Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 5.1e-120 434.5 228 100.0
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 5.1e-120 434.5 228 100.0
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 2.6e-116 422.2 228 96.9
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 3.2e-114 415.2 228 95.6
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 5.6e-111 404.4 228 91.7
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 9.6e-111 403.7 228 92.5
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 6.9e-109 397.5 228 93.0
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 1.5e-108 396.4 226 90.3
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 2.0e-108 396.0 225 91.1
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 2.6e-108 395.6 229 91.7
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 5.8e-108 394.4 220 94.1
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 5.8e-108 394.4 228 91.7
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 9.9e-108 393.7 226 91.2
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 1.3e-107 393.3 225 91.1
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 1.3e-107 393.3 231 90.0
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 1.7e-107 392.9 224 90.6
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.7e-107 392.9 226 90.7
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 2.2e-107 392.5 227 91.6
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 2.2e-107 392.5 233 89.7
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 2.9e-107 392.1 225 89.8
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 2.9e-107 392.1 228 90.8
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 3.8e-107 391.7 230 91.3
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 4.9e-107 391.3 230 90.4
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 4.9e-107 391.3 223 91.0
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 8.4e-107 390.6 229 90.0
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 1.1e-106 390.2 228 90.4
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 1.1e-106 390.2 228 90.8
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 1.9e-106 389.4 235 87.7
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 1.9e-106 389.4 224 91.1
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 1.9e-106 389.4 225 89.3
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 2.4e-106 389.0 228 90.4
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 4.2e-106 388.3 224 89.7
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 5.4e-106 387.9 228 90.8
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 5.4e-106 387.9 228 90.8
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 5.4e-106 387.9 230 87.8
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 5.4e-106 387.9 226 88.9
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 2.1e-105 386.0 223 89.7
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 2.7e-105 385.6 232 86.6
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 6.0e-105 384.4 224 89.7
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 6.0e-105 384.4 231 88.3
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 7.8e-105 384.0 229 86.9
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 7.8e-105 384.0 229 87.3
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 1.0e-104 383.6 227 88.5
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 1.0e-104 383.6 225 88.4
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 1.3e-104 383.3 235 86.4
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 1.3e-104 383.3 228 88.6
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.7e-104 382.9 230 88.3
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 3.0e-104 382.1 224 89.3
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 3.0e-104 382.1 229 88.6
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 3.9e-104 381.7 231 88.7
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 3.9e-104 381.7 233 86.3
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 5.1e-104 381.3 231 87.0
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 5.1e-104 381.3 228 89.0
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 5.1e-104 381.3 225 87.6
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 6.6e-104 380.9 224 87.5
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 8.7e-104 380.6 224 88.8
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 8.7e-104 380.6 227 88.1
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 1.1e-103 380.2 224 88.4
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 1.5e-103 379.8 224 87.9
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.5e-103 379.8 232 88.8
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 2.5e-103 379.0 224 87.9
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 3.3e-103 378.6 228 86.8
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 3.3e-103 378.6 224 87.9
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 3.3e-103 378.6 228 87.7
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 4.3e-103 378.3 224 87.1
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 4.3e-103 378.3 228 89.5
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 4.3e-103 378.3 224 87.9
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 5.6e-103 377.9 224 87.5
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 7.3e-103 377.5 224 87.9
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 7.3e-103 377.5 225 89.3
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 7.3e-103 377.5 228 89.0
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 9.6e-103 377.1 229 86.5
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 9.6e-103 377.1 253 80.6
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 9.6e-103 377.1 224 87.5
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 9.6e-103 377.1 229 86.9
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 1.3e-102 376.7 224 86.6
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 1.3e-102 376.7 224 86.6
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 1.6e-102 376.3 227 86.8
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 1.6e-102 376.3 225 86.7
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 1.6e-102 376.3 229 87.3
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 2.8e-102 375.6 232 85.8
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 3.6e-102 375.2 231 85.3
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 3.6e-102 375.2 222 87.8
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 4.8e-102 374.8 224 87.5
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 4.8e-102 374.8 227 86.3
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 6.2e-102 374.4 224 87.5
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 6.2e-102 374.4 224 87.5
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 6.2e-102 374.4 224 87.5
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 6.2e-102 374.4 225 85.8
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 8.1e-102 374.0 229 85.2
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 8.1e-102 374.0 232 87.1
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 1.1e-101 373.6 229 85.6
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 1.1e-101 373.6 229 86.0
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 1.4e-101 373.2 224 87.1
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 4.0e-101 371.7 211 92.4
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 6.9e-101 370.9 229 86.0
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.2e-100 370.2 224 86.6
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 1.5e-100 369.8 219 85.4
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 4.5e-100 368.2 229 86.5
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 4.5e-100 368.2 224 85.3
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 4.5e-100 368.2 225 86.2
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 2.9e-99 365.5 225 84.4
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 4.9e-99 364.8 230 84.3
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 6.4e-99 364.4 224 83.5
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 8.4e-99 364.0 228 84.6
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 1.4e-98 363.2 224 85.7
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 1.9e-98 362.8 218 84.9
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 1.9e-98 362.8 227 85.9
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 5.4e-98 361.3 204 91.7
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 7.9e-97 357.5 306 68.6
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 3.3e-95 352.1 221 81.9
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 1.1e-93 347.1 222 82.4
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 5.8e-92 341.3 190 96.8
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 1.4e-90 336.7 190 91.6
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 3.5e-89 332.0 234 79.5
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 3.1e-85 318.9 215 75.3
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 3.1e-85 318.9 207 79.7
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 1.4e-82 310.1 220 74.1
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 3.3e-79 298.9 179 89.9
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 8.2e-78 294.3 215 72.6
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 6.9e-77 291.2 194 82.0
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 7.2e-74 281.2 163 93.3
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.1e-73 279.6 162 92.6
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 1.4e-72 276.9 157 90.4
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 1.8e-72 276.6 177 83.6
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 1.8e-72 276.6 155 92.3
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 5.1e-72 275.0 155 92.9
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 1.3e-70 270.4 166 88.0
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 3.1e-69 265.8 161 86.3
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 4.1e-69 265.4 179 77.7
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.9e-69 264.6 185 74.6
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 4.8e-62 241.9 158 77.8
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 4.4e-55 218.8 127 89.8
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 2.2e-51 206.5 159 72.3
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 5.9e-44 181.8 110 90.0
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 2.2e-43 179.9 103 91.3
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 3.6e-41 172.6 104 90.4
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.7e-36 156.4 159 59.1
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.2e-33 147.5 88 90.9
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 2.0e-28 130.2 80 78.8
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 1.2e-25 120.9 206 39.3
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 5.8e-23 112.1 60 91.7
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 9.8e-23 111.3 81 72.8
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 4.6e-20 102.4 64 79.7
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 2.8e-17 93.2 66 75.8
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 1.3e-14 84.3 60 70.0
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 6.6e-11 72.0 46 78.3


User provided reference genes

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