Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 7.4e-289 996.5 502 100.0
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 2.6e-286 988.0 502 99.4
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 2.5e-276 954.9 502 96.0
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 2.7e-251 871.7 502 88.6
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 2.6e-249 865.1 502 87.5
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 8.0e-235 817.0 504 83.1
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 3.0e-181 639.0 493 64.7
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 8.1e-179 630.9 499 64.7
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 3.4e-177 625.5 510 67.3
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 1.3e-176 623.6 473 67.0
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 1.4e-175 620.2 503 64.8
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 9.3e-175 617.5 503 63.2
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 9.0e-170 600.9 492 62.4
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 1.5e-169 600.1 505 63.4
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 4.9e-168 595.1 494 62.8
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 1.1e-167 594.0 498 62.4
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 1.9e-167 593.2 496 62.3
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 2.4e-167 592.8 494 62.1
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 9.3e-167 590.9 488 63.3
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 6.0e-166 588.2 493 61.5
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 1.8e-165 586.6 493 61.5
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 2.3e-165 586.3 490 61.4
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 3.9e-165 585.5 492 62.6
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 8.7e-165 584.3 489 63.4
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 2.5e-164 582.8 438 66.7
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 4.3e-164 582.0 486 62.6
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 5.6e-164 581.6 489 63.2
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 5.6e-164 581.6 496 60.9
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 1.3e-163 580.5 474 61.4
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.6e-163 580.1 491 62.5
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 4.8e-163 578.6 493 61.5
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 6.2e-163 578.2 495 60.6
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 1.4e-162 577.0 497 58.6
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.8e-162 576.6 495 60.4
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.8e-162 576.6 495 60.4
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.8e-162 576.6 494 60.3
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 4.0e-162 575.5 504 60.3
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 1.2e-161 573.9 486 60.1
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 1.5e-161 573.5 476 62.4
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 2.0e-161 573.2 490 62.7
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 2.0e-161 573.2 493 60.6
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 3.4e-161 572.4 502 60.0
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 2.9e-160 569.3 490 59.6
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 2.9e-160 569.3 491 60.3
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 3.8e-160 568.9 495 59.2
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 3.8e-160 568.9 491 60.5
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 6.5e-160 568.2 495 59.0
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 1.4e-159 567.0 491 59.7
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 2.5e-159 566.2 497 59.8
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 7.1e-159 564.7 590 51.5
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 1.6e-158 563.5 498 60.8
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 3.5e-158 562.4 495 58.8
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 6.0e-158 561.6 493 60.6
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 6.0e-158 561.6 487 58.9
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 1.1e-156 557.4 490 58.0
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 1.9e-156 556.6 444 64.0
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 5.7e-156 555.1 435 64.4
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 2.8e-155 552.7 437 63.2
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 1.4e-154 550.4 508 57.5
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 1.2e-153 547.4 436 64.0
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 1.5e-153 547.0 488 58.0
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 2.0e-153 546.6 496 57.7
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 3.4e-153 545.8 500 58.4
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 5.9e-153 545.0 497 58.4
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 1.7e-152 543.5 436 64.0
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 5.0e-152 542.0 481 59.5
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 5.0e-152 542.0 468 59.8
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 1.4e-151 540.4 496 57.7
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 7.2e-151 538.1 492 58.5
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 1.0e-149 534.3 488 57.4
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.0e-149 534.3 480 57.9
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 3.9e-149 532.3 439 63.8
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 4.3e-148 528.9 497 57.9
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 9.7e-148 527.7 447 60.6
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.8e-146 523.5 471 56.7
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.2e-145 520.8 490 55.7
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 3.8e-144 515.8 451 60.1
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 6.5e-144 515.0 486 56.8
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 6.5e-144 515.0 496 56.0
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 6.5e-144 515.0 496 56.0
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 8.5e-144 514.6 497 56.1
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 1.9e-143 513.5 510 55.5
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 2.5e-143 513.1 478 57.1
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 2.7e-142 509.6 431 60.3
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 6.1e-142 508.4 497 54.3
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 1.4e-141 507.3 480 56.5
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 1.4e-141 507.3 451 59.4
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 1.8e-141 506.9 416 61.5
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 1.8e-141 506.9 499 56.3
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 2.3e-141 506.5 433 59.4
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 3.0e-141 506.1 472 55.3
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 8.8e-141 504.6 515 53.6
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 3.3e-140 502.7 484 55.4
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 7.4e-140 501.5 499 53.9
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 1.7e-139 500.4 479 55.3
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 1.7e-139 500.4 438 58.4
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 4.8e-139 498.8 505 52.5
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 1.2e-137 494.2 500 53.8
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 2.0e-137 493.4 424 60.8
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 2.6e-137 493.0 506 53.2
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 4.2e-135 485.7 498 53.4
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 2.7e-134 483.0 498 53.2
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 8.0e-134 481.5 512 51.8
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 1.4e-133 480.7 502 51.4
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 3.0e-133 479.6 454 58.4
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 5.2e-133 478.8 449 56.1
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 2.0e-132 476.9 466 54.7
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 3.7e-131 472.6 497 53.3
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 1.1e-130 471.1 497 52.1
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 1.1e-130 471.1 454 54.2
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 1.9e-127 460.3 509 50.3
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 8.8e-125 451.4 427 56.4
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 7.5e-124 448.4 408 57.4
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 2.0e-121 440.3 497 50.9
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 1.1e-119 434.5 400 59.0
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 1.2e-116 424.5 386 58.5
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 3.5e-113 412.9 322 62.4
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 3.8e-112 409.5 415 55.4
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 9.5e-111 404.8 430 53.0
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 1.6e-110 404.1 331 61.9
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 9.8e-108 394.8 476 47.7
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 2.1e-102 377.1 315 60.6
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 4.0e-101 372.9 427 51.1
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 3.3e-95 353.2 483 43.5
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 6.2e-94 349.0 363 54.8
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 2.9e-91 340.1 310 57.4
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 6.0e-89 332.4 478 40.8
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 2.0e-84 317.4 419 43.9
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 6.0e-81 305.8 194 75.8
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 4.9e-75 286.2 293 52.6
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 7.1e-74 282.3 313 48.9
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 5.1e-72 276.2 283 50.9
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 3.4e-68 263.5 288 52.4
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 3.8e-67 260.0 491 33.8
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 9.3e-66 255.4 238 59.7
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 7.8e-65 252.3 188 65.4
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 1.6e-49 201.4 195 56.4
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 3.9e-48 196.8 125 73.6
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 1.0e-40 172.2 320 32.5
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 1.1e-39 168.7 278 37.1
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 4.5e-36 156.8 150 58.7
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 1.4e-29 135.2 242 34.7
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.9e-26 124.8 89 62.9
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 3.6e-25 120.6 84 66.7
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 2.0e-23 114.8 80 62.5
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.5e-18 98.6 125 48.0
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 3.0e-16 90.9 155 38.1
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 6.7e-16 89.7 66 63.6
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 8.8e-16 89.4 65 64.6
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 4.4e-15 87.0 65 63.1
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 2.9e-11 74.3 57 64.9
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 2.5e-10 71.2 46 67.4
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 7.5e-07 59.7 391 22.3
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 4.8e-06 57.0 31 74.2
Zm00001eb140800 Zea mays HOM05D000433 ORTHO05D000443 4.8e-06 57.0 124 33.9
Zm00001eb318140 Zea mays HOM05D000433 ORTHO05D000443 8.3e-06 56.2 213 29.6


User provided reference genes

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