Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 3.6e-32 141.0 71 100.0
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 4.0e-31 137.5 71 98.6
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 1.4e-28 129.0 72 93.1
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 1.9e-28 128.6 64 98.4
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 2.4e-28 128.3 72 93.1
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 6.0e-27 123.6 63 100.0
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.3e-26 121.7 66 89.4
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.3e-26 121.7 66 89.4
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 3.9e-26 120.9 67 86.6
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 5.0e-26 120.6 67 86.6
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 5.0e-26 120.6 71 84.5
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 6.6e-26 120.2 66 87.9
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 6.6e-26 120.2 66 87.9
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 7.3e-25 116.7 66 86.4
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 9.5e-25 116.3 64 87.5
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 2.1e-24 115.2 66 81.8
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 2.1e-24 115.2 64 85.9
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 2.1e-24 115.2 64 84.4
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 2.8e-24 114.8 64 85.9
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 2.8e-24 114.8 63 87.3
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 4.7e-24 114.0 71 80.3
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 8.0e-24 113.2 68 83.8
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 1.1e-23 112.8 70 75.7
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 1.4e-23 112.5 71 77.5
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 1.4e-23 112.5 67 80.6
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 1.8e-23 112.1 64 84.4
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 1.8e-23 112.1 72 77.8
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 2.3e-23 111.7 64 82.8
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 2.3e-23 111.7 64 82.8
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 2.3e-23 111.7 64 82.8
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 2.3e-23 111.7 64 82.8
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 2.3e-23 111.7 64 82.8
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 2.3e-23 111.7 64 82.8
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 2.3e-23 111.7 64 82.8
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 2.3e-23 111.7 64 82.8
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 2.3e-23 111.7 71 77.5
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 4.0e-23 110.9 62 83.9
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 5.2e-23 110.5 64 81.2
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 5.2e-23 110.5 71 77.5
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 5.2e-23 110.5 61 83.6
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 5.2e-23 110.5 67 79.1
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 6.8e-23 110.2 64 81.2
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 6.8e-23 110.2 64 81.2
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 6.8e-23 110.2 59 88.1
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 8.9e-23 109.8 64 81.2
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 8.9e-23 109.8 64 81.2
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 8.9e-23 109.8 68 80.9
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 8.9e-23 109.8 69 81.2
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 1.2e-22 109.4 70 75.7
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 1.2e-22 109.4 61 82.0
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 1.5e-22 109.0 71 76.1
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 1.5e-22 109.0 71 76.1
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 1.5e-22 109.0 68 80.9
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 2.6e-22 108.2 67 76.1
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 2.6e-22 108.2 64 79.7
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 3.4e-22 107.8 64 79.7
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 3.4e-22 107.8 69 78.3
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 3.4e-22 107.8 67 76.1
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 3.4e-22 107.8 67 76.1
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 3.4e-22 107.8 67 76.1
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 3.4e-22 107.8 67 76.1
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 3.4e-22 107.8 67 76.1
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 3.4e-22 107.8 68 79.4
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 3.4e-22 107.8 68 79.4
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 4.4e-22 107.5 69 73.9
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 4.4e-22 107.5 63 82.5
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 5.8e-22 107.1 64 79.7
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 5.8e-22 107.1 58 81.0
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 5.8e-22 107.1 64 79.7
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 5.8e-22 107.1 67 74.6
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 7.5e-22 106.7 64 79.7
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 9.8e-22 106.3 68 77.9
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 1.3e-21 105.9 64 78.1
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.3e-21 105.9 58 79.3
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.3e-21 105.9 58 79.3
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.3e-21 105.9 58 79.3
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.3e-21 105.9 58 79.3
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.3e-21 105.9 58 79.3
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 1.3e-21 105.9 58 79.3
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 1.3e-21 105.9 72 76.4
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 1.7e-21 105.5 68 76.5
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 2.2e-21 105.1 73 74.0
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 2.2e-21 105.1 64 78.1
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 2.9e-21 104.8 65 75.4
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 2.9e-21 104.8 64 76.6
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 2.9e-21 104.8 64 76.6
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.9e-21 104.8 69 72.5
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 2.9e-21 104.8 58 79.3
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 2.9e-21 104.8 68 76.5
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 3.7e-21 104.4 64 78.1
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 3.7e-21 104.4 65 78.5
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 6.4e-21 103.6 71 71.8
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 6.4e-21 103.6 75 69.3
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 6.4e-21 103.6 75 69.3
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 1.1e-20 102.8 72 75.0
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 1.1e-20 102.8 72 75.0
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 2.4e-20 101.7 58 77.6
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 2.4e-20 101.7 64 73.4
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 2.4e-20 101.7 67 70.1
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 5.4e-20 100.5 56 83.9
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 5.4e-20 100.5 64 78.1
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 7.0e-20 100.1 66 71.2
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 1.2e-19 99.4 64 73.4
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 2.7e-19 98.2 50 90.0
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 6.0e-19 97.1 65 72.3
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 1.1e-17 92.8 58 72.4
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 3.3e-17 91.3 62 72.6
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 1.6e-16 89.0 64 64.1
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 3.6e-16 87.8 56 75.0
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 1.1e-15 86.3 50 78.0
unitig_0.g1624 Utricularia gibba HOM05D007124 ORTHO05D008980 1.8e-07 58.9 47 59.6
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 3.1e-07 58.2 58 43.1
MD11G1211600 Malus domestica HOM05D007124 ORTHO05D008980 9.9e-06 53.1 37 62.2


User provided reference genes

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