Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 0.0e+00 2360.9 1184 100.0
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 0.0e+00 2335.5 1184 99.0
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 0.0e+00 2105.5 1188 90.2
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 0.0e+00 1579.7 1199 71.1
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 0.0e+00 1414.4 1201 65.8
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 0.0e+00 1404.0 1196 64.4
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 0.0e+00 1393.3 1212 65.3
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 0.0e+00 1383.2 1205 65.1
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 0.0e+00 1365.5 1201 64.0
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 2.7e-196 690.3 1292 40.0
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.6e-148 531.6 1247 36.1
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 6.4e-142 509.6 1213 35.5
Nitab4.5_0000406g0040 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.5e-117 426.8 1191 33.6
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 6.9e-112 409.8 1303 29.2
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 2.1e-108 398.3 1307 28.7
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 7.2e-85 320.1 1262 27.4
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.2e-74 286.2 1347 26.7
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 3.4e-74 284.6 1209 27.1
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 4.5e-71 274.2 1302 26.7
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 1.2e-68 266.2 1208 28.0
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 4.0e-59 234.6 1286 25.7
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 3.2e-56 224.9 1334 26.4
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 3.5e-55 221.5 1323 25.9
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.3e-54 219.5 1269 25.0
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 2.5e-53 215.3 1328 25.2
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 9.5e-53 213.4 1333 25.4
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 4.7e-52 211.1 1347 24.7
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 8.9e-51 206.8 1202 24.9
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 7.5e-50 203.8 1326 26.2
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 1.1e-48 199.9 1331 24.8
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 1.4e-48 199.5 1309 25.7
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 3.2e-48 198.4 1325 25.3
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 5.4e-48 197.6 1211 23.9
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 1.1e-45 189.9 1311 25.2
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 7.3e-45 187.2 1363 25.0
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 9.5e-45 186.8 1303 24.6
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 8.1e-44 183.7 1373 23.9
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 4.0e-43 181.4 1333 23.3
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 6.4e-41 174.1 1223 24.8
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 8.4e-41 173.7 472 33.5
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 1.9e-40 172.6 1304 25.6
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 1.9e-40 172.6 1213 23.9
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 1.9e-40 172.6 1338 24.1
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 3.2e-40 171.8 1342 24.6
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 3.2e-40 171.8 1278 24.0
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 7.1e-40 170.6 898 27.2
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 9.2e-40 170.2 1389 23.3
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 9.2e-40 170.2 1275 24.5
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 6.0e-39 167.5 1288 24.3
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 7.8e-39 167.2 1344 23.1
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.5e-37 162.9 1315 23.9
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.5e-37 162.2 1347 23.6
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 5.6e-37 161.0 1350 23.8
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 1.1e-35 156.8 1258 24.2
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.8e-35 156.0 1321 24.2
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.0e-35 154.8 1353 22.7
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 5.3e-35 154.5 1284 23.2
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.2e-34 153.3 1281 23.2
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 7.6e-34 150.6 1211 24.0
Oeu015740.1 Olea europaea HOM05D004021 ORTHO05D003767 7.6e-34 150.6 427 31.4
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 7.1e-32 144.1 1292 24.2
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 2.1e-31 142.5 1281 23.2
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.3e-30 139.8 1310 23.1
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 8.7e-30 137.1 1291 24.6
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 1.9e-29 136.0 1303 23.7
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 2.4e-27 129.0 1255 22.9
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 2.0e-26 125.9 1048 24.0
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 2.6e-26 125.6 517 28.4
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 4.5e-26 124.8 1112 23.5
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 5.8e-26 124.4 1234 22.3
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 9.9e-26 123.6 1306 23.5
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.3e-25 123.2 1306 22.7
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.7e-25 122.9 1258 23.3
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 4.9e-25 121.3 1237 22.0
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 8.4e-25 120.6 1279 24.0
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 1.1e-24 120.2 1179 22.1
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 1.1e-24 120.2 1291 24.0
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 2.4e-24 119.0 1285 23.5
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 3.2e-24 118.6 1282 24.0
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 3.2e-24 118.6 1272 23.6
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 3.2e-24 118.6 1238 22.4
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 7.1e-24 117.5 1250 21.6
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 7.1e-24 117.5 1305 22.6
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 7.1e-24 117.5 1303 23.4
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 2.7e-23 115.5 1258 23.0
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 4.6e-23 114.8 1282 23.1
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 4.6e-23 114.8 1298 24.0
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 4.6e-23 114.8 1287 22.5
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 6.0e-23 114.4 1202 22.5
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 6.0e-23 114.4 1202 22.5
PGSC0003DMG400005497 Solanum tuberosum HOM05D026527 ORTHO05D037674 6.0e-23 114.4 589 26.5
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 7.9e-23 114.0 1202 23.2
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.3e-22 113.2 1237 23.0
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 1.8e-22 112.8 1280 23.2
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 3.9e-22 111.7 621 27.5
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 3.9e-22 111.7 1273 22.0
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 5.1e-22 111.3 807 25.4
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 6.7e-22 110.9 1198 22.0
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 8.7e-22 110.5 1266 22.4
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 8.7e-22 110.5 214 35.5
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 1.9e-21 109.4 1198 21.9
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 1.6e-20 106.3 1190 21.6
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 2.1e-20 105.9 1239 22.2
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 4.8e-20 104.8 1305 22.4
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 2.4e-19 102.4 1227 22.7
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 5.3e-19 101.3 432 28.0
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 1.5e-18 99.8 1315 21.7
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 2.0e-18 99.4 1265 22.1
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 3.4e-18 98.6 1370 21.8
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 2.2e-17 95.9 1270 22.5
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 2.2e-17 95.9 441 26.5
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 2.2e-17 95.9 1132 23.1
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 1.1e-16 93.6 1215 22.1
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.4e-16 93.2 546 27.3
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 5.5e-16 91.3 1196 22.3
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 1.6e-15 89.7 1277 21.8
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 1.6e-15 89.7 1184 23.1
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 1.6e-15 89.7 1259 21.8
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 2.1e-15 89.4 1184 23.2
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.1e-15 89.4 1280 21.8
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 2.7e-15 89.0 1218 22.0
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 3.5e-15 88.6 1184 23.1
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 3.5e-15 88.6 114 43.0
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 3.5e-15 88.6 125 42.4
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 3.0e-14 85.5 109 39.4
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 8.7e-14 84.0 90 44.4
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 8.7e-14 84.0 90 44.4
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 8.7e-14 84.0 118 39.8
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 2.5e-13 82.4 1001 23.1
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 2.5e-13 82.4 208 30.3
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 4.3e-13 81.6 1226 22.2
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 7.4e-13 80.9 88 44.3
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 7.4e-13 80.9 1208 21.2
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 9.6e-13 80.5 352 26.7
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 9.6e-13 80.5 548 26.3
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 9.6e-13 80.5 113 46.0
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 1.3e-12 80.1 676 23.8
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 2.8e-12 79.0 1193 22.8
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 1.8e-11 76.3 181 32.0
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 9.0e-11 73.9 90 41.1
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 2.0e-10 72.8 82 45.1
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 5.8e-10 71.2 187 27.3
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 2.2e-09 69.3 342 26.3
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 2.9e-09 68.9 305 27.2
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 5.0e-09 68.2 104 35.6
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 8.4e-09 67.4 226 28.3
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 2.5e-08 65.9 91 38.5
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 5.5e-08 64.7 118 34.7
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 5.5e-08 64.7 195 28.2
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 7.1e-08 64.3 769 22.8
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 9.3e-08 63.9 139 32.4
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 1.6e-07 63.2 116 36.2
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 2.1e-07 62.8 76 40.8
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 2.7e-07 62.4 70 42.9
HanXRQChr09g0276591 Helianthus annuus HOM05D004021 ORTHO05D003767 3.5e-07 62.0 415 26.3
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 4.6e-07 61.6 677 24.1
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 4.6e-07 61.6 70 42.9
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 6.1e-07 61.2 221 25.3
Lj8P589T28 Lonicera japonica HOM05D004021 ORTHO05D003767 3.9e-06 58.5 365 21.6
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 6.7e-06 57.8 799 20.0


User provided reference genes

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