Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 2260.7 1162 100.0
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 2256.1 1162 99.8
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 2184.5 1162 96.3
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 2181.4 1162 96.2
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 2179.4 1161 95.8
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 2152.5 1210 92.4
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 2045.8 1165 89.5
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 2033.5 1165 88.6
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 2020.4 1166 88.8
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 2015.7 1166 88.5
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1996.1 1171 87.1
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1994.9 1168 87.6
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1991.5 1172 86.9
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1989.5 1167 87.1
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1988.4 1170 86.1
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1986.5 1168 86.7
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1970.7 1167 86.1
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1970.3 1168 86.1
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1969.9 1175 86.2
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1962.6 1168 85.4
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1960.3 1173 85.6
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1960.3 1164 85.6
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1958.7 1166 85.3
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1956.4 1165 87.3
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1952.9 1165 84.0
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1950.6 1172 85.6
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1949.9 1166 84.6
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1948.3 1165 84.1
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1945.2 1165 85.5
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1943.7 1165 84.5
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1943.3 1165 85.1
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1941.4 1167 84.7
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1941.4 1165 85.6
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1939.9 1165 85.2
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1938.7 1174 84.8
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1937.9 1166 84.5
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1936.8 1164 85.1
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1933.7 1166 83.0
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1932.9 1177 84.5
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1927.5 1171 84.4
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1927.1 1169 84.3
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1926.8 1165 83.7
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1925.6 1171 84.3
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1925.2 1167 84.6
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1924.4 1165 83.3
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1922.5 1165 83.6
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1922.1 1165 84.3
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1921.7 1204 82.7
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1921.0 1165 84.3
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1919.8 1091 88.3
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1917.9 1171 83.9
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1916.7 1203 82.0
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1914.4 1169 83.7
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1913.7 1165 84.0
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1911.3 1168 83.9
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1910.6 1174 83.0
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1909.0 1167 83.7
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1908.3 1173 83.2
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1904.8 1168 83.8
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1904.8 1165 84.0
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1904.8 1099 86.8
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1904.0 1175 82.5
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1900.6 1167 82.6
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1898.6 1170 82.9
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1895.2 1178 81.8
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1893.6 1175 82.3
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1892.9 1175 82.8
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1891.3 1170 82.4
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1883.6 1167 82.6
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1882.1 1171 82.6
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1881.7 1163 82.6
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1881.3 1197 81.9
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1875.9 1177 82.3
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1873.6 1180 81.9
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1873.6 1173 82.4
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1871.7 1179 81.8
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1870.1 1165 82.1
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1870.1 1173 81.8
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1869.7 1172 82.0
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1869.7 1172 82.0
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1869.4 1171 81.8
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1869.0 1155 83.5
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1864.4 1165 81.9
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1863.2 1191 80.8
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1862.8 1168 82.4
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1862.4 1167 80.3
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1837.4 1326 74.6
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1835.5 1175 80.9
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1832.8 1098 83.6
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1825.1 1175 79.9
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1793.9 1195 79.0
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1748.8 1168 74.8
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1728.4 1068 82.3
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1719.1 1164 75.4
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1689.1 1171 73.8
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1651.0 996 84.7
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1627.5 1170 70.9
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1624.4 1166 70.1
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1608.2 1148 74.7
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1557.3 941 83.6
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1478.4 838 89.3
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1472.6 1160 65.3
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1464.1 1161 63.8
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1409.8 1160 62.4
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1402.1 1161 62.0
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1401.0 838 83.9
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1390.6 1177 61.6
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1364.0 799 85.9
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1298.9 797 81.1
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1223.0 787 77.5
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1180.2 695 87.3
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1107.0 923 60.8
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 4.0e-306 1055.0 1190 46.6
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 3.7e-299 1031.9 576 91.7
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 2.7e-294 1015.8 653 79.3
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 6.7e-285 984.6 745 71.5
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.8e-277 959.9 601 83.4
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 4.5e-273 945.3 546 88.1
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 5.5e-271 938.3 591 80.7
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 4.2e-255 885.6 519 82.3
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 3.7e-251 872.5 625 71.8
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 5.6e-223 778.9 480 83.3
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 7.1e-218 761.9 465 80.0
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 6.4e-203 712.2 439 85.2
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 5.2e-152 543.1 357 79.3
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 5.0e-147 526.6 354 79.1
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 3.3e-114 417.5 380 57.1
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 5.6e-114 416.8 281 73.7
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 6.6e-91 340.1 195 87.2
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 7.9e-60 236.9 168 75.6
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 3.9e-51 208.0 145 75.2
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 4.5e-47 194.5 117 88.9
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 2.0e-39 169.1 87 94.3
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 4.2e-37 161.4 103 83.5
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 2.1e-36 159.1 109 78.9
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 8.8e-35 153.7 96 86.5
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 1.5e-34 152.9 78 89.7
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 5.2e-19 101.3 132 45.5
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 5.2e-19 101.3 132 45.5
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 7.5e-18 97.4 98 66.3
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 2.2e-17 95.9 84 63.1
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 4.1e-16 91.7 51 84.3
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 5.4e-16 91.3 51 84.3
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 7.0e-16 90.9 51 84.3
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 4.0e-11 75.1 332 27.4
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 3.5e-07 62.0 37 75.7


User provided reference genes

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