Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 1.2e-39 166.0 84 100.0
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 8.0e-39 163.3 84 98.8
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 6.6e-33 143.7 84 84.5
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 9.5e-32 139.8 84 79.8
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 4.3e-16 87.8 85 62.4
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-12 76.3 80 55.0
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 6.4e-12 73.9 80 53.8
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 1.4e-11 72.8 80 53.8
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 3.2e-11 71.6 79 50.6
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 4.1e-11 71.2 80 47.5
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 7.1e-11 70.5 80 52.5
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.7e-10 68.6 80 46.2
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 2.7e-10 68.6 75 56.0
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 4.6e-10 67.8 90 50.0
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 7.8e-10 67.0 81 48.1
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 3.0e-09 65.1 86 45.3
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 3.9e-09 64.7 86 45.3
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.1e-08 63.2 80 47.5
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 1.1e-08 63.2 80 47.5
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 1.1e-08 63.2 81 48.1
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.5e-08 62.8 86 48.8
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.9e-08 62.4 47 61.7
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 3.3e-08 61.6 87 48.3
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 5.6e-08 60.8 44 63.6
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 7.3e-08 60.5 80 46.2
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 9.6e-08 60.1 80 46.2
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.2e-07 59.7 80 45.0
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 1.6e-07 59.3 52 57.7
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 1.6e-07 59.3 80 46.2
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.1e-07 58.9 80 46.2
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.1e-07 58.9 80 46.2
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 2.1e-07 58.9 77 44.2
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.8e-07 58.5 80 40.0
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 3.6e-07 58.2 49 59.2
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 4.7e-07 57.8 80 43.8
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 6.2e-07 57.4 81 45.7
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 6.2e-07 57.4 64 43.8
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 6.2e-07 57.4 64 43.8
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 6.2e-07 57.4 64 50.0
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.2e-07 57.4 80 45.0
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 6.2e-07 57.4 80 42.5
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 8.1e-07 57.0 83 38.6
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.1e-06 56.6 50 50.0
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 1.1e-06 56.6 80 41.2
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 1.1e-06 56.6 80 45.0
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.1e-06 56.6 87 47.1
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 1.4e-06 56.2 79 45.6
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 1.4e-06 56.2 79 50.6
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.4e-06 56.2 71 47.9
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 1.4e-06 56.2 84 48.8
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.4e-06 56.2 81 44.4
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.8e-06 55.8 80 42.5
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.8e-06 55.8 80 45.0
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 2.4e-06 55.5 75 48.0
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 2.4e-06 55.5 79 43.0
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 2.4e-06 55.5 79 44.3
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 3.1e-06 55.1 84 39.3
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.1e-06 55.1 80 41.2
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.1e-06 55.1 80 42.5
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 3.1e-06 55.1 61 44.3
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 3.1e-06 55.1 80 41.2
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.1e-06 55.1 80 40.0
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.1e-06 55.1 65 50.8
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 3.1e-06 55.1 62 45.2
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 4.0e-06 54.7 47 55.3
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 4.0e-06 54.7 47 59.6
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 5.2e-06 54.3 63 49.2
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 5.2e-06 54.3 50 60.0
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 6.9e-06 53.9 69 46.4
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 6.9e-06 53.9 47 55.3
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 6.9e-06 53.9 36 72.2
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 9.0e-06 53.5 63 44.4
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 9.0e-06 53.5 43 62.8
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 9.0e-06 53.5 43 62.8
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 9.0e-06 53.5 43 62.8
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 9.0e-06 53.5 43 62.8
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 9.0e-06 53.5 76 44.7
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 9.0e-06 53.5 54 53.7


User provided reference genes

Program Settings