Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g029110 Solanum pennellii HOM05D001813 ORTHO05D008124 1.9e-37 158.7 80 100.0
PGSC0003DMG400027401 Solanum tuberosum HOM05D001813 ORTHO05D008124 2.5e-37 158.3 79 100.0
Solyc11g072010.3 Solanum lycopersicum HOM05D001813 ORTHO05D008124 1.2e-36 156.0 79 97.5
Sopen11g029670 Solanum pennellii HOM05D001813 ORTHO05D008124 1.6e-36 155.6 79 98.7
CAN.G280.22 Capsicum annuum HOM05D001813 ORTHO05D008124 7.9e-36 153.3 79 96.2
Peaxi162Scf00217g01216 Petunia axillaris HOM05D001813 ORTHO05D008124 3.9e-35 151.0 79 93.7
Nitab4.5_0002567g0070 Nicotiana tabacum HOM05D001813 ORTHO05D008124 1.1e-34 149.4 80 92.5
Nitab4.5_0009952g0030 Nicotiana tabacum HOM05D001813 ORTHO05D008124 5.7e-34 147.1 79 91.1
CSS0030952 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D008124 9.4e-29 129.8 79 74.7
CSS0024545 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D008124 1.6e-28 129.0 79 74.7
Oeu032072.1 Olea europaea HOM05D001813 ORTHO05D008124 1.6e-28 129.0 78 79.5
Dinv05236 Davidia involucrata HOM05D001813 ORTHO05D008124 3.6e-28 127.9 79 74.7
DCAR_002126 Daucus carota HOM05D001813 ORTHO05D008124 4.6e-28 127.5 79 74.7
Migut.N02415 Erythranthe guttata HOM05D001813 ORTHO05D008124 4.6e-28 127.5 79 77.2
CSS0021753 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D008124 7.9e-28 126.7 79 73.4
CSS0014449 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D008124 1.0e-27 126.3 79 73.4
CSS0034856 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D008124 1.4e-27 125.9 78 73.1
Lj2A924G26 Lonicera japonica HOM05D001813 ORTHO05D008124 3.0e-27 124.8 79 73.4
Lj2C922G2 Lonicera japonica HOM05D001813 ORTHO05D008124 5.1e-27 124.0 79 73.4
Actinidia07014 Actinidia chinensis HOM05D001813 ORTHO05D008124 1.1e-26 122.9 79 70.9
vmacro04107 Vaccinium macrocarpon HOM05D001813 ORTHO05D008124 4.3e-26 120.9 79 73.4
Atru.chr3.2923 Acer truncatum HOM05D001813 ORTHO05D008124 5.7e-26 120.6 79 70.9
Ciclev10031821m.g Citrus clementina HOM05D001813 ORTHO05D008124 9.7e-26 119.8 79 70.9
Cc01_g07600 Coffea canephora HOM05D001813 ORTHO05D008124 9.7e-26 119.8 79 73.4
arahy.Tifrunner.gnm1.ann1.876Z5Z Arachis hypogaea HOM05D001813 ORTHO05D008124 1.7e-25 119.0 79 67.1
arahy.Tifrunner.gnm1.ann1.TY5MIX Arachis hypogaea HOM05D001813 ORTHO05D008124 1.7e-25 119.0 79 67.1
Rhsim13G0201100 Rhododendron simsii HOM05D001813 ORTHO05D008124 1.7e-25 119.0 79 70.9
MSTRG.17658 Avicennia marina HOM05D001813 ORTHO05D008124 4.8e-25 117.5 79 69.6
QL01p020357 Quercus lobata HOM05D001813 ORTHO05D008124 4.8e-25 117.5 79 72.2
Sabra04G0133000 Salix brachista HOM05D001813 ORTHO05D008124 4.8e-25 117.5 79 68.4
Manes.04G055488 Manihot esculenta HOM05D001813 ORTHO05D008124 6.3e-25 117.1 79 69.6
Nn7g37283 Nelumbo nucifera HOM05D001813 ORTHO05D008124 8.2e-25 116.7 79 72.2
Lj6g0025568 Lotus japonicus HOM05D001813 ORTHO05D008124 1.1e-24 116.3 79 68.4
SalBow3G4352 Salvia bowleyana HOM05D001813 ORTHO05D008124 1.1e-24 116.3 79 69.6
Prupe.5G009800 Prunus persica HOM05D001813 ORTHO05D008124 1.4e-24 115.9 79 70.9
Ca_16236_v3 Cicer arietinum L. HOM05D001813 ORTHO05D008124 1.8e-24 115.5 79 67.1
ECA240G4767 Erigeron canadensis HOM05D001813 ORTHO05D008124 3.1e-24 114.8 79 65.8
Psat5g109280 Pisum sativum HOM05D001813 ORTHO05D008124 3.1e-24 114.8 79 65.8
Potri.004G196200 Populus trichocarpa HOM05D001813 ORTHO05D008124 3.1e-24 114.8 76 69.7
GSVIVG01037466001 Vitis vinifera HOM05D001813 ORTHO05D008124 4.1e-24 114.4 79 68.4
Lalb_Chr02g0158501 Lupinus albus HOM05D001813 ORTHO05D008124 5.3e-24 114.0 79 64.6
Aa31LG1G13710 Aethionema arabicum HOM05D001813 ORTHO05D008124 6.9e-24 113.6 76 71.1
MBI19_g32309_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D008124 6.9e-24 113.6 79 67.1
Gohir.D03G132900 Gossypium hirsutum HOM05D001813 ORTHO05D008124 9.1e-24 113.2 79 69.6
Gorai.003G140000 Gossypium raimondii HOM05D001813 ORTHO05D008124 9.1e-24 113.2 79 69.6
Lsat_1_v5_gn_6_79520 Lactuca sativa HOM05D001813 ORTHO05D008124 9.1e-24 113.2 79 67.1
TWI31G1397 Tripterygium wilfordii HOM05D001813 ORTHO05D008124 9.1e-24 113.2 79 68.4
unitig_699.g19161 Utricularia gibba HOM05D001813 ORTHO05D008124 9.1e-24 113.2 79 69.6
MBI19_g40249_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D008124 1.2e-23 112.8 79 67.1
Medtr3g079330 Medicago truncatula HOM05D001813 ORTHO05D008124 1.2e-23 112.8 79 67.1
TAR623G0200 Trochodendron aralioides HOM05D001813 ORTHO05D008124 1.2e-23 112.8 79 67.1
A10p19010 Brassica napus HOM05D001813 ORTHO05D008124 1.5e-23 112.5 76 69.7
BraA10t43979Z Brassica rapa HOM05D001813 ORTHO05D008124 1.5e-23 112.5 76 69.7
MD11G1179300 Malus domestica HOM05D001813 ORTHO05D008124 1.5e-23 112.5 78 69.2
AUR62020171 Chenopodium quinoa HOM05D001813 ORTHO05D008124 2.0e-23 112.1 79 64.6
CARHR191810 Cardamine hirsuta HOM05D001813 ORTHO05D008124 2.6e-23 111.7 76 69.7
COL.COLO4_18373 Corchorus olitorius HOM05D001813 ORTHO05D008124 2.6e-23 111.7 79 68.4
Glyma.20G053200 Glycine max HOM05D001813 ORTHO05D008124 2.6e-23 111.7 79 67.1
VMungo0540G0768 Vigna mungo HOM05D001813 ORTHO05D008124 2.6e-23 111.7 79 64.6
Carub.0006s1936 Capsella rubella HOM05D001813 ORTHO05D008124 3.4e-23 111.3 76 69.7
Phvul.L003537 Phaseolus vulgaris HOM05D001813 ORTHO05D008124 3.4e-23 111.3 79 64.6
Sc06g0006200 Simmondsia chinensis HOM05D001813 ORTHO05D008124 3.4e-23 111.3 79 65.8
Thecc.09G336900 Theobroma cacao HOM05D001813 ORTHO05D008124 3.4e-23 111.3 79 68.4
Ah.08g222760 Amaranthus hybridus HOM05D001813 ORTHO05D008124 4.5e-23 110.9 79 63.3
C09p55020 Brassica napus HOM05D001813 ORTHO05D008124 4.5e-23 110.9 76 69.7
BolC9t58365H Brassica oleracea HOM05D001813 ORTHO05D008124 4.5e-23 110.9 76 69.7
HanXRQChr03g0084001 Helianthus annuus HOM05D001813 ORTHO05D008124 4.5e-23 110.9 78 64.1
SGA_v2.0_scaffold79G25520 Striga asiatica HOM05D001813 ORTHO05D008124 4.5e-23 110.9 74 67.6
AUR62001609 Chenopodium quinoa HOM05D001813 ORTHO05D008124 5.9e-23 110.5 79 63.3
Sp6g23480 Schrenkiella parvula HOM05D001813 ORTHO05D008124 7.7e-23 110.2 75 68.0
BcaC04g19501 Brassica carinata HOM05D001813 ORTHO05D008124 1.0e-22 109.8 76 68.4
THA.LOC104810965 Tarenaya hassleriana HOM05D001813 ORTHO05D008124 1.0e-22 109.8 76 65.8
AL6G32610 Arabidopsis lyrata HOM05D001813 ORTHO05D008124 1.3e-22 109.4 76 67.1
CiPaw.13G120200 Carya illinoinensis HOM05D001813 ORTHO05D008124 1.3e-22 109.4 79 67.1
Eucgr.J00623 Eucalyptus grandis HOM05D001813 ORTHO05D008124 1.3e-22 109.4 79 65.8
Thhalv10013841m.g Eutrema salsugineum HOM05D001813 ORTHO05D008124 1.3e-22 109.4 76 69.7
Haze_23659 Corylus avellana HOM05D001813 ORTHO05D008124 1.7e-22 109.0 79 67.1
Gohir.A03G035300 Gossypium hirsutum HOM05D001813 ORTHO05D008124 2.2e-22 108.6 79 67.1
AT5G21060 Arabidopsis thaliana HOM05D001813 ORTHO05D008124 3.8e-22 107.8 76 67.1
FAN16G2170 Fragaria x ananassa HOM05D001813 ORTHO05D008124 3.8e-22 107.8 79 65.8
FAN25G0391 Fragaria x ananassa HOM05D001813 ORTHO05D008124 3.8e-22 107.8 79 65.8
ClCG03G014190 Citrullus lanatus HOM05D001813 ORTHO05D008124 6.5e-22 107.1 76 61.8
FvH4_3g27120 Fragaria vesca HOM05D001813 ORTHO05D008124 6.5e-22 107.1 79 64.6
FAN11G0469 Fragaria x ananassa HOM05D001813 ORTHO05D008124 6.5e-22 107.1 79 64.6
PSO675G1710 Papaver somniferum HOM05D001813 ORTHO05D008124 6.5e-22 107.1 76 69.7
CsaV3_1G042050 Cucumis sativus L. HOM05D001813 ORTHO05D008124 8.5e-22 106.7 78 61.5
Hund18828 Selenicereus undatus HOM05D001813 ORTHO05D008124 8.5e-22 106.7 76 63.2
RcHm_v2.0_Chr5g0049661 Rosa chinensis HOM05D001813 ORTHO05D008124 1.1e-21 106.3 79 65.8
MELO3C029399.2 Cucumis melo HOM05D001813 ORTHO05D008124 1.4e-21 105.9 78 61.5
FAN21G3701 Fragaria x ananassa HOM05D001813 ORTHO05D008124 1.4e-21 105.9 79 64.6
Cpa.g.sc103.70 Carica papaya HOM05D001813 ORTHO05D008124 1.9e-21 105.5 79 64.6
PGR119G1182 Punica granatum HOM05D001813 ORTHO05D008124 2.5e-21 105.1 79 60.8
EL10Ac7g16223 Beta vulgaris HOM05D001813 ORTHO05D008124 4.2e-21 104.4 79 59.5
Os12g0125400 Oryza sativa ssp. japonica HOM05D001813 ORTHO05D008124 4.2e-21 104.4 76 64.5
Duzib168G1187 Durio zibethinus HOM05D001813 ORTHO05D008124 7.2e-21 103.6 79 64.6
Os11g0128800 Oryza sativa ssp. japonica HOM05D001813 ORTHO05D008124 7.2e-21 103.6 76 63.2
HPP92_018006 Vanilla planifolia HOM05D001813 ORTHO05D008124 1.6e-20 102.4 79 57.0
Sed0003336 Sechium edule HOM05D001813 ORTHO05D008124 7.9e-20 100.1 76 57.9
ATR0068G110 Amborella trichopoda HOM05D001813 ORTHO05D008124 2.0e-18 95.5 76 59.2
SHI04312 Sapria himalayana HOM05D001813 ORTHO05D008124 8.2e-17 90.1 79 57.0
SMO364G0184 Selaginella moellendorffii HOM05D001813 ORTHO05D008124 3.8e-14 81.3 77 50.6
HPP92_026681 Vanilla planifolia HOM05D001813 ORTHO05D008124 1.1e-13 79.7 79 48.1
AagrBONN_evm.TU.Sc2ySwM_228.5806 Anthoceros agrestis HOM05D001813 ORTHO05D008124 3.6e-12 74.7 77 44.2
QL10p058201 Quercus lobata HOM05D001813 ORTHO05D008124 2.3e-11 72.0 56 60.7
CBR_g24080 Chara braunii HOM05D001813 ORTHO05D008124 4.0e-11 71.2 77 45.5
TPR.G19398 Trifolium pratense HOM05D001813 ORTHO05D008124 1.5e-10 69.3 55 52.7
Pp3c25_5840 Physcomitrium patens HOM05D001813 ORTHO05D004073 1.1e-08 63.2 76 46.1
PSO170G3583 Papaver somniferum HOM05D001813 ORTHO05D004073 3.1e-08 61.6 79 44.3
Mapoly0016s0043 Marchantia polymorpha HOM05D001813 ORTHO05D004073 9.1e-08 60.1 76 42.1
unitig_37.g13078 Utricularia gibba HOM05D001813 ORTHO05D004073 9.1e-08 60.1 75 44.0
Pp3c16_8500 Physcomitrium patens HOM05D001813 ORTHO05D004073 1.2e-07 59.7 76 43.4
Psat5g099120 Pisum sativum HOM05D001813 ORTHO05D004073 1.2e-07 59.7 77 44.2
Mapoly0016s0044 Marchantia polymorpha HOM05D001813 ORTHO05D004073 1.6e-07 59.3 75 41.3
Pp3c25_5870 Physcomitrium patens HOM05D001813 ORTHO05D004073 1.6e-07 59.3 76 44.7
CBR_g26412 Chara braunii HOM05D001813 ORTHO05D004073 2.0e-07 58.9 76 39.5
PSO017G5299 Papaver somniferum HOM05D001813 ORTHO05D004073 4.5e-07 57.8 76 46.1
PSO170G5669 Papaver somniferum HOM05D001813 ORTHO05D004073 4.5e-07 57.8 76 46.1
Cc10_g08630 Coffea canephora HOM05D001813 ORTHO05D004073 5.9e-07 57.4 75 45.3
Phvul.001G265600 Phaseolus vulgaris HOM05D001813 ORTHO05D004073 7.7e-07 57.0 75 41.3
Nn2g12417 Nelumbo nucifera HOM05D001813 ORTHO05D004073 1.0e-06 56.6 75 44.0
MSTRG.25497 Avicennia marina HOM05D001813 ORTHO05D004073 1.3e-06 56.2 75 45.3
CAN.G83.2 Capsicum annuum HOM05D001813 ORTHO05D004073 1.7e-06 55.8 75 42.7
VMungo1383G2091 Vigna mungo HOM05D001813 ORTHO05D004073 2.2e-06 55.5 75 38.7
SalBow6G6680 Salvia bowleyana HOM05D001813 ORTHO05D004073 2.9e-06 55.1 75 44.0
Sc19g0000480 Simmondsia chinensis HOM05D001813 ORTHO05D004073 2.9e-06 55.1 75 42.7
CDE04G0141 Ceratophyllum demersum HOM05D001813 ORTHO05D004073 3.8e-06 54.7 75 41.3
Phvul.011G012000 Phaseolus vulgaris HOM05D001813 ORTHO05D004073 3.8e-06 54.7 75 42.7
PGR042G3523 Punica granatum HOM05D001813 ORTHO05D004073 3.8e-06 54.7 77 41.6
TPR.G30756 Trifolium pratense HOM05D001813 ORTHO05D004073 3.8e-06 54.7 75 40.0
Lj4g0024431 Lotus japonicus HOM05D001813 ORTHO05D004073 5.0e-06 54.3 75 41.3
MBI01_g01228_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D004073 5.0e-06 54.3 75 42.7
Peaxi162Scf00078g00736 Petunia axillaris HOM05D001813 ORTHO05D004073 5.0e-06 54.3 75 41.3
vmacro06015 Vaccinium macrocarpon HOM05D001813 ORTHO05D004073 5.0e-06 54.3 76 43.4
Nitab4.5_0002654g0030 Nicotiana tabacum HOM05D001813 ORTHO05D004073 6.5e-06 53.9 75 42.7
Hund21050 Selenicereus undatus HOM05D001813 ORTHO05D004073 6.5e-06 53.9 75 44.0
Aa31LG6G2270 Aethionema arabicum HOM05D001813 ORTHO05D004073 8.5e-06 53.5 75 44.0
CSS0039369 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D004073 8.5e-06 53.5 75 45.3
Carub.0001s2963 Capsella rubella HOM05D001813 ORTHO05D004073 8.5e-06 53.5 75 41.3
CAN.G14.55 Capsicum annuum HOM05D001813 ORTHO05D004073 8.5e-06 53.5 75 41.3
CiPaw.04G009200 Carya illinoinensis HOM05D001813 ORTHO05D004073 8.5e-06 53.5 77 41.6
CDE02G3059 Ceratophyllum demersum HOM05D001813 ORTHO05D004073 8.5e-06 53.5 75 40.0
Cre18.g749447 Chlamydomonas reinhardtii HOM05D001813 ORTHO05D004073 8.5e-06 53.5 75 40.0
Migut.C01380 Erythranthe guttata HOM05D001813 ORTHO05D004073 8.5e-06 53.5 75 40.0
Nn8g39938 Nelumbo nucifera HOM05D001813 ORTHO05D004073 8.5e-06 53.5 75 41.3
Rhsim03G0264300 Rhododendron simsii HOM05D001813 ORTHO05D004073 8.5e-06 53.5 76 44.7


User provided reference genes

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