Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 5.4e-63 244.2 126 100.0
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 1.7e-61 239.2 125 97.6
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.8e-61 238.0 125 98.4
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.0e-61 237.7 125 97.6
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 6.6e-61 237.3 125 97.6
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.8e-58 229.2 125 95.2
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 8.3e-56 220.3 124 92.7
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 2.4e-55 218.8 125 86.4
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 3.2e-55 218.4 125 86.4
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 1.2e-54 216.5 125 85.6
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 1.6e-54 216.1 125 85.6
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.7e-54 215.3 125 86.4
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 2.7e-54 215.3 125 84.8
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 3.5e-54 214.9 126 85.7
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 5.9e-54 214.2 125 83.2
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 5.9e-54 214.2 125 82.4
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 5.9e-54 214.2 125 84.0
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 1.0e-53 213.4 125 84.0
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 2.3e-53 212.2 126 85.7
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 2.3e-53 212.2 125 84.8
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 2.3e-53 212.2 125 82.4
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.9e-53 211.8 124 83.1
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.9e-53 211.8 126 84.9
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 3.9e-53 211.5 124 84.7
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 3.9e-53 211.5 125 82.4
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.9e-53 211.5 125 83.2
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 5.0e-53 211.1 125 84.0
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 6.6e-53 210.7 125 84.0
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 6.6e-53 210.7 125 82.4
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 6.6e-53 210.7 125 82.4
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 6.6e-53 210.7 126 84.1
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 1.5e-52 209.5 121 85.1
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.5e-52 209.5 126 86.5
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.5e-52 208.8 123 82.9
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 4.3e-52 208.0 120 85.8
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 9.5e-52 206.8 120 84.2
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 9.5e-52 206.8 123 84.6
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 2.1e-51 205.7 125 81.6
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 4.7e-51 204.5 124 80.6
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 4.7e-51 204.5 125 80.8
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 4.7e-51 204.5 118 85.6
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 6.2e-51 204.1 118 83.9
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 6.2e-51 204.1 118 83.9
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 8.0e-51 203.8 123 81.3
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.0e-50 203.4 118 83.9
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 1.0e-50 203.4 120 81.7
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 1.0e-50 203.4 120 82.5
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.8e-50 202.6 124 79.8
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 1.8e-50 202.6 121 79.3
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 3.1e-50 201.8 125 80.0
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 6.8e-50 200.7 122 80.3
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 1.2e-49 199.9 123 78.0
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.5e-49 199.5 122 80.3
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 2.0e-49 199.1 120 79.2
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 2.0e-49 199.1 123 80.5
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 2.0e-49 199.1 125 77.6
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.0e-49 199.1 120 81.7
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 4.4e-49 198.0 119 80.7
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 4.4e-49 198.0 123 78.0
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 5.8e-49 197.6 123 80.5
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 7.5e-49 197.2 123 79.7
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 1.3e-48 196.4 117 82.1
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 1.3e-48 196.4 117 82.1
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.3e-48 196.4 120 80.0
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 1.7e-48 196.1 123 79.7
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 1.7e-48 196.1 117 81.2
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 1.7e-48 196.1 117 81.2
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 1.7e-48 196.1 117 81.2
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.7e-48 196.1 118 79.7
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 1.7e-48 196.1 124 76.6
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.7e-48 194.9 127 78.0
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 3.7e-48 194.9 123 77.2
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 3.7e-48 194.9 120 79.2
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 4.9e-48 194.5 123 78.9
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 6.4e-48 194.1 120 76.7
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 6.4e-48 194.1 119 78.2
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 8.3e-48 193.7 126 77.8
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.1e-47 193.4 118 78.8
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 1.1e-47 193.4 120 77.5
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 1.1e-47 193.4 123 78.0
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 1.4e-47 193.0 117 79.5
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.9e-47 192.6 116 81.0
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 3.2e-47 191.8 126 75.4
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 5.4e-47 191.0 120 78.3
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 7.0e-47 190.7 116 79.3
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 7.0e-47 190.7 120 78.3
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.2e-46 189.9 114 81.6
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 1.2e-46 189.9 123 75.6
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 2.0e-46 189.1 123 76.4
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 2.0e-46 189.1 123 79.7
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 2.7e-46 188.7 117 76.1
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 6.0e-46 187.6 117 76.9
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 6.0e-46 187.6 117 76.9
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 7.8e-46 187.2 125 78.4
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 7.8e-46 187.2 117 77.8
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.0e-45 186.8 104 89.4
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.3e-45 186.4 108 88.0
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 1.1e-44 183.3 117 75.2
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 1.1e-44 183.3 113 80.5
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 2.5e-44 182.2 120 71.7
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 7.3e-44 180.6 117 73.5
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 2.3e-42 175.6 120 72.5
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 4.0e-42 174.9 119 73.1
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 6.8e-42 174.1 98 89.8
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 1.5e-41 172.9 120 72.5
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.5e-41 172.9 123 67.5
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 4.4e-41 171.4 98 86.7
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 9.8e-41 170.2 120 71.7
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 1.7e-40 169.5 104 76.9
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 1.7e-40 169.5 117 72.6
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 2.9e-40 168.7 120 70.0
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 4.9e-40 167.9 98 84.7
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 8.3e-40 167.2 99 84.8
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 9.2e-39 163.7 102 77.5
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 6.0e-38 161.0 89 86.5
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 1.0e-37 160.2 123 67.5
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 1.3e-37 159.8 85 90.6
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 1.7e-37 159.5 120 70.0
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 1.7e-37 159.5 130 65.4
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 2.3e-37 159.1 125 67.2
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 8.6e-37 157.1 95 83.2
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.3e-36 155.2 108 70.4
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 7.3e-36 154.1 125 65.6
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.2e-35 153.3 98 78.6
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.2e-35 153.3 98 78.6
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 3.6e-35 151.8 117 67.5
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 6.8e-34 147.5 106 68.9
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 5.8e-33 144.4 86 82.6
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 5.8e-33 144.4 99 71.7
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.3e-32 143.3 102 72.5
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 6.4e-32 141.0 83 78.3
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.9e-31 139.4 86 76.7
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.2e-30 136.7 124 60.5
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 6.0e-30 134.4 108 63.9
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 6.6e-29 131.0 112 52.7
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 1.9e-28 129.4 116 60.3
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 3.3e-28 128.6 115 53.0
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 9.6e-28 127.1 88 63.6
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 9.6e-28 127.1 61 100.0
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 1.6e-27 126.3 85 75.3
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 1.4e-26 123.2 124 49.2
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 1.8e-26 122.9 119 52.1
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 2.4e-26 122.5 88 72.7
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 1.2e-25 120.2 113 49.6
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.5e-25 119.8 120 48.3
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 5.8e-25 117.9 119 48.7
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 7.6e-25 117.5 123 48.8
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.7e-24 116.3 118 51.7
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 4.9e-24 114.8 124 50.8
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 8.4e-24 114.0 119 49.6
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 2.4e-23 112.5 131 48.9
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.6e-22 109.8 106 50.0
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 1.0e-21 107.1 76 75.0
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 3.3e-20 102.1 61 82.0
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 4.0e-10 68.6 75 49.3
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 9.9e-09 63.9 35 82.9
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 3.8e-08 62.0 53 45.3


User provided reference genes

Program Settings