Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 1.3e-146 523.1 284 100.0
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 7.9e-139 497.3 289 93.1
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 1.3e-133 479.9 291 88.3
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 4.9e-104 381.7 284 73.6
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 2.3e-98 362.8 285 71.6
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 7.8e-94 347.8 290 67.2
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 1.1e-58 231.1 253 53.0
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 7.6e-57 224.9 244 53.7
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 5.6e-52 208.8 241 50.6
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 5.6e-52 208.8 245 51.0
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 3.6e-51 206.1 251 49.8
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 3.6e-51 206.1 236 53.0
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 1.8e-50 203.8 247 48.6
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 1.2e-49 201.1 242 50.8
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 1.7e-48 197.2 251 48.2
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 1.7e-48 197.2 258 49.2
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 6.4e-48 195.3 257 48.2
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 1.3e-45 187.6 243 48.1
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 6.7e-45 185.3 242 46.7
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 8.7e-45 184.9 235 48.5
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 1.5e-44 184.1 305 39.3
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 7.4e-44 181.8 245 47.8
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 9.6e-44 181.4 250 48.4
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 4.0e-42 176.0 236 47.5
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 1.5e-41 174.1 262 45.0
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 1.9e-39 167.2 234 46.6
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 1.9e-39 167.2 240 46.2
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 1.9e-39 167.2 243 43.2
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 2.1e-38 163.7 237 46.4
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 3.5e-38 162.9 244 43.4
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 7.9e-38 161.8 212 45.8
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 8.7e-37 158.3 248 45.6
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 1.1e-36 157.9 234 45.7
HanXRQChr14g0445691 Helianthus annuus HOM05D008415 ORTHO05D010601 1.9e-36 157.1 245 42.9
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 9.6e-36 154.8 248 44.0
Haze_23892 Corylus avellana HOM05D008415 ORTHO05D010601 1.1e-34 151.4 241 43.6
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 1.8e-34 150.6 244 41.8
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 5.0e-32 142.5 233 41.6
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 3.2e-31 139.8 235 40.9
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 1.1e-28 131.3 117 55.6
CSS0005479 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 1.9e-28 130.6 201 43.8
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 2.5e-28 130.2 444 28.6
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 3.3e-28 129.8 444 28.6
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 1.6e-27 127.5 210 41.0
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 5.0e-24 115.9 187 43.9
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 3.6e-22 109.8 92 57.6
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 2.6e-20 103.6 94 54.3
CiPaw.14G078500 Carya illinoinensis HOM05D008415 ORTHO05D010601 3.3e-20 103.2 104 54.8
Potri.016G129250 Populus trichocarpa HOM05D008415 ORTHO05D010601 2.8e-19 100.1 221 36.2
Cc07_g02980 Coffea canephora HOM05D008415 ORTHO05D010601 2.4e-18 97.1 81 56.8
TPR.G15532 Trifolium pratense HOM05D008415 ORTHO05D010601 1.4e-15 87.8 116 47.4
Os03g0288900 Oryza sativa ssp. japonica HOM05D008415 ORTHO05D010601 2.3e-13 80.5 129 40.3
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 8.8e-13 78.6 98 42.9
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 3.3e-12 76.6 123 36.6
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.8e-11 73.6 175 34.3
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 4.8e-11 72.8 246 28.5
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 6.3e-11 72.4 204 31.9
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 6.3e-11 72.4 91 40.7
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 6.3e-11 72.4 190 30.5
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.1e-10 71.6 192 31.8
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 1.4e-10 71.2 80 42.5
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.4e-10 71.2 89 46.1
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.4e-10 71.2 122 34.4
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 1.8e-10 70.9 235 30.2
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.4e-10 70.5 181 30.9
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 3.1e-10 70.1 92 39.1
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 7.0e-10 68.9 197 31.0
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 7.0e-10 68.9 165 33.9
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 7.0e-10 68.9 223 26.9
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 7.0e-10 68.9 227 28.2
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 9.1e-10 68.6 180 29.4
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 9.1e-10 68.6 169 34.3
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 9.1e-10 68.6 217 30.4
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 9.1e-10 68.6 196 31.1
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 9.1e-10 68.6 191 29.3
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 9.1e-10 68.6 160 32.5
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.2e-09 68.2 192 30.7
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 1.6e-09 67.8 159 35.2
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 2.0e-09 67.4 191 29.8
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 2.0e-09 67.4 181 31.5
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 2.0e-09 67.4 182 33.0
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 2.6e-09 67.0 186 30.6
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 2.6e-09 67.0 185 30.3
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 3.5e-09 66.6 209 31.6
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.5e-09 66.6 192 30.2
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 5.9e-09 65.9 134 31.3
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 5.9e-09 65.9 191 33.0
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 7.7e-09 65.5 179 31.3
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 1.0e-08 65.1 164 31.1
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 1.0e-08 65.1 186 30.1
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.3e-08 64.7 190 31.1
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 1.7e-08 64.3 180 27.2
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 1.7e-08 64.3 205 30.2
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 1.7e-08 64.3 200 29.5
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 1.7e-08 64.3 186 31.2
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 1.7e-08 64.3 159 34.0
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 2.2e-08 63.9 206 30.6
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 2.2e-08 63.9 160 31.2
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 2.9e-08 63.5 194 28.9
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 2.9e-08 63.5 172 30.2
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 2.9e-08 63.5 180 34.4
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 2.9e-08 63.5 179 33.0
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 2.9e-08 63.5 197 27.9
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 3.8e-08 63.2 198 28.8
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 3.8e-08 63.2 189 29.1
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 5.0e-08 62.8 198 27.3
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 5.0e-08 62.8 199 28.6
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 5.0e-08 62.8 198 28.3
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 5.0e-08 62.8 172 29.1
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 5.0e-08 62.8 214 33.2
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 6.5e-08 62.4 180 30.0
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 6.5e-08 62.4 212 26.9
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 6.5e-08 62.4 210 31.0
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 6.5e-08 62.4 140 31.4
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 6.5e-08 62.4 101 34.7
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 8.5e-08 62.0 178 30.9
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 8.5e-08 62.0 198 27.3
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 8.5e-08 62.0 173 31.2
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 8.5e-08 62.0 177 31.1
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 8.5e-08 62.0 198 29.3
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 1.1e-07 61.6 199 29.6
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 1.1e-07 61.6 164 32.3
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 1.1e-07 61.6 104 32.7
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 1.1e-07 61.6 168 29.8
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.1e-07 61.6 177 31.6
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 1.5e-07 61.2 174 32.2
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.5e-07 61.2 173 31.8
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 1.5e-07 61.2 202 31.7
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 1.9e-07 60.8 192 30.7
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 1.9e-07 60.8 180 33.9
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 1.9e-07 60.8 194 30.9
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 2.5e-07 60.5 189 36.0
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.5e-07 60.5 192 27.1
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 3.2e-07 60.1 181 32.6
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 4.2e-07 59.7 198 31.8
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 4.2e-07 59.7 154 29.2
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 9.4e-07 58.5 211 27.0
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 9.4e-07 58.5 97 38.1
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 1.2e-06 58.2 218 28.0
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.2e-06 58.2 195 28.7
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.2e-06 58.2 185 29.7
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.2e-06 58.2 185 29.7
Thecc.09G258600 Theobroma cacao HOM05D008415 ORTHO05D010601 1.2e-06 58.2 173 33.5
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 1.6e-06 57.8 172 29.1
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 1.6e-06 57.8 159 34.6
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 2.1e-06 57.4 204 29.4
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 2.7e-06 57.0 217 27.6
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 2.7e-06 57.0 169 32.0
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 3.6e-06 56.6 194 30.9
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 3.6e-06 56.6 167 29.3
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 4.7e-06 56.2 146 34.2
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 4.7e-06 56.2 200 27.5
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 6.1e-06 55.8 194 29.9
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 6.1e-06 55.8 166 27.1
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 6.1e-06 55.8 176 26.7
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 8.0e-06 55.5 193 29.0
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 8.0e-06 55.5 195 27.7


User provided reference genes

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