Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g027510 Solanum pennellii HOM05D006311 ORTHO05D007732 7.1e-99 364.0 192 100.0
Solyc11g068790.2 Solanum lycopersicum HOM05D006311 ORTHO05D007732 4.7e-95 351.3 192 96.9
PGSC0003DMG400019619 Solanum tuberosum HOM05D006311 ORTHO05D007732 3.1e-94 348.6 192 95.8
CAN.G745.31 Capsicum annuum HOM05D006311 ORTHO05D007732 3.8e-84 315.1 197 84.8
Nitab4.5_0000893g0010 Nicotiana tabacum HOM05D006311 ORTHO05D007732 1.5e-80 303.1 192 83.9
Nitab4.5_0001135g0160 Nicotiana tabacum HOM05D006311 ORTHO05D007732 3.3e-80 302.0 194 83.0
Peaxi162Scf00224g00818 Petunia axillaris HOM05D006311 ORTHO05D007732 3.2e-75 285.4 196 78.6
Oeu048845.1 Olea europaea HOM05D006311 ORTHO05D007732 1.8e-65 253.1 200 72.5
Cc01_g08620 Coffea canephora HOM05D006311 ORTHO05D007732 5.3e-62 241.5 203 67.5
Sed0028181 Sechium edule HOM05D006311 ORTHO05D007732 1.5e-61 240.0 170 77.1
Dinv05953 Davidia involucrata HOM05D006311 ORTHO05D007732 7.6e-61 237.7 164 76.2
Cfa009969 Carpinus fangiana HOM05D006311 ORTHO05D007732 1.0e-60 237.3 160 78.8
Glyma.11G180200 Glycine max HOM05D006311 ORTHO05D007732 1.0e-60 237.3 166 74.7
Glyma.12G093300 Glycine max HOM05D006311 ORTHO05D007732 1.7e-60 236.5 166 75.9
VMungo1127G2206 Vigna mungo HOM05D006311 ORTHO05D007732 6.5e-60 234.6 152 79.6
ClCG02G022370 Citrullus lanatus HOM05D006311 ORTHO05D007732 1.1e-59 233.8 157 78.3
MELO3C014513.2 Cucumis melo HOM05D006311 ORTHO05D007732 1.1e-59 233.8 198 68.2
Psat7g187040 Pisum sativum HOM05D006311 ORTHO05D007732 1.9e-59 233.0 166 74.1
Cpa.g.sc195.39 Carica papaya HOM05D006311 ORTHO05D007732 2.5e-59 232.6 160 79.4
CsaV3_6G038500 Cucumis sativus L. HOM05D006311 ORTHO05D007732 2.5e-59 232.6 199 68.3
Rhsim01G0202100 Rhododendron simsii HOM05D006311 ORTHO05D007732 4.2e-59 231.9 171 74.3
Thecc.09G276000 Theobroma cacao HOM05D006311 ORTHO05D007732 4.2e-59 231.9 156 80.1
TAR623G0571 Trochodendron aralioides HOM05D006311 ORTHO05D007732 4.2e-59 231.9 152 80.9
CANSAT54G0913 Cannabis sativa HOM05D006311 ORTHO05D007732 5.5e-59 231.5 148 83.8
DCAR_010317 Daucus carota HOM05D006311 ORTHO05D007732 5.5e-59 231.5 163 74.8
Medtr4g052010 Medicago truncatula HOM05D006311 ORTHO05D007732 5.5e-59 231.5 156 79.5
Actinidia07269 Actinidia chinensis HOM05D006311 ORTHO05D007732 7.2e-59 231.1 173 73.4
CiPaw.13G131700 Carya illinoinensis HOM05D006311 ORTHO05D007732 7.2e-59 231.1 162 77.8
TWI31G0202 Tripterygium wilfordii HOM05D006311 ORTHO05D007732 7.2e-59 231.1 153 80.4
Lj3g0006801 Lotus japonicus HOM05D006311 ORTHO05D007732 9.4e-59 230.7 158 79.7
Lalb_Chr01g0004961 Lupinus albus HOM05D006311 ORTHO05D007732 2.1e-58 229.6 157 76.4
BcaB06g28139 Brassica carinata HOM05D006311 ORTHO05D007732 2.7e-58 229.2 161 77.6
MD11G1172600 Malus domestica HOM05D006311 ORTHO05D007732 2.7e-58 229.2 166 74.1
Migut.D02415 Erythranthe guttata HOM05D006311 ORTHO05D007732 3.6e-58 228.8 161 77.0
QL01p011364 Quercus lobata HOM05D006311 ORTHO05D007732 3.6e-58 228.8 156 78.8
Sabra09G0126500 Salix brachista HOM05D006311 ORTHO05D007732 3.6e-58 228.8 164 74.4
Atru.chr3.3143 Acer truncatum HOM05D006311 ORTHO05D007732 4.6e-58 228.4 155 79.4
CSS0008256 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 4.6e-58 228.4 203 66.0
CSS0012591 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 4.6e-58 228.4 203 66.0
TPR.G4615 Trifolium pratense HOM05D006311 ORTHO05D007732 4.6e-58 228.4 165 75.2
vmacro14327 Vaccinium macrocarpon HOM05D006311 ORTHO05D007732 6.1e-58 228.0 180 71.1
Gohir.A09G097700 Gossypium hirsutum HOM05D006311 ORTHO05D007732 7.9e-58 227.6 176 71.6
Gorai.006G114200 Gossypium raimondii HOM05D006311 ORTHO05D007732 7.9e-58 227.6 176 71.6
C04p56680 Brassica napus HOM05D006311 ORTHO05D007732 1.0e-57 227.3 164 74.4
BolC4t27200H Brassica oleracea HOM05D006311 ORTHO05D007732 1.0e-57 227.3 164 74.4
PGR119G0707 Punica granatum HOM05D006311 ORTHO05D007732 1.0e-57 227.3 158 76.6
QL01p011627 Quercus lobata HOM05D006311 ORTHO05D007732 1.0e-57 227.3 160 76.9
COL.COLO4_22654 Corchorus olitorius HOM05D006311 ORTHO05D007732 1.4e-57 226.9 161 76.4
Ciclev10029330m.g Citrus clementina HOM05D006311 ORTHO05D007732 1.8e-57 226.5 156 77.6
Gohir.D09G097500 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.8e-57 226.5 176 71.6
BcaB06g28142 Brassica carinata HOM05D006311 ORTHO05D007732 2.3e-57 226.1 164 73.8
SalBow6G1677 Salvia bowleyana HOM05D006311 ORTHO05D007732 2.3e-57 226.1 197 68.5
FvH4_3g25980 Fragaria vesca HOM05D006311 ORTHO05D007732 3.9e-57 225.3 166 74.7
FAN11G0814 Fragaria x ananassa HOM05D006311 ORTHO05D007732 3.9e-57 225.3 166 74.7
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 3.9e-57 225.3 161 76.4
Sc21g0006890 Simmondsia chinensis HOM05D006311 ORTHO05D007732 3.9e-57 225.3 186 65.6
GSVIVG01036060001 Vitis vinifera HOM05D006311 ORTHO05D007732 3.9e-57 225.3 158 77.2
BolC4t27194H Brassica oleracea HOM05D006311 ORTHO05D007732 8.8e-57 224.2 194 65.5
AL4G21210 Arabidopsis lyrata HOM05D006311 ORTHO05D007732 1.1e-56 223.8 172 72.1
HanXRQChr14g0433141 Helianthus annuus HOM05D006311 ORTHO05D007732 1.1e-56 223.8 184 69.6
Lsat_1_v5_gn_2_35940 Lactuca sativa HOM05D006311 ORTHO05D007732 1.5e-56 223.4 152 78.9
AT2G27290 Arabidopsis thaliana HOM05D006311 ORTHO05D007732 1.9e-56 223.0 172 71.5
MSTRG.21022 Avicennia marina HOM05D006311 ORTHO05D007732 1.9e-56 223.0 156 76.9
AUR62001536 Chenopodium quinoa HOM05D006311 ORTHO05D007732 1.9e-56 223.0 162 74.1
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.9e-56 223.0 166 73.5
Lalb_Chr03g0028331 Lupinus albus HOM05D006311 ORTHO05D007732 1.9e-56 223.0 170 71.2
THA.LOC104826442 Tarenaya hassleriana HOM05D006311 ORTHO05D007732 1.9e-56 223.0 162 75.9
arahy.Tifrunner.gnm1.ann1.INBK63 Arachis hypogaea HOM05D006311 ORTHO05D007732 2.5e-56 222.6 172 73.3
BcaB01g03062 Brassica carinata HOM05D006311 ORTHO05D007732 2.5e-56 222.6 173 72.8
BcaB01g03063 Brassica carinata HOM05D006311 ORTHO05D007732 2.5e-56 222.6 173 72.8
AUR62020246 Chenopodium quinoa HOM05D006311 ORTHO05D007732 2.5e-56 222.6 161 73.9
Potri.009G161800 Populus trichocarpa HOM05D006311 ORTHO05D007732 2.5e-56 222.6 168 71.4
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 3.3e-56 222.2 166 73.5
unitig_0.g1470 Utricularia gibba HOM05D006311 ORTHO05D007732 3.3e-56 222.2 150 80.0
arahy.Tifrunner.gnm1.ann1.HB0RZJ Arachis hypogaea HOM05D006311 ORTHO05D007732 5.7e-56 221.5 172 72.7
SGA_v2.0_scaffold7G03983 Striga asiatica HOM05D006311 ORTHO05D007732 5.7e-56 221.5 159 76.7
Ca_19458_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 7.4e-56 221.1 161 76.4
Nn2g14263 Nelumbo nucifera HOM05D006311 ORTHO05D007732 7.4e-56 221.1 201 64.7
Duzib150G1639 Durio zibethinus HOM05D006311 ORTHO05D007732 9.7e-56 220.7 148 77.7
MBI17_g18935_MAGBIO Magnolia biondii HOM05D006311 ORTHO05D007732 9.7e-56 220.7 178 70.8
Manes.11G165200 Manihot esculenta HOM05D006311 ORTHO05D007732 9.7e-56 220.7 196 66.8
Sp4g10100 Schrenkiella parvula HOM05D006311 ORTHO05D007732 1.3e-55 220.3 199 63.8
Phvul.011G097600 Phaseolus vulgaris HOM05D006311 ORTHO05D007732 1.7e-55 219.9 156 72.4
A04p20870 Brassica napus HOM05D006311 ORTHO05D007732 2.2e-55 219.5 165 72.1
CARHR119830 Cardamine hirsuta HOM05D006311 ORTHO05D007732 2.2e-55 219.5 161 73.3
Carub.0004s0790 Capsella rubella HOM05D006311 ORTHO05D007732 2.8e-55 219.2 161 75.8
Eucgr.J00538 Eucalyptus grandis HOM05D006311 ORTHO05D007732 2.8e-55 219.2 161 75.2
MSTRG.18783 Avicennia marina HOM05D006311 ORTHO05D007732 4.8e-55 218.4 195 64.6
Thhalv10002100m.g Eutrema salsugineum HOM05D006311 ORTHO05D007732 8.2e-55 217.6 177 66.7
Ca_29924_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 1.1e-54 217.2 167 73.7
RcHm_v2.0_Chr5g0047271 Rosa chinensis HOM05D006311 ORTHO05D007732 1.8e-54 216.5 162 74.7
ECA238G1364 Erigeron canadensis HOM05D006311 ORTHO05D007732 4.1e-54 215.3 133 83.5
BraA04t17659Z Brassica rapa HOM05D001305 ORTHO05D007732 6.9e-54 214.5 161 72.7
Aqoxy4G02682 Aquilegia oxysepala HOM05D006311 ORTHO05D007732 9.1e-54 214.2 157 73.2
Aa31LG5G8700 Aethionema arabicum HOM05D006311 ORTHO05D007732 3.4e-53 212.2 181 67.4
Hund20941 Selenicereus undatus HOM05D006311 ORTHO05D007732 3.4e-53 212.2 203 60.6
PSO384G4643 Papaver somniferum HOM05D006311 ORTHO05D007732 8.5e-52 207.6 196 64.8
PSO339G0926 Papaver somniferum HOM05D006311 ORTHO05D007732 1.1e-51 207.2 196 64.8
EL10Ac7g16320 Beta vulgaris HOM05D006311 ORTHO05D007732 3.2e-51 205.7 157 71.3
Os04g0416000 Oryza sativa ssp. japonica HOM05D006311 ORTHO05D007732 2.3e-49 199.5 177 61.0
CBR_g30935 Chara braunii HOM05D006311 ORTHO05D007732 5.1e-49 198.4 148 71.6
ATR0772G022 Amborella trichopoda HOM05D006311 ORTHO05D007732 8.8e-49 197.6 196 60.7
HPP92_023073 Vanilla planifolia HOM05D006311 ORTHO05D007732 2.6e-48 196.1 146 71.9
SEGI_25108 Sequoiadendron giganteum HOM05D006311 ORTHO05D007732 5.7e-48 194.9 176 62.5
Mapoly0006s0182 Marchantia polymorpha HOM05D006311 ORTHO05D007732 2.8e-47 192.6 131 76.3
Prupe.6G139600 Prunus persica HOM05D006311 ORTHO05D007732 3.7e-47 192.2 164 66.5
SGA_v2.0_scaffold114G31957 Striga asiatica HOM05D006311 ORTHO05D007732 1.1e-46 190.7 117 83.8
Lj1A261G25 Lonicera japonica HOM05D006311 ORTHO05D007732 2.4e-46 189.5 117 84.6
Haze_23330 Corylus avellana HOM05D006311 ORTHO05D007732 7.0e-46 188.0 120 81.7
CDE02G3359 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 2.0e-45 186.4 119 78.2
SMO146G0331 Selaginella moellendorffii HOM05D006311 ORTHO05D007732 5.0e-44 181.8 130 73.1
Pp3c14_19090 Physcomitrium patens HOM05D006311 ORTHO05D007732 1.9e-43 179.9 141 65.2
AagrBONN_evm.TU.Sc2ySwM_117.22 Anthoceros agrestis HOM05D006311 ORTHO05D007732 5.7e-40 168.3 170 55.3
MD03G1152600 Malus domestica HOM05D006311 ORTHO05D007732 2.8e-39 166.0 109 78.9
MCO12G429 Micromonas commoda HOM05D006311 ORTHO05D007732 2.2e-36 156.4 130 60.0
PRCOL_00001321 Prasinoderma coloniale HOM05D006311 ORTHO05D007732 4.7e-34 148.7 134 60.4
BcaC02g08253 Brassica carinata HOM05D006311 ORTHO05D007732 3.0e-33 146.0 161 55.9
Cre12.g485850 Chlamydomonas reinhardtii HOM05D006311 ORTHO05D007732 3.0e-33 146.0 142 53.5
BcaC02g08251 Brassica carinata HOM05D006311 ORTHO05D007732 9.7e-32 141.0 123 64.2
Gohir.D07G115550 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.3e-31 140.6 87 83.9
Gohir.A07G112050 Gossypium hirsutum HOM05D006311 ORTHO05D007732 2.8e-31 139.4 87 83.9
Gorai.001G123800 Gossypium raimondii HOM05D006311 ORTHO05D007732 4.8e-31 138.7 87 82.8
Actinidia24237 Actinidia chinensis HOM05D006311 ORTHO05D007732 1.2e-26 124.0 133 55.6
BraA04t17657Z Brassica rapa HOM05D006311 ORTHO05D007732 1.6e-26 123.6 86 75.6
Oeu009055.1 Olea europaea HOM05D000182 ORTHO05D000112 3.6e-26 122.5 92 71.7
A04p20840 Brassica napus HOM05D006311 ORTHO05D007732 1.4e-22 110.5 78 74.4
Zm00001eb422070 Zea mays HOM05D006311 ORTHO05D007732 2.5e-19 99.8 99 57.6
CDE08G1250 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 8.0e-18 94.7 57 77.2
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 1.5e-08 63.9 105 37.1
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 3.2e-06 56.2 123 34.1
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 4.1e-06 55.8 122 32.8
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 5.4e-06 55.5 116 30.2
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 5.4e-06 55.5 128 30.5
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 7.0e-06 55.1 116 31.0


User provided reference genes

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