Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g027600 Solanum pennellii HOM05D002687 ORTHO05D002052 8.0e-82 307.0 150 100.0
Solyc11g068893.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 9.2e-70 266.9 166 82.5
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 4.6e-45 184.9 172 59.3
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 2.3e-44 182.6 173 59.5
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 3.0e-44 182.2 172 58.7
Sopen11g027590 Solanum pennellii HOM05D002687 ORTHO05D002052 6.2e-26 121.3 113 59.3
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 3.1e-25 119.0 179 43.6
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 2.0e-24 116.3 180 42.8
Sopen06g030470 Solanum pennellii HOM05D002687 ORTHO05D002052 1.3e-23 113.6 169 40.8
Nitab4.5_0000657g0070 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.7e-23 113.2 169 40.2
PGSC0003DMG400005897 Solanum tuberosum HOM05D002687 ORTHO05D002052 1.7e-23 113.2 165 43.6
Nitab4.5_0000380g0140 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.0e-20 104.0 172 37.8
Solyc06g074050.3 Solanum lycopersicum HOM05D002687 ORTHO05D002052 3.9e-20 102.1 166 37.3
CAN.G1463.1 Capsicum annuum HOM05D002687 ORTHO05D002065 1.1e-19 100.5 77 57.1
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 2.4e-17 92.8 176 38.1
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 3.1e-17 92.4 177 37.3
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 4.1e-17 92.0 176 38.6
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 2.6e-16 89.4 170 36.5
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 1.3e-15 87.0 179 35.8
Rhsim13G0195600 Rhododendron simsii HOM05D002687 ORTHO05D002052 1.4e-14 83.6 77 48.1
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 3.2e-14 82.4 177 33.9
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 3.2e-14 82.4 170 34.7
Oeu035584.1 Olea europaea HOM05D002687 ORTHO05D002052 3.2e-14 82.4 173 37.6
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 5.5e-14 81.6 175 35.4
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 9.3e-14 80.9 78 48.7
Nn2g14281 Nelumbo nucifera HOM05D002687 ORTHO05D002052 9.3e-14 80.9 178 33.1
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 2.7e-13 79.3 79 48.1
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 3.6e-13 79.0 163 33.7
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 3.6e-13 79.0 163 33.7
ECA238G0184 Erigeron canadensis HOM05D002687 ORTHO05D002052 1.0e-12 77.4 156 39.1
Migut.N02460 Erythranthe guttata HOM05D002687 ORTHO05D002052 1.0e-12 77.4 181 34.8
SGA_v2.0_scaffold100G29631 Striga asiatica HOM05D002687 ORTHO05D002052 1.8e-12 76.6 163 35.0
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 2.3e-12 76.3 170 32.9
Oeu009048.1 Olea europaea HOM05D002687 ORTHO05D002052 2.3e-12 76.3 175 34.3
MSTRG.12384 Avicennia marina HOM05D002687 ORTHO05D002052 3.0e-12 75.9 179 36.3
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.0e-12 75.9 171 32.2
HanXRQChr12g0382031 Helianthus annuus HOM05D002687 ORTHO05D002052 3.9e-12 75.5 78 43.6
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 6.7e-12 74.7 79 46.8
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 1.9e-11 73.2 170 32.9
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 4.3e-11 72.0 168 34.5
Peaxi162Scf00170g00621 Petunia axillaris HOM05D002687 ORTHO05D002052 4.3e-11 72.0 61 52.5
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 4.3e-11 72.0 157 34.4
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 4.3e-11 72.0 145 32.4
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.7e-11 71.6 71 43.7
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 7.4e-11 71.2 79 43.0
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 9.7e-11 70.9 173 35.8
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.3e-10 70.5 160 33.8
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 1.7e-10 70.1 73 46.6
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 1.7e-10 70.1 179 33.5
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 2.2e-10 69.7 182 34.6
Gorai.001G124500 Gossypium raimondii HOM05D002687 ORTHO05D002052 2.8e-10 69.3 77 39.0
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 3.7e-10 68.9 171 32.2
TAR633G1301 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.7e-10 68.9 151 31.8
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 4.8e-10 68.6 170 29.4
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 4.8e-10 68.6 162 32.7
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 4.8e-10 68.6 169 29.0
BcaB02g10079 Brassica carinata HOM05D002687 ORTHO05D002052 6.3e-10 68.2 71 42.3
COL.COLO4_22662 Corchorus olitorius HOM05D002687 ORTHO05D002052 1.1e-09 67.4 165 32.1
THA.LOC104800513 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 1.1e-09 67.4 71 43.7
CiPaw.09G020300 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.4e-09 67.0 136 33.8
ClCG02G022410 Citrullus lanatus HOM05D002687 ORTHO05D002052 1.4e-09 67.0 167 32.9
Actinidia37067 Actinidia chinensis HOM05D002687 ORTHO05D002052 1.8e-09 66.6 149 32.2
MBI01_g04539_MAGBIO Magnolia biondii HOM05D002687 ORTHO05D002052 1.8e-09 66.6 158 32.3
Duzib170G0577 Durio zibethinus HOM05D002687 ORTHO05D002052 2.4e-09 66.2 77 39.0
BcaC02g10865 Brassica carinata HOM05D002687 ORTHO05D002052 3.1e-09 65.9 71 40.8
C04p24310 Brassica napus HOM05D002687 ORTHO05D002052 3.1e-09 65.9 71 40.8
BolC4t23929H Brassica oleracea HOM05D002687 ORTHO05D002052 3.1e-09 65.9 71 40.8
Cpa.g.sc104.46 Carica papaya HOM05D002687 ORTHO05D002052 3.1e-09 65.9 75 45.3
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 3.1e-09 65.9 76 38.2
Ciclev10029176m.g Citrus clementina HOM05D002687 ORTHO05D002052 3.1e-09 65.9 163 32.5
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.1e-09 65.9 63 49.2
TAR636G1837 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.1e-09 65.9 77 36.4
RcHm_v2.0_Chr5g0048091 Rosa chinensis HOM05D002687 ORTHO05D002052 4.1e-09 65.5 79 40.5
Ciclev10012623m.g Citrus clementina HOM05D002687 ORTHO05D002052 5.3e-09 65.1 73 45.2
AT2G27260 Arabidopsis thaliana HOM05D002687 ORTHO05D002052 6.9e-09 64.7 71 42.3
CsaV3_6G038540 Cucumis sativus L. HOM05D002687 ORTHO05D002052 6.9e-09 64.7 167 29.3
FvH4_3g26690 Fragaria vesca HOM05D002687 ORTHO05D002052 6.9e-09 64.7 67 49.3
FAN11G1248 Fragaria x ananassa HOM05D002687 ORTHO05D002052 6.9e-09 64.7 67 49.3
Gohir.A07G112600 Gossypium hirsutum HOM05D002687 ORTHO05D002052 6.9e-09 64.7 77 36.4
Thecc.09G275200 Theobroma cacao HOM05D002687 ORTHO05D002052 6.9e-09 64.7 77 39.0
TAR636G0890 Trochodendron aralioides HOM05D002687 ORTHO05D002052 6.9e-09 64.7 77 36.4
MD14G1037500 Malus domestica HOM05D002687 ORTHO05D002052 9.1e-09 64.3 166 30.7
Prupe.7G097000 Prunus persica HOM05D002687 ORTHO05D002052 9.1e-09 64.3 155 32.3
Carub.0001s0701 Capsella rubella HOM05D002687 ORTHO05D002052 1.2e-08 63.9 156 30.1
Thhalv10002076m.g Eutrema salsugineum HOM05D002687 ORTHO05D002052 1.2e-08 63.9 71 40.8
Gohir.D07G116000 Gossypium hirsutum HOM05D002687 ORTHO05D002052 1.2e-08 63.9 77 36.4
Aa31LG5G8690 Aethionema arabicum HOM05D002687 ORTHO05D002052 1.5e-08 63.5 65 41.5
AL4G21170 Arabidopsis lyrata HOM05D002687 ORTHO05D002052 1.5e-08 63.5 71 42.3
Cfa016686 Carpinus fangiana HOM05D002687 ORTHO05D002052 1.5e-08 63.5 76 42.1
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 2.0e-08 63.2 161 31.1
unitig_899.g15378 Utricularia gibba HOM05D002687 ORTHO05D002052 2.0e-08 63.2 78 42.3
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 2.6e-08 62.8 168 29.2
Lsat_1_v5_gn_3_114421 Lactuca sativa HOM05D002687 ORTHO05D002052 2.6e-08 62.8 78 39.7
CiPaw.10G094600 Carya illinoinensis HOM05D002687 ORTHO05D002052 3.4e-08 62.4 72 43.1
Medtr7g106100 Medicago truncatula HOM05D002687 ORTHO05D002052 3.4e-08 62.4 80 40.0
THA.LOC104826444 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 3.4e-08 62.4 152 31.6
A03p26690 Brassica napus HOM05D002687 ORTHO05D002052 4.5e-08 62.0 71 39.4
A07p18100 Brassica napus HOM05D002687 ORTHO05D002052 4.5e-08 62.0 71 39.4
BraA03t11881Z Brassica rapa HOM05D002687 ORTHO05D002052 4.5e-08 62.0 71 39.4
BraA07t29528Z Brassica rapa HOM05D002687 ORTHO05D002052 4.5e-08 62.0 71 39.4
Duzib150G0865 Durio zibethinus HOM05D002687 ORTHO05D002052 4.5e-08 62.0 155 30.3
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 4.5e-08 62.0 71 40.8
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 4.5e-08 62.0 71 40.8
BcaC01g04930 Brassica carinata HOM05D002687 ORTHO05D002052 5.9e-08 61.6 71 38.0
C03p31980 Brassica napus HOM05D002687 ORTHO05D002052 5.9e-08 61.6 71 38.0
BolC3t15541H Brassica oleracea HOM05D002687 ORTHO05D002052 5.9e-08 61.6 71 38.0
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 5.9e-08 61.6 167 32.3
FAN21G1704 Fragaria x ananassa HOM05D002687 ORTHO05D002052 5.9e-08 61.6 67 46.3
Gohir.D09G097800 Gossypium hirsutum HOM05D002687 ORTHO05D002052 5.9e-08 61.6 65 40.0
Gorai.006G114600 Gossypium raimondii HOM05D002687 ORTHO05D002052 5.9e-08 61.6 65 40.0
VMungo1080G0268 Vigna mungo HOM05D002687 ORTHO05D002052 5.9e-08 61.6 166 28.9
EL10Ac7g16313 Beta vulgaris HOM05D002687 ORTHO05D002052 7.7e-08 61.2 67 44.8
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 1.0e-07 60.8 168 28.0
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 1.0e-07 60.8 154 31.2
TPR.G35561 Trifolium pratense HOM05D002687 ORTHO05D002052 1.0e-07 60.8 82 36.6
TPR.G35570 Trifolium pratense HOM05D002687 ORTHO05D002052 1.0e-07 60.8 82 36.6
TPR.G35573 Trifolium pratense HOM05D002687 ORTHO05D002052 1.0e-07 60.8 82 36.6
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 1.3e-07 60.5 161 28.6
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 1.3e-07 60.5 142 31.0
FAN16G1005 Fragaria x ananassa HOM05D002687 ORTHO05D002052 1.7e-07 60.1 153 34.0
Ca_09050_v3 Cicer arietinum L. HOM05D002687 ORTHO05D002052 2.2e-07 59.7 75 40.0
Psat5g260320 Pisum sativum HOM05D002687 ORTHO05D002052 2.2e-07 59.7 77 33.8
unitig_27.g25123 Utricularia gibba HOM05D000738 ORTHO05D000675 2.2e-07 59.7 66 50.0
Glyma.13G313600 Glycine max HOM05D002687 ORTHO05D002052 2.9e-07 59.3 71 39.4
Aqoxy1G00677 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 3.8e-07 58.9 70 38.6
MSTRG.21015 Avicennia marina HOM05D002687 ORTHO05D002052 3.8e-07 58.9 171 32.7
MD12G1038800 Malus domestica HOM05D002687 ORTHO05D002052 3.8e-07 58.9 171 28.7
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 3.8e-07 58.9 159 26.4
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 3.8e-07 58.9 152 32.9
Nn6g34711 Nelumbo nucifera HOM05D002687 ORTHO05D002052 6.5e-07 58.2 77 32.5
CARHR119770 Cardamine hirsuta HOM05D002687 ORTHO05D002052 8.5e-07 57.8 71 35.2
Ca_01639_v3 Cicer arietinum L. HOM05D002687 ORTHO05D002052 8.5e-07 57.8 77 32.5
Lalb_Chr14g0376011 Lupinus albus HOM05D002687 ORTHO05D002052 8.5e-07 57.8 63 36.5
Phvul.005G120800 Phaseolus vulgaris HOM05D002687 ORTHO05D002052 8.5e-07 57.8 166 27.1
BcaB01g03060 Brassica carinata HOM05D002687 ORTHO05D002052 1.1e-06 57.4 71 38.0
BcaB01g03061 Brassica carinata HOM05D002687 ORTHO05D002052 1.1e-06 57.4 71 38.0
Lsat_1_v5_gn_3_113181 Lactuca sativa HOM05D002687 ORTHO05D002052 1.1e-06 57.4 83 30.1
Manes.09G046600 Manihot esculenta HOM05D002687 ORTHO05D002052 1.1e-06 57.4 66 43.9
TPR.G4231 Trifolium pratense HOM05D002687 ORTHO05D002052 1.1e-06 57.4 79 34.2
AUR62031792 Chenopodium quinoa HOM05D002687 ORTHO05D002052 1.4e-06 57.0 67 41.8
Lalb_Chr14g0372801 Lupinus albus HOM05D002137 ORTHO05D002144 1.4e-06 57.0 83 34.9
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 1.4e-06 57.0 143 32.2
Sp4g10070 Schrenkiella parvula HOM05D002687 ORTHO05D002052 1.4e-06 57.0 153 28.8
BcaC02g08259 Brassica carinata HOM05D002687 ORTHO05D002052 2.5e-06 56.2 138 28.3
C04p56620 Brassica napus HOM05D002687 ORTHO05D002052 2.5e-06 56.2 138 28.3
BolC4t27189H Brassica oleracea HOM05D002687 ORTHO05D002052 2.5e-06 56.2 138 28.3
AUR62001543 Chenopodium quinoa HOM05D002687 ORTHO05D002052 2.5e-06 56.2 67 41.8
CiPaw.02G139800 Carya illinoinensis HOM05D002137 ORTHO05D002144 4.2e-06 55.5 63 39.7
Lj1P303T22 Lonicera japonica HOM05D023306 ORTHO05D002052 4.2e-06 55.5 63 34.9
TPR.G35571 Trifolium pratense HOM05D002687 ORTHO05D002052 4.2e-06 55.5 69 43.5
AUR62023990 Chenopodium quinoa HOM05D002687 ORTHO05D002052 5.5e-06 55.1 67 40.3
ATR0772G197 Amborella trichopoda HOM05D002687 ORTHO05D002052 9.4e-06 54.3 71 33.8
A04p20800 Brassica napus HOM05D002687 ORTHO05D002052 9.4e-06 54.3 138 27.5
BraA04t17653Z Brassica rapa HOM05D002687 ORTHO05D002052 9.4e-06 54.3 138 27.5
MD03G1127800 Malus domestica HOM05D000980 ORTHO05D000649 9.4e-06 54.3 79 34.2
Thecc.02G080300 Theobroma cacao HOM05D017494 ORTHO05D020490 9.4e-06 54.3 71 40.8


User provided reference genes

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