Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 7.9e-183 643.7 329 100.0
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 1.0e-174 616.7 319 98.4
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 3.3e-136 488.8 318 80.5
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 3.3e-136 488.8 318 80.2
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 1.2e-125 453.8 291 79.4
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 3.5e-106 389.0 323 63.5
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 3.6e-103 379.0 314 64.3
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 9.0e-102 374.4 303 65.0
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 3.4e-101 372.5 298 65.8
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 3.4e-101 372.5 298 65.8
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 9.3e-99 364.4 316 61.1
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.0e-97 360.9 321 59.8
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 1.3e-97 360.5 310 61.0
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 3.9e-97 359.0 307 63.2
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 8.7e-97 357.8 304 63.5
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 1.5e-96 357.1 303 60.7
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 1.5e-96 357.1 293 62.8
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 9.6e-96 354.4 311 62.1
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 9.6e-96 354.4 291 64.3
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 6.2e-95 351.7 288 63.5
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 6.2e-95 351.7 266 66.9
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 5.3e-94 348.6 301 61.8
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.2e-93 347.4 301 61.5
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 4.5e-93 345.5 286 63.3
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 2.2e-92 343.2 304 61.5
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 4.9e-92 342.0 312 59.0
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 4.9e-92 342.0 302 58.6
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 1.1e-91 340.9 319 57.1
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 1.1e-91 340.9 284 62.7
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 1.4e-91 340.5 280 64.3
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.4e-91 340.5 301 60.8
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 2.4e-91 339.7 300 58.3
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 3.2e-91 339.3 307 60.3
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 9.3e-91 337.8 293 60.1
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 3.5e-90 335.9 286 61.2
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 3.5e-90 335.9 320 59.1
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 5.1e-89 332.0 294 58.8
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 8.7e-89 331.3 293 60.4
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 7.4e-88 328.2 294 59.5
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 1.3e-87 327.4 286 60.8
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 1.6e-87 327.0 303 56.4
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 1.6e-87 327.0 292 57.5
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 2.1e-87 326.6 305 56.7
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 2.8e-87 326.2 295 56.6
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 4.8e-87 325.5 305 58.4
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 4.8e-87 325.5 311 57.9
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 4.8e-87 325.5 294 58.2
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 4.8e-87 325.5 344 54.1
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 1.8e-86 323.6 261 61.7
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 2.4e-86 323.2 308 57.5
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 4.0e-86 322.4 286 58.4
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 5.3e-86 322.0 301 57.8
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 6.9e-86 321.6 297 57.6
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 2.6e-85 319.7 289 61.2
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 3.4e-85 319.3 298 58.1
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 4.5e-85 318.9 301 57.8
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 4.5e-85 318.9 304 57.2
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 4.5e-85 318.9 292 57.2
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 1.7e-84 317.0 295 57.6
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 2.9e-84 316.2 304 56.2
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 4.9e-84 315.5 272 60.3
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 5.5e-83 312.0 266 60.9
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 5.5e-83 312.0 318 57.2
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 2.7e-82 309.7 290 58.6
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 3.5e-82 309.3 294 56.5
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 6.0e-82 308.5 266 62.4
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 6.0e-82 308.5 260 61.2
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 8.7e-81 304.7 270 57.8
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 1.5e-80 303.9 309 54.7
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 1.3e-79 300.8 281 58.4
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 6.3e-79 298.5 320 54.4
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 1.8e-78 297.0 286 57.7
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 3.1e-78 296.2 278 57.9
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 3.4e-77 292.7 297 55.9
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 5.5e-75 285.4 313 51.1
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 1.0e-73 281.2 315 47.3
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 1.4e-73 280.8 298 52.7
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 1.5e-72 277.3 265 60.0
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 2.8e-71 273.1 381 43.0
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 4.1e-70 269.2 261 55.6
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 5.3e-70 268.9 301 48.2
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 6.9e-70 268.5 297 48.1
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 2.6e-69 266.5 161 80.7
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 5.9e-69 265.4 321 48.3
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 4.2e-67 259.2 276 50.7
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 3.6e-66 256.1 264 54.5
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 7.9e-66 255.0 293 48.8
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 3.3e-64 249.6 280 50.4
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 3.3e-64 249.6 283 48.4
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 5.9e-61 238.8 279 49.8
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 1.7e-60 237.3 204 54.9
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 2.2e-60 236.9 275 49.1
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 3.0e-57 226.5 203 59.6
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 1.1e-56 224.6 157 72.6
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 4.4e-56 222.6 296 43.2
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.3e-55 221.1 152 74.3
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 1.9e-51 207.2 231 50.2
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 1.2e-50 204.5 269 42.8
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 4.7e-50 202.6 257 48.2
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 5.2e-49 199.1 277 44.4
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 2.2e-47 193.7 222 53.2
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 6.3e-47 192.2 194 53.6
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 1.4e-46 191.0 288 39.9
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 4.1e-46 189.5 129 72.1
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 2.0e-40 170.6 211 46.0
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 8.3e-39 165.2 276 37.7
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 5.4e-38 162.5 105 76.2
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 7.7e-37 158.7 147 57.1
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 1.4e-33 147.9 191 39.8
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 8.9e-33 145.2 105 70.5
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 1.7e-31 141.0 139 58.3
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 6.3e-31 139.0 143 51.7
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 2.7e-29 133.7 85 74.1
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 5.0e-28 129.4 99 69.7
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 1.1e-27 128.3 129 54.3
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 6.1e-26 122.5 186 42.5
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 2.3e-25 120.6 99 64.6
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 3.0e-20 103.6 150 41.3
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.6e-18 97.8 145 40.7
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 4.4e-16 89.7 72 66.7
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 3.7e-15 86.7 91 57.1
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 3.0e-12 77.0 82 56.1
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 5.6e-11 72.8 160 31.2
Hma1.2p1_0319F.1_g123930 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 4.0e-09 66.6 82 45.1
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 5.8e-08 62.8 56 58.9
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 2.2e-07 60.8 66 59.1
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 2.9e-07 60.5 86 41.9
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 1.1e-06 58.5 57 50.9
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 1.9e-06 57.8 60 58.3
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 2.4e-06 57.4 94 36.2


User provided reference genes

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