Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 5.4e-54 214.2 115 100.0
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 5.4e-54 214.2 115 100.0
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 3.3e-51 204.9 115 96.5
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 9.3e-46 186.8 118 87.3
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 7.9e-45 183.7 116 85.3
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.7e-44 182.6 118 87.3
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 5.6e-43 177.6 118 83.9
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 8.1e-42 173.7 118 81.4
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.7e-39 166.0 118 81.4
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 8.7e-36 153.7 117 75.2
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 4.3e-35 151.4 115 72.2
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 4.8e-34 147.9 116 71.6
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 1.1e-33 146.7 118 72.0
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.4e-33 146.4 115 71.3
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 3.1e-33 145.2 118 72.0
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 4.0e-33 144.8 120 69.2
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 1.5e-32 142.9 121 68.6
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 3.4e-32 141.7 119 68.9
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 5.8e-32 141.0 114 71.1
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 5.8e-32 141.0 115 68.7
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 1.7e-31 139.4 116 69.0
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.2e-31 139.0 116 69.0
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 2.9e-31 138.7 118 68.6
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 3.8e-31 138.3 116 68.1
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 4.9e-31 137.9 118 65.3
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 4.9e-31 137.9 116 67.2
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 1.1e-30 136.7 120 64.2
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 1.4e-30 136.3 117 68.4
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 1.4e-30 136.3 116 68.1
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.4e-30 136.3 121 66.1
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 1.9e-30 136.0 117 69.2
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 1.9e-30 136.0 120 63.3
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 9.3e-30 133.7 121 65.3
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 9.3e-30 133.7 121 65.3
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 1.2e-29 133.3 116 67.2
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 1.2e-29 133.3 120 62.5
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 2.7e-29 132.1 118 67.8
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 3.5e-29 131.7 117 65.0
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 6.0e-29 131.0 117 65.8
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 6.0e-29 131.0 115 62.6
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 7.9e-29 130.6 115 66.1
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.0e-28 130.2 118 66.1
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 1.0e-28 130.2 120 60.0
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.0e-28 130.2 120 60.0
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 1.3e-28 129.8 113 68.1
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.8e-28 129.4 120 60.0
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 1.8e-28 129.4 113 65.5
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 1.8e-28 129.4 116 65.5
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 2.3e-28 129.0 115 66.1
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 2.3e-28 129.0 115 62.6
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 2.3e-28 129.0 120 60.8
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 2.3e-28 129.0 115 60.9
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 3.0e-28 128.6 114 66.7
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 3.9e-28 128.3 112 62.5
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 5.1e-28 127.9 112 64.3
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 1.1e-27 126.7 118 64.4
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.5e-27 126.3 113 65.5
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 2.5e-27 125.6 120 65.0
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.3e-27 125.2 113 64.6
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 7.4e-27 124.0 117 64.1
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.3e-26 123.2 113 67.3
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 2.1e-26 122.5 117 63.2
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 2.1e-26 122.5 111 64.9
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 3.7e-26 121.7 117 64.1
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 4.8e-26 121.3 120 61.7
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 8.2e-26 120.6 117 61.5
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 8.2e-26 120.6 121 62.8
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 1.8e-25 119.4 116 61.2
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 1.8e-25 119.4 116 61.2
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 1.8e-25 119.4 116 61.2
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 1.8e-25 119.4 119 63.0
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 2.4e-25 119.0 121 63.6
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 3.1e-25 118.6 129 58.1
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 3.1e-25 118.6 120 65.0
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 4.1e-25 118.2 120 60.8
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 4.1e-25 118.2 122 59.8
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 6.9e-25 117.5 107 63.6
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 9.0e-25 117.1 115 59.1
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 9.0e-25 117.1 113 61.9
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 9.0e-25 117.1 123 56.1
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 9.0e-25 117.1 120 61.7
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 1.5e-24 116.3 117 58.1
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 1.5e-24 116.3 122 59.8
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 2.0e-24 115.9 119 61.3
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 2.0e-24 115.9 119 61.3
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 2.0e-24 115.9 119 61.3
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 2.0e-24 115.9 118 61.0
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 2.6e-24 115.5 113 62.8
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 2.6e-24 115.5 113 62.8
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 2.6e-24 115.5 112 59.8
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 3.4e-24 115.2 127 55.9
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 4.5e-24 114.8 153 51.6
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 5.9e-24 114.4 117 59.8
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 5.9e-24 114.4 118 59.3
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 5.9e-24 114.4 121 60.3
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 7.6e-24 114.0 119 59.7
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 7.6e-24 114.0 120 62.5
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 1.7e-23 112.8 120 58.3
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 1.7e-23 112.8 120 61.7
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.7e-23 112.8 116 61.2
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 2.2e-23 112.5 119 56.3
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 2.9e-23 112.1 115 60.9
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 3.8e-23 111.7 117 59.0
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 5.0e-23 111.3 121 60.3
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 5.0e-23 111.3 121 60.3
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 5.5e-22 107.8 111 56.8
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 7.2e-22 107.5 111 55.9
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 9.3e-22 107.1 102 64.7
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 1.2e-21 106.7 118 54.2
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 2.7e-21 105.5 121 57.9
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 1.0e-20 103.6 121 60.3
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 1.3e-20 103.2 119 57.1
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 3.3e-19 98.6 122 54.1
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 5.7e-19 97.8 120 50.8
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 5.7e-19 97.8 119 55.5
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 7.4e-19 97.4 106 57.5
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 9.7e-19 97.1 114 57.9
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.3e-18 96.7 115 52.2
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.1e-17 93.6 120 47.5
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 1.8e-17 92.8 120 47.5
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 2.4e-17 92.4 106 56.6
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 1.2e-16 90.1 68 76.5
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 2.0e-16 89.4 87 63.2
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 4.5e-16 88.2 106 54.7
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 1.3e-15 86.7 123 52.8
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 5.5e-14 81.3 81 56.8
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 5.5e-14 81.3 87 51.7
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.2e-13 80.1 83 53.0
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 1.2e-13 80.1 90 53.3
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 2.7e-13 79.0 108 44.4
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 6.1e-13 77.8 84 56.0
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 3.0e-12 75.5 79 54.4
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 3.9e-12 75.1 81 50.6
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.1e-12 74.7 79 54.4
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 6.7e-12 74.3 69 60.9
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 6.7e-12 74.3 69 60.9
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 1.1e-11 73.6 195 34.9
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.3e-11 72.0 79 53.2
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 7.4e-11 70.9 70 58.6
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.8e-10 68.9 47 76.6
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 1.1e-09 67.0 110 41.8
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 1.1e-09 67.0 71 56.3
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 2.4e-09 65.9 112 42.0
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 6.9e-09 64.3 101 43.6
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 4.5e-08 61.6 82 48.8
ECA238G3836 Erigeron canadensis HOM05D000407 ORTHO05D001717 5.9e-08 61.2 45 62.2
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 2.2e-07 59.3 36 86.1
Cpa.g.sc32.38 Carica papaya HOM05D004934 ORTHO05D005924 1.4e-06 56.6 34 88.2


User provided reference genes

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