
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 1.6e-53 213.0 141 70.2
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.6e-53 213.0 147 66.0
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 2.1e-53 212.6 137 70.8
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 2.1e-53 212.6 145 65.5
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 2.1e-53 212.6 144 67.4
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 2.7e-53 212.2 133 70.7
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 2.7e-53 212.2 144 66.7
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 3.5e-53 211.8 137 69.3
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 3.5e-53 211.8 137 70.8
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 3.5e-53 211.8 133 75.9
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.0e-52 210.3 129 75.2
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.3e-52 209.9 143 71.3
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 1.7e-52 209.5 137 71.5
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 8.6e-52 207.2 131 70.2
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 8.6e-52 207.2 148 65.5
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 1.1e-51 206.8 135 66.7
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 1.5e-51 206.5 143 67.1
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.9e-51 206.1 131 71.8
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 1.9e-51 206.1 130 69.2
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 1.9e-51 206.1 140 65.7
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 2.5e-51 205.7 134 68.7
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 3.3e-51 205.3 131 71.8
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 4.3e-51 204.9 128 73.4
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 4.3e-51 204.9 130 72.3
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 5.6e-51 204.5 130 72.3
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 5.6e-51 204.5 135 69.6
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 5.6e-51 204.5 135 69.6
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 9.6e-51 203.8 129 72.1
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 9.6e-51 203.8 131 71.0
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 9.6e-51 203.8 144 66.7
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.2e-50 203.4 130 70.8
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 1.2e-50 203.4 128 74.2
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 1.2e-50 203.4 128 74.2
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 1.2e-50 203.4 128 74.2
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 2.1e-50 202.6 128 72.7
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 3.6e-50 201.8 121 74.4
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 4.7e-50 201.4 154 61.7
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 4.7e-50 201.4 134 65.7
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 6.2e-50 201.1 128 71.9
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 6.2e-50 201.1 141 66.0
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 3.1e-49 198.7 211 49.8
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 4.0e-49 198.4 146 63.0
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 5.2e-49 198.0 132 69.7
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 5.2e-49 198.0 132 69.7
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 5.2e-49 198.0 132 69.7
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 4.4e-48 194.9 131 65.6
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 4.4e-48 194.9 121 73.6
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 5.8e-48 194.5 146 62.3
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 4.9e-47 191.4 139 59.0
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 4.9e-47 191.4 129 69.0
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 8.4e-47 190.7 131 64.9
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 8.4e-47 190.7 139 59.0
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 1.4e-46 189.9 141 62.4
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 9.3e-46 187.2 136 63.2
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 3.5e-45 185.3 126 61.9
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.7e-44 183.0 148 57.4
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.3e-42 176.8 121 65.3
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 2.1e-42 176.0 122 62.3
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 3.4e-40 168.7 214 43.0
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 7.6e-40 167.5 126 63.5
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 2.9e-39 165.6 112 67.0
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 6.7e-36 154.5 131 56.5
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 6.2e-34 147.9 134 49.3
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 8.1e-34 147.5 129 55.0
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 1.4e-33 146.7 131 49.6
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 4.0e-33 145.2 134 47.8
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 1.4e-30 136.7 80 76.2
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 3.2e-30 135.6 145 50.3
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 3.2e-30 135.6 96 65.6
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 1.6e-29 133.3 134 45.5
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 1.3e-28 130.2 118 50.0
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 1.8e-28 129.8 83 71.1
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 6.7e-28 127.9 97 60.8
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 1.1e-27 127.1 118 49.2
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 3.3e-27 125.6 84 69.0
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 4.3e-27 125.2 118 48.3
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 3.1e-25 119.0 114 48.2
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 5.8e-24 114.8 163 38.7
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 2.9e-23 112.5 132 43.2
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 6.5e-23 111.3 136 39.7
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 8.4e-23 110.9 95 50.5
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 3.5e-21 105.5 130 41.5
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 6.3e-18 94.7 83 57.8
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 6.3e-18 94.7 74 62.2
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.2e-16 90.5 60 65.0
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.5e-16 90.1 60 65.0
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 2.0e-16 89.7 147 30.6
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 6.5e-15 84.7 132 31.1
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 2.7e-13 79.3 72 50.0
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 1.3e-10 70.5 106 34.9
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 8.5e-07 57.8 38 63.2
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 1.4e-06 57.0 37 70.3


User provided reference genes

Program Settings