Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 1.3e-206 723.4 536 100.0
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 7.5e-199 697.6 536 97.2
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 3.4e-191 672.2 538 93.9
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 2.6e-130 469.9 546 69.8
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.1e-124 450.3 435 83.4
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 9.7e-122 441.4 532 75.6
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.9e-117 427.2 436 82.6
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 4.9e-89 332.8 568 59.7
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 3.5e-87 326.6 546 56.0
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 7.8e-87 325.5 541 59.0
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 5.0e-86 322.8 600 60.3
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 9.5e-85 318.5 558 51.6
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 2.1e-84 317.4 463 59.0
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 2.8e-84 317.0 472 62.7
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 4.7e-84 316.2 537 61.5
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.1e-83 315.1 560 53.2
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 1.1e-83 315.1 543 61.3
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.4e-83 314.7 537 63.7
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 1.8e-83 314.3 544 66.4
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 6.8e-83 312.4 562 62.8
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 1.3e-81 308.1 543 59.7
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 1.7e-81 307.8 502 58.0
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 1.7e-81 307.8 535 60.4
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 2.2e-81 307.4 544 61.4
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 2.9e-81 307.0 545 61.3
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.9e-81 307.0 550 58.5
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 4.9e-81 306.2 570 58.8
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 4.9e-81 306.2 560 56.4
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 4.9e-81 306.2 549 54.8
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 4.9e-81 306.2 545 57.2
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 2.4e-80 303.9 542 58.5
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 3.2e-80 303.5 554 58.5
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 4.1e-80 303.1 538 58.7
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 4.1e-80 303.1 554 58.5
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 7.1e-80 302.4 566 59.2
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 9.2e-80 302.0 548 64.8
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.2e-79 301.6 550 57.8
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.2e-79 301.6 544 60.1
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 3.5e-79 300.1 564 56.4
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 4.6e-79 299.7 557 61.4
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 1.0e-78 298.5 564 59.2
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 2.3e-78 297.4 538 59.5
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 5.1e-78 296.2 440 68.4
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 5.1e-78 296.2 537 61.5
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 5.1e-78 296.2 544 57.0
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 6.6e-78 295.8 553 58.2
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 8.6e-78 295.4 448 67.2
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 1.1e-77 295.0 550 57.5
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 2.5e-77 293.9 439 70.4
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 5.6e-77 292.7 557 61.0
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 7.3e-77 292.4 545 63.7
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 9.5e-77 292.0 571 58.3
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 9.5e-77 292.0 554 55.8
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 1.2e-76 291.6 457 63.2
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 2.1e-76 290.8 466 52.6
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 4.7e-76 289.7 551 54.3
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.1e-75 288.5 564 52.0
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 2.4e-75 287.3 532 63.2
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.4e-75 287.3 551 58.8
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 4.0e-75 286.6 573 58.5
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 5.2e-75 286.2 552 44.9
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 2.0e-74 284.3 568 56.0
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 5.8e-74 282.7 435 62.5
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 9.9e-74 282.0 537 61.3
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.7e-73 281.2 600 52.8
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 2.9e-73 280.4 582 55.7
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 6.4e-73 279.3 557 55.3
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 1.9e-72 277.7 550 56.4
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 2.4e-72 277.3 569 58.3
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 5.4e-72 276.2 543 62.8
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 5.4e-72 276.2 562 56.2
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 7.1e-72 275.8 570 57.2
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 2.1e-71 274.2 435 68.5
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.1e-71 274.2 567 57.7
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 2.7e-71 273.9 437 69.6
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 6.0e-71 272.7 592 54.2
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 1.3e-70 271.6 435 68.7
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 1.3e-70 271.6 546 59.7
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.3e-70 271.6 592 54.7
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.3e-70 271.6 433 68.1
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 3.9e-70 270.0 437 68.2
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 6.6e-70 269.2 576 53.3
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 8.7e-70 268.9 490 55.1
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.1e-69 268.5 543 59.3
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 1.5e-69 268.1 589 50.8
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.9e-69 267.7 429 66.7
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 3.3e-69 266.9 434 68.2
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 7.3e-69 265.8 554 54.3
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 9.6e-69 265.4 520 53.1
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 9.6e-69 265.4 180 76.1
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 1.6e-68 264.6 179 76.5
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 8.1e-68 262.3 517 55.5
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 4.0e-67 260.0 192 73.4
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 5.2e-67 259.6 522 51.0
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.2e-66 258.5 170 78.2
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 2.6e-66 257.3 413 62.5
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 3.4e-66 256.9 168 78.0
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 9.9e-66 255.4 556 46.6
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.7e-65 254.6 194 70.6
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.7e-65 254.6 167 77.2
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 2.9e-65 253.8 167 76.6
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 4.9e-65 253.1 434 64.1
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 4.9e-65 253.1 182 73.6
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-64 251.9 431 57.3
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 1.1e-64 251.9 431 57.5
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 1.9e-64 251.1 436 55.5
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 7.1e-64 249.2 571 48.3
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 9.3e-64 248.8 431 56.6
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.1e-63 247.7 553 56.8
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 3.5e-63 246.9 167 77.2
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 4.6e-63 246.5 179 72.6
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 7.8e-63 245.7 171 77.2
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-62 245.0 178 72.5
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 3.9e-62 243.4 433 56.4
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.9e-62 243.4 181 71.3
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 6.6e-62 242.7 181 71.8
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 8.7e-62 242.3 555 45.0
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 1.1e-61 241.9 428 59.3
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.9e-61 241.1 150 82.7
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 4.3e-61 240.0 157 77.7
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 8.1e-60 235.7 175 70.9
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 2.4e-59 234.2 434 57.6
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 5.3e-59 233.0 167 73.1
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 4.5e-58 229.9 135 84.4
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 4.5e-58 229.9 134 85.1
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 2.2e-57 227.6 134 84.3
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 5.4e-56 223.0 131 84.7
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 7.1e-56 222.6 431 39.0
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 1.2e-55 221.9 124 87.9
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.2e-55 221.9 539 45.8
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 1.8e-54 218.0 134 81.3
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 3.0e-54 217.2 191 65.4
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 5.1e-54 216.5 480 48.5
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-53 215.3 431 53.1
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-53 215.3 165 69.1
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 4.3e-53 213.4 188 66.0
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 4.3e-53 213.4 138 80.4
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 4.3e-53 213.4 180 65.6
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 7.4e-53 212.6 127 85.8
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 2.1e-52 211.1 169 69.2
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 4.8e-52 209.9 171 68.4
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 4.8e-52 209.9 171 68.4
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 3.5e-47 193.7 182 59.3
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 1.5e-45 188.3 163 63.8
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 1.6e-44 184.9 385 56.1
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 1.6e-44 184.9 138 70.3
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-42 178.7 127 74.8
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 1.4e-40 171.8 133 69.9
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 2.5e-40 171.0 100 84.0
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 7.1e-40 169.5 104 82.7
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 1.6e-39 168.3 133 70.7
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 1.1e-37 162.2 105 77.1
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.2e-34 152.1 164 56.1
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 2.6e-34 151.0 105 70.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 1.9e-32 144.8 116 62.1
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 2.3e-30 137.9 86 80.2
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 5.7e-29 133.3 86 77.9
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 7.4e-29 132.9 138 48.6
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 3.1e-27 127.5 185 47.0
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 4.5e-26 123.6 70 90.0
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 1.0e-25 122.5 86 72.1
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 2.2e-25 121.3 185 47.0
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 2.9e-25 120.9 86 70.9
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.3e-22 111.3 477 51.4
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 2.3e-22 111.3 66 84.8
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.3e-22 111.3 537 39.7
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 7.4e-21 106.3 70 77.1
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 4.8e-20 103.6 70 75.7
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 1.0e-17 95.9 69 72.5
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 1.0e-17 95.9 90 60.0
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 6.1e-15 86.7 56 82.1
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 8.8e-14 82.8 54 79.6
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 2.6e-13 81.3 59 69.5
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 9.7e-13 79.3 92 54.3
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 9.7e-13 79.3 96 53.1
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 2.0e-10 71.6 95 53.7
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 5.0e-09 67.0 49 67.3


User provided reference genes

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