Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g027860 Solanum pennellii HOM05D000004 ORTHO05D022873 2.7e-42 174.9 84 100.0
Solyc01g010067.1 Solanum lycopersicum HOM05D000004 ORTHO05D000002 4.1e-19 97.8 56 71.4
Sopen04g022550 Solanum pennellii HOM05D000004 ORTHO05D000002 5.4e-19 97.4 56 69.6
Sopen10g028470 Solanum pennellii HOM05D000004 ORTHO05D000002 5.4e-19 97.4 56 73.2
Sopen02g009800 Solanum pennellii HOM05D000004 ORTHO05D022873 7.1e-19 97.1 56 71.4
Sopen01g020870 Solanum pennellii HOM05D000004 ORTHO05D000002 4.6e-18 94.4 56 69.6
Sopen07g012810 Solanum pennellii HOM05D000004 ORTHO05D000048 5.6e-16 87.4 56 69.6
CAN.G1283.2 Capsicum annuum HOM05D000004 ORTHO05D000002 4.7e-15 84.3 53 62.3
HanXRQChr15g0497421 Helianthus annuus HOM05D000004 ORTHO05D000002 5.2e-14 80.9 56 55.4
SHI02826 Sapria himalayana HOM05D000004 ORTHO05D000002 6.8e-14 80.5 55 54.5
Sopen08g010010 Solanum pennellii HOM05D000004 ORTHO05D000002 8.9e-14 80.1 45 68.9
Sopen10g019080 Solanum pennellii HOM05D000004 ORTHO05D000002 2.6e-13 78.6 56 62.5
TWI31G1488 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 7.6e-13 77.0 55 50.9
TWI34G0287 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 7.6e-13 77.0 55 50.9
TWI38G0029 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 7.6e-13 77.0 55 50.9
TWI81G0785 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 7.6e-13 77.0 55 50.9
FvH4_2g19791 Fragaria vesca HOM05D000004 ORTHO05D000002 2.2e-12 75.5 53 56.6
Manes.04G037351 Manihot esculenta HOM05D000004 ORTHO05D000002 4.9e-12 74.3 55 54.5
TWI15G0520 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 4.9e-12 74.3 55 50.9
FvH4_4g00102 Fragaria vesca HOM05D000004 ORTHO05D000002 6.4e-12 73.9 52 51.9
THA.LOC104814705 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 8.4e-12 73.6 55 52.7
Ca_07376_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.1e-11 73.2 56 46.4
ECA236G0535 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.1e-11 73.2 51 51.0
THA.LOC104809111 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 1.1e-11 73.2 56 48.2
Ca_10095_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.4e-11 72.8 52 50.0
Ca_25300_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.4e-11 72.8 56 46.4
ECA248G1045 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.9e-11 72.4 56 46.4
ECA232G4751 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.2e-11 71.6 56 46.4
ECA246G3513 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.2e-11 71.6 56 46.4
SHI52889 Sapria himalayana HOM05D000004 ORTHO05D000002 3.2e-11 71.6 55 49.1
ECA232G0632 Erigeron canadensis HOM05D003187 ORTHO05D003630 4.1e-11 71.2 56 46.4
ECA240G1063 Erigeron canadensis HOM05D000004 ORTHO05D000002 4.1e-11 71.2 51 54.9
Atru.chr10.1143 Acer truncatum HOM05D000004 ORTHO05D000002 5.4e-11 70.9 53 49.1
Ca_13623_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 5.4e-11 70.9 56 42.9
ECA234G4858 Erigeron canadensis HOM05D000006 ORTHO05D000091 5.4e-11 70.9 55 47.3
Os04g0191000 Oryza sativa ssp. japonica HOM05D000004 ORTHO05D000002 5.4e-11 70.9 54 50.0
VMungo0647G2196 Vigna mungo HOM05D000004 ORTHO05D000002 7.1e-11 70.5 52 48.1
CANSAT54G0404 Cannabis sativa HOM05D000004 ORTHO05D000002 9.2e-11 70.1 55 49.1
Hma1.2p1_1220F.1_g268080 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 9.2e-11 70.1 52 48.1
Lalb_Chr21g0319041 Lupinus albus HOM05D000004 ORTHO05D022873 9.2e-11 70.1 51 45.1
Hma1.2p1_0686F.1_g203450 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 1.2e-10 69.7 58 48.3
Lalb_Chr01g0021801 Lupinus albus HOM05D000004 ORTHO05D000002 1.2e-10 69.7 50 56.0
SGA_v2.0_scaffold107G30814 Striga asiatica HOM05D000004 ORTHO05D000002 1.2e-10 69.7 52 50.0
Hma1.2p1_0446F.1_g154680 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 1.6e-10 69.3 52 51.9
SHI41518 Sapria himalayana HOM05D000004 ORTHO05D000002 1.6e-10 69.3 55 47.3
CANSAT35G0278 Cannabis sativa HOM05D000004 ORTHO05D000002 2.1e-10 68.9 52 50.0
CAN.G824.35 Capsicum annuum HOM05D000004 ORTHO05D000002 2.1e-10 68.9 53 49.1
CAN.G845.6 Capsicum annuum HOM05D000004 ORTHO05D000002 2.1e-10 68.9 53 49.1
ECA233G4342 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.1e-10 68.9 56 44.6
Manes.14G117021 Manihot esculenta HOM05D000004 ORTHO05D000002 2.1e-10 68.9 55 45.5
Ca_13628_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 2.7e-10 68.6 56 41.1
ECA233G0465 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.5e-10 68.2 51 47.1
ECA238G2052 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.5e-10 68.2 51 47.1
Psat4g134960 Pisum sativum HOM05D000004 ORTHO05D000002 4.6e-10 67.8 48 52.1
Ca_12127_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 6.0e-10 67.4 56 42.9
ECA232G1905 Erigeron canadensis HOM05D000004 ORTHO05D000002 6.0e-10 67.4 51 52.9
FvH4_1g14571 Fragaria vesca HOM05D000004 ORTHO05D000002 6.0e-10 67.4 53 47.2
FvH4_5g33111 Fragaria vesca HOM05D000004 ORTHO05D000002 6.0e-10 67.4 52 50.0
CAN.G2095.1 Capsicum annuum HOM05D000004 ORTHO05D000002 7.8e-10 67.0 37 73.0
CAN.G464.26 Capsicum annuum HOM05D000004 ORTHO05D000002 7.8e-10 67.0 52 50.0
Lalb_Chr12g0204591 Lupinus albus HOM05D000004 ORTHO05D000002 7.8e-10 67.0 55 45.5
RcHm_v2.0_Chr2g0174581 Rosa chinensis HOM05D000004 ORTHO05D000002 1.3e-09 66.2 52 48.1
RcHm_v2.0_Chr5g0082941 Rosa chinensis HOM05D000004 ORTHO05D000002 1.3e-09 66.2 52 46.2
SHI24713 Sapria himalayana HOM05D000004 ORTHO05D000002 1.3e-09 66.2 56 42.9
FvH4_3g30422 Fragaria vesca HOM05D000004 ORTHO05D000002 1.7e-09 65.9 52 48.1
SHI44756 Sapria himalayana HOM05D000004 ORTHO05D000002 1.7e-09 65.9 56 42.9
CsaV3_UNG239520 Cucumis sativus L. HOM05D000004 ORTHO05D000002 2.3e-09 65.5 55 43.6
RcHm_v2.0_Chr3g0473251 Rosa chinensis HOM05D000004 ORTHO05D000002 2.3e-09 65.5 53 49.1
RcHm_v2.0_Chr6g0290351 Rosa chinensis HOM05D000004 ORTHO05D000002 2.3e-09 65.5 52 48.1
FvH4_6g52751 Fragaria vesca HOM05D000004 ORTHO05D000002 3.0e-09 65.1 52 48.1
Potri.006G164050 Populus trichocarpa HOM05D000004 ORTHO05D000002 3.0e-09 65.1 55 45.5
RcHm_v2.0_Chr1g0339801 Rosa chinensis HOM05D000004 ORTHO05D000002 3.0e-09 65.1 52 46.2
SHI10882 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-09 65.1 55 45.5
Ca_04715_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 3.9e-09 64.7 55 45.5
CsaV3_2G024670 Cucumis sativus L. HOM05D000004 ORTHO05D000002 3.9e-09 64.7 55 43.6
PSO170G2489 Papaver somniferum HOM05D000004 ORTHO05D000002 3.9e-09 64.7 52 46.2
PSO493G0015 Papaver somniferum HOM05D000004 ORTHO05D000002 3.9e-09 64.7 52 46.2
PSO210G2668 Papaver somniferum HOM05D000004 ORTHO05D000002 5.1e-09 64.3 52 46.2
QL01p053992 Quercus lobata HOM05D000004 ORTHO05D000002 5.1e-09 64.3 53 47.2
QL04p085052 Quercus lobata HOM05D000004 ORTHO05D000002 5.1e-09 64.3 53 47.2
Rhsim01G0051200 Rhododendron simsii HOM05D000004 ORTHO05D000002 5.1e-09 64.3 55 43.6
SHI44499 Sapria himalayana HOM05D000004 ORTHO05D000002 5.1e-09 64.3 56 42.9
CSS0050218 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 6.6e-09 63.9 53 41.5
QL08p043961 Quercus lobata HOM05D000004 ORTHO05D000002 6.6e-09 63.9 53 47.2
VMungo0331G0884 Vigna mungo HOM05D002050 ORTHO05D001949 6.6e-09 63.9 52 46.2
Rhsim01G0093500 Rhododendron simsii HOM05D000004 ORTHO05D000002 8.7e-09 63.5 56 44.6
RcHm_v2.0_Chr3g0451511 Rosa chinensis HOM05D000004 ORTHO05D000002 8.7e-09 63.5 53 43.4
SHI46300 Sapria himalayana HOM05D000004 ORTHO05D000002 8.7e-09 63.5 55 43.6
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 8.7e-09 63.5 51 49.0
CSS0043399 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.1e-08 63.2 53 41.5
QL10p040115 Quercus lobata HOM05D000004 ORTHO05D000002 1.1e-08 63.2 52 48.1
Dinv00958 Davidia involucrata HOM05D000004 ORTHO05D000002 1.5e-08 62.8 52 42.3
PSO210G3604 Papaver somniferum HOM05D000004 ORTHO05D000002 1.5e-08 62.8 55 47.3
RcHm_v2.0_Chr1g0384471 Rosa chinensis HOM05D000004 ORTHO05D000002 1.5e-08 62.8 52 38.5
CSS0036015 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.9e-08 62.4 53 41.5
FvH4_2g05351 Fragaria vesca HOM05D000004 ORTHO05D000002 1.9e-08 62.4 52 38.5
FvH4_5g24860 Fragaria vesca HOM05D000004 ORTHO05D000002 1.9e-08 62.4 52 44.2
QL02p059512 Quercus lobata HOM05D000004 ORTHO05D000002 1.9e-08 62.4 52 48.1
Rhsim06G0106900 Rhododendron simsii HOM05D000004 ORTHO05D000002 1.9e-08 62.4 52 42.3
ECA233G2466 Erigeron canadensis HOM05D000013 ORTHO05D000011 2.5e-08 62.0 51 45.1
Rhsim06G0000800 Rhododendron simsii HOM05D000004 ORTHO05D000002 2.5e-08 62.0 55 43.6
SHI49581 Sapria himalayana HOM05D000004 ORTHO05D000002 2.5e-08 62.0 55 43.6
CANSAT35G1793 Cannabis sativa HOM05D000004 ORTHO05D000002 3.3e-08 61.6 52 42.3
Manes.04G056666 Manihot esculenta HOM05D000004 ORTHO05D000002 3.3e-08 61.6 51 47.1
Rhsim11G0093400 Rhododendron simsii HOM05D000004 ORTHO05D000002 3.3e-08 61.6 55 43.6
RcHm_v2.0_Chr6g0250891 Rosa chinensis HOM05D000004 ORTHO05D000002 3.3e-08 61.6 52 42.3
Manes.09G001401 Manihot esculenta HOM05D000004 ORTHO05D000002 5.6e-08 60.8 51 49.0
PSO063G4877 Papaver somniferum HOM05D000004 ORTHO05D000002 5.6e-08 60.8 52 44.2
Rhsim04G0127100 Rhododendron simsii HOM05D000030 ORTHO05D000009 5.6e-08 60.8 55 38.2
RcHm_v2.0_Chr6g0258591 Rosa chinensis HOM05D000004 ORTHO05D000002 5.6e-08 60.8 51 45.1
CsaV3_UNG222510 Cucumis sativus L. HOM05D000004 ORTHO05D000002 7.3e-08 60.5 55 40.0
ECA247G0045 Erigeron canadensis HOM05D000004 ORTHO05D000002 7.3e-08 60.5 59 44.1
PSO170G4596 Papaver somniferum HOM05D000004 ORTHO05D000002 7.3e-08 60.5 54 48.1
QL10p043279 Quercus lobata HOM05D000004 ORTHO05D000002 9.6e-08 60.1 52 46.2
SHI02922 Sapria himalayana HOM05D000004 ORTHO05D000002 9.6e-08 60.1 53 41.5
ECA238G1236 Erigeron canadensis HOM05D000516 ORTHO05D000409 1.2e-07 59.7 59 44.1
Lalb_Chr06g0164571 Lupinus albus HOM05D000004 ORTHO05D000002 1.2e-07 59.7 56 42.9
Manes.10G127633 Manihot esculenta HOM05D000004 ORTHO05D000002 1.2e-07 59.7 55 40.0
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 1.2e-07 59.7 52 44.2
Sopen06g011160 Solanum pennellii HOM05D000004 ORTHO05D037528 1.2e-07 59.7 32 81.2
Ah.01g012700 Amaranthus hybridus HOM05D000004 ORTHO05D000002 1.6e-07 59.3 46 52.2
Lalb_Chr18g0058611 Lupinus albus HOM05D000004 ORTHO05D000002 1.6e-07 59.3 42 54.8
PSO017G0431 Papaver somniferum HOM05D000004 ORTHO05D000002 1.6e-07 59.3 57 45.6
CSS0036974 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.1e-07 58.9 53 39.6
SHI16726 Sapria himalayana HOM05D000004 ORTHO05D000002 2.1e-07 58.9 53 39.6
SHI22930 Sapria himalayana HOM05D000004 ORTHO05D000002 2.1e-07 58.9 52 46.2
Sopen07g005380 Solanum pennellii HOM05D000004 ORTHO05D000048 2.1e-07 58.9 56 42.9
CSS0011164 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.8e-07 58.5 53 39.6
PSO339G2726 Papaver somniferum HOM05D000004 ORTHO05D000002 2.8e-07 58.5 61 39.3
ECA232G1984 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.6e-07 58.2 56 44.6
ECA248G2380 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.6e-07 58.2 59 40.7
Psat5g235280 Pisum sativum HOM05D000004 ORTHO05D017104 3.6e-07 58.2 53 41.5
Psat6g119320 Pisum sativum HOM05D000004 ORTHO05D017104 3.6e-07 58.2 53 41.5
Sopen04g023950 Solanum pennellii HOM05D000004 ORTHO05D000002 3.6e-07 58.2 56 42.9
ECA234G2434 Erigeron canadensis HOM05D000004 ORTHO05D000002 4.7e-07 57.8 56 41.1
ECA246G3088 Erigeron canadensis HOM05D000004 ORTHO05D000002 4.7e-07 57.8 55 45.5
FvH4_3g42702 Fragaria vesca HOM05D000004 ORTHO05D000002 4.7e-07 57.8 52 34.6
Nn1g04536 Nelumbo nucifera HOM05D000004 ORTHO05D000002 4.7e-07 57.8 52 42.3
PSO063G4860 Papaver somniferum HOM05D000004 ORTHO05D000002 4.7e-07 57.8 52 40.4
PSO170G3513 Papaver somniferum HOM05D000004 ORTHO05D000002 4.7e-07 57.8 50 48.0
PSO764G0260 Papaver somniferum HOM05D000004 ORTHO05D000002 4.7e-07 57.8 54 46.3
Ca_03855_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 6.2e-07 57.4 41 56.1
ECA240G2083 Erigeron canadensis HOM05D000004 ORTHO05D000002 6.2e-07 57.4 56 44.6
ECA246G1944 Erigeron canadensis HOM05D000004 ORTHO05D000002 6.2e-07 57.4 52 44.2
Manes.04G009666 Manihot esculenta HOM05D000004 ORTHO05D000002 6.2e-07 57.4 52 40.4
Atru.chr1.1649 Acer truncatum HOM05D000004 ORTHO05D000002 8.1e-07 57.0 53 43.4
CSS0035406 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 8.1e-07 57.0 53 37.7
ClCG02G008780 Citrullus lanatus HOM05D000004 ORTHO05D000002 8.1e-07 57.0 53 41.5
RhsimUnG0245400 Rhododendron simsii HOM05D000004 ORTHO05D000002 8.1e-07 57.0 56 41.1
Atru.chr6.2578 Acer truncatum HOM05D000004 ORTHO05D000002 1.1e-06 56.6 53 35.8
Ah.13g069810 Amaranthus hybridus HOM05D000004 ORTHO05D000002 1.1e-06 56.6 56 41.1
AUR62042117 Chenopodium quinoa HOM05D008390 ORTHO05D000378 1.1e-06 56.6 56 39.3
Rhsim01G0254600 Rhododendron simsii HOM05D000004 ORTHO05D000002 1.1e-06 56.6 56 39.3
Sopen03g037800 Solanum pennellii HOM05D000004 ORTHO05D000002 1.1e-06 56.6 53 43.4
TWI60G0240 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 1.1e-06 56.6 53 41.5
SHI16301 Sapria himalayana HOM05D000004 ORTHO05D022873 1.4e-06 56.2 48 45.8
Atru.chr11.739 Acer truncatum HOM05D000004 ORTHO05D000002 1.8e-06 55.8 50 44.0
Hma1.2p1_0849F.1_g227950 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 1.8e-06 55.8 52 42.3
QL06p011491 Quercus lobata HOM05D000004 ORTHO05D000002 1.8e-06 55.8 53 41.5
SGA_v2.0_scaffold649G53354 Striga asiatica HOM05D000004 ORTHO05D000002 1.8e-06 55.8 56 41.1
ClCG10G008210 Citrullus lanatus HOM05D000004 ORTHO05D000002 2.4e-06 55.5 51 41.2
ECA246G0443 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.4e-06 55.5 56 42.9
Medtr7g029555 Medicago truncatula HOM05D000004 ORTHO05D000002 2.4e-06 55.5 44 45.5
SHI15107 Sapria himalayana HOM05D000004 ORTHO05D022873 2.4e-06 55.5 46 50.0
ECA238G4401 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.1e-06 55.1 55 41.8
PSO675G6456 Papaver somniferum HOM05D000004 ORTHO05D000002 3.1e-06 55.1 52 38.5
Rhsim13G0093200 Rhododendron simsii HOM05D000004 ORTHO05D000002 3.1e-06 55.1 61 39.3
Sopen12g010870 Solanum pennellii HOM05D000004 ORTHO05D000002 3.1e-06 55.1 52 40.4
ECA247G2318 Erigeron canadensis HOM05D000004 ORTHO05D000002 4.0e-06 54.7 55 40.0
Hma1.2p1_2318F.1_g319780 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 4.0e-06 54.7 45 46.7
Sopen01g025150 Solanum pennellii HOM05D000004 ORTHO05D000002 4.0e-06 54.7 53 43.4
Sopen07g020790 Solanum pennellii HOM05D000004 ORTHO05D000002 4.0e-06 54.7 52 40.4
TPR.G27698 Trifolium pratense HOM05D000004 ORTHO05D000002 4.0e-06 54.7 53 39.6
VMungo0647G1966 Vigna mungo HOM05D000518 ORTHO05D000002 5.2e-06 54.3 49 40.8
ECA232G3180 Erigeron canadensis HOM05D000004 ORTHO05D000002 6.9e-06 53.9 42 45.2
ECA232G3463 Erigeron canadensis HOM05D000924 ORTHO05D001209 6.9e-06 53.9 55 40.0
Rhsim09G0045800 Rhododendron simsii HOM05D000004 ORTHO05D000002 6.9e-06 53.9 50 40.0
RcHm_v2.0_Chr4g0399111 Rosa chinensis HOM05D000004 ORTHO05D000002 6.9e-06 53.9 53 39.6
Sopen01g025330 Solanum pennellii HOM05D000004 ORTHO05D000002 6.9e-06 53.9 53 43.4
Sopen06g014260 Solanum pennellii HOM05D000004 ORTHO05D000002 6.9e-06 53.9 53 41.5
Sopen08g020120 Solanum pennellii HOM05D000004 ORTHO05D000002 6.9e-06 53.9 53 43.4
Hma1.2p1_0298F.1_g117530 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 9.0e-06 53.5 55 41.8
PSO017G5410 Papaver somniferum HOM05D000004 ORTHO05D000002 9.0e-06 53.5 51 39.2
PSO170G4867 Papaver somniferum HOM05D000004 ORTHO05D000002 9.0e-06 53.5 48 43.8


User provided reference genes

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