Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 0.0e+00 1333.2 686 100.0
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 0.0e+00 1310.8 686 98.3
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 0.0e+00 1237.6 723 89.5
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 0.0e+00 1084.7 699 81.1
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 4.6e-310 1067.4 727 78.1
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 6.5e-304 1047.0 640 85.5
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 1.0e-293 1013.1 621 84.7
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 3.5e-265 918.3 683 70.0
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 2.4e-258 895.6 676 69.1
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 5.4e-258 894.4 700 67.9
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 5.6e-255 884.4 683 67.1
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.4e-253 879.8 683 67.2
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 3.1e-253 878.6 677 67.1
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 2.6e-252 875.5 681 67.0
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 4.4e-252 874.8 707 66.1
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 6.4e-251 870.9 680 66.9
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 1.1e-250 870.2 678 66.8
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 2.4e-250 869.0 684 67.0
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 3.6e-246 855.1 680 64.9
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 6.2e-246 854.4 688 65.3
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 1.8e-245 852.8 685 64.4
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 1.2e-244 850.1 685 65.1
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 9.8e-244 847.0 676 65.2
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 1.3e-243 846.7 681 65.8
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 4.9e-243 844.7 728 63.0
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 1.1e-242 843.6 672 65.5
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 2.4e-242 842.4 680 64.3
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 9.2e-242 840.5 686 64.1
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 2.1e-241 839.3 676 63.5
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 2.7e-241 839.0 685 63.9
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 1.0e-240 837.0 685 63.9
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 1.9e-239 832.8 685 63.8
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 4.0e-237 825.1 678 62.4
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 1.2e-236 823.5 682 62.0
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 1.3e-235 820.1 684 63.2
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 2.2e-235 819.3 673 63.9
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 2.2e-235 819.3 689 63.0
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 1.0e-232 810.4 685 61.6
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 1.6e-230 803.1 681 62.6
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 3.6e-230 802.0 689 62.4
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 3.4e-228 795.4 685 62.6
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 7.6e-228 794.3 669 61.9
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 4.9e-227 791.6 688 61.2
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 1.9e-226 789.6 667 61.5
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 4.2e-226 788.5 677 60.9
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 5.4e-226 788.1 597 67.7
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 5.4e-226 788.1 684 60.5
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 2.3e-224 782.7 685 60.1
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 3.0e-224 782.3 675 61.2
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 5.6e-223 778.1 675 61.3
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 5.6e-223 778.1 681 60.4
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 2.1e-222 776.2 677 60.1
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 3.6e-222 775.4 683 61.3
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 4.8e-222 775.0 672 60.7
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 1.4e-221 773.5 680 60.1
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 6.9e-221 771.2 682 58.8
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 3.4e-220 768.8 676 60.5
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 5.8e-220 768.1 676 60.5
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 1.7e-219 766.5 637 63.3
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.1e-218 763.8 680 60.1
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 1.4e-218 763.5 676 59.2
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 8.7e-216 754.2 677 59.2
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 1.9e-215 753.1 682 58.2
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 3.3e-215 752.3 683 58.1
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 2.1e-214 749.6 678 59.1
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 4.0e-213 745.3 679 58.0
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 9.0e-213 744.2 682 57.8
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 3.8e-211 738.8 678 57.8
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 2.4e-210 736.1 673 59.0
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 4.2e-210 735.3 678 57.5
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 4.2e-210 735.3 687 57.5
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 6.0e-209 731.5 680 57.8
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 1.3e-208 730.3 680 57.6
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 1.8e-205 719.9 680 56.9
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 5.8e-204 714.9 595 63.5
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 1.4e-202 710.3 483 73.5
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 2.3e-200 703.0 664 56.8
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 2.5e-199 699.5 601 61.2
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 1.6e-198 696.8 679 57.6
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 2.8e-198 696.0 676 55.2
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 9.3e-194 681.0 680 55.6
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 2.1e-193 679.9 681 55.2
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 2.7e-193 679.5 683 54.8
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 1.8e-189 666.8 609 59.3
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 2.6e-188 662.9 525 65.0
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 1.4e-186 657.1 674 53.9
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 7.4e-183 644.8 713 51.8
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 5.5e-178 628.6 589 57.6
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 1.6e-177 627.1 684 51.9
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 7.9e-177 624.8 691 52.7
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 1.1e-175 620.9 690 50.6
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 6.3e-166 588.6 645 51.0
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 2.2e-158 563.5 704 47.9
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 8.3e-158 561.6 451 63.9
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 1.4e-149 534.3 620 50.0
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 5.0e-139 499.2 704 43.9
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 1.1e-130 471.5 702 44.4
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 1.5e-130 471.1 520 50.0
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 5.2e-128 462.6 301 72.8
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 1.4e-112 411.4 278 69.4
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 1.1e-109 401.7 357 55.7
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 3.4e-71 273.9 218 63.8
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 5.5e-69 266.5 310 53.5
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.1e-36 158.3 109 68.8
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.8e-36 157.9 97 75.3
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 6.8e-35 153.3 109 66.1
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 2.8e-33 147.9 456 30.9
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.7e-33 147.5 105 65.7
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.7e-25 122.1 102 58.8
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 2.4e-24 118.2 89 64.0
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 1.4e-19 102.4 200 38.5
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 2.9e-17 94.7 339 25.1
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.4e-16 92.4 49 89.8
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 1.1e-11 76.3 183 30.6
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.1e-11 74.7 62 58.1
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 6.0e-07 60.5 51 54.9


User provided reference genes

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