Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g026580 Solanum pennellii HOM05D007000 ORTHO05D009020 0.0e+00 1569.3 847 100.0
Solyc11g066870.3 Solanum lycopersicum HOM05D007000 ORTHO05D009020 0.0e+00 1546.9 847 98.3
PGSC0003DMG400026534 Solanum tuberosum HOM05D007000 ORTHO05D009020 0.0e+00 1497.6 847 93.9
CAN.G644.32 Capsicum annuum HOM05D007000 ORTHO05D009020 0.0e+00 1355.1 772 86.0
Nitab4.5_0001453g0060 Nicotiana tabacum HOM05D007000 ORTHO05D009020 0.0e+00 1306.6 781 85.9
Nitab4.5_0007303g0050 Nicotiana tabacum HOM05D007000 ORTHO05D009020 0.0e+00 1280.4 820 81.2
Oeu050179.1 Olea europaea HOM05D007000 ORTHO05D009020 6.3e-309 1063.9 769 72.3
Dinv12525 Davidia involucrata HOM05D007000 ORTHO05D009020 1.7e-306 1055.8 766 71.3
Cc01_g09830 Coffea canephora HOM05D007000 ORTHO05D009020 4.2e-305 1051.2 781 69.5
MSTRG.18732 Avicennia marina HOM05D007000 ORTHO05D009020 3.5e-299 1031.6 767 68.7
Migut.D02336 Erythranthe guttata HOM05D007000 ORTHO05D009020 1.2e-296 1023.1 770 67.8
QL01p013748 Quercus lobata HOM05D007000 ORTHO05D009020 1.7e-293 1012.7 758 69.0
CSS0049563 Camellia sinensis var. sinensis HOM05D007000 ORTHO05D009020 7.8e-291 1003.8 598 80.1
GSVIVG01031401001 Vitis vinifera HOM05D007000 ORTHO05D009020 5.0e-290 1001.1 802 65.3
Eucgr.J00424 Eucalyptus grandis HOM05D007000 ORTHO05D009020 1.6e-288 996.1 738 68.3
Potri.009G149100 Populus trichocarpa HOM05D007000 ORTHO05D009020 4.9e-285 984.6 763 66.4
Nn6g35052 Nelumbo nucifera HOM05D007000 ORTHO05D009020 3.5e-283 978.4 782 65.3
MD03G1134600 Malus domestica HOM05D007000 ORTHO05D009020 1.3e-282 976.5 797 64.7
Prupe.6G118900 Prunus persica HOM05D007000 ORTHO05D009020 1.5e-281 973.0 783 65.0
Sabra09G0117700 Salix brachista HOM05D007000 ORTHO05D009020 1.1e-279 966.8 768 65.0
Gohir.A07G107200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 5.2e-279 964.5 738 68.3
Gorai.001G119400 Gossypium raimondii HOM05D007000 ORTHO05D009020 7.5e-278 960.7 796 64.4
PGR119G0747 Punica granatum HOM05D007000 ORTHO05D009020 9.9e-278 960.3 739 67.4
RcHm_v2.0_Chr5g0055251 Rosa chinensis HOM05D007000 ORTHO05D009020 6.4e-277 957.6 761 65.4
TWI75G0014 Tripterygium wilfordii HOM05D007000 ORTHO05D009020 8.3e-277 957.2 762 66.0
TAR623G0382 Trochodendron aralioides HOM05D007000 ORTHO05D009020 3.5e-275 951.8 734 64.9
Gohir.A07G107100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 6.0e-275 951.0 798 64.2
FAN21G0141 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.3e-274 949.9 772 64.1
FvH4_3g29910 Fragaria vesca HOM05D007000 ORTHO05D009020 1.7e-274 949.5 771 63.4
FAN11G3012 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.7e-274 949.5 771 63.4
Gorai.001G119500 Gossypium raimondii HOM05D007000 ORTHO05D009020 5.1e-274 948.0 746 66.6
Gohir.D07G111200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.5e-273 946.4 746 66.4
CiPaw.14G103700 Carya illinoinensis HOM05D007000 ORTHO05D009020 1.2e-272 943.3 784 63.0
ClCG02G021900 Citrullus lanatus HOM05D007000 ORTHO05D009020 1.4e-271 939.9 749 65.7
Sc12g0004140 Simmondsia chinensis HOM05D007000 ORTHO05D009020 4.4e-270 934.9 669 69.5
Duzib150G0107 Durio zibethinus HOM05D007000 ORTHO05D009020 1.3e-269 933.3 724 68.1
FAN16G1383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 2.2e-269 932.6 787 62.0
Sed0022610 Sechium edule HOM05D007000 ORTHO05D009020 4.9e-269 931.4 742 64.6
Peaxi162Scf00789g00534 Petunia axillaris HOM05D007000 ORTHO05D009020 6.0e-267 924.5 560 84.3
CANSAT54G2429 Cannabis sativa HOM05D007000 ORTHO05D009020 1.2e-264 916.8 792 61.6
Sp6g22700 Schrenkiella parvula HOM05D007000 ORTHO05D009020 8.1e-264 914.1 677 68.5
AL6G33670 Arabidopsis lyrata HOM05D007000 ORTHO05D009020 1.1e-263 913.7 734 64.7
Manes.04G009000 Manihot esculenta HOM05D007000 ORTHO05D009020 2.4e-263 912.5 744 65.6
COL.COLO4_19295 Corchorus olitorius HOM05D007000 ORTHO05D009020 3.4e-262 908.7 682 68.3
Thhalv10012645m.g Eutrema salsugineum HOM05D007000 ORTHO05D009020 3.4e-262 908.7 739 64.1
BraA10t43904Z Brassica rapa HOM05D007000 ORTHO05D009020 1.4e-260 903.3 785 61.8
DCAR_012163 Daucus carota HOM05D007000 ORTHO05D009020 2.4e-260 902.5 775 61.2
BolC9t58265H Brassica oleracea HOM05D007000 ORTHO05D009020 2.1e-259 899.4 797 60.7
A10p18280 Brassica napus HOM05D007000 ORTHO05D009020 3.5e-259 898.7 794 61.0
AUR62038302 Chenopodium quinoa HOM05D007000 ORTHO05D009020 3.5e-259 898.7 789 59.8
AT5G22640 Arabidopsis thaliana HOM05D007000 ORTHO05D009020 4.6e-259 898.3 738 63.4
Carub.0006s2036 Capsella rubella HOM05D007000 ORTHO05D009020 4.6e-259 898.3 723 64.5
AUR62023939 Chenopodium quinoa HOM05D007000 ORTHO05D009020 2.3e-258 896.0 610 71.5
CARHR190940 Cardamine hirsuta HOM05D007000 ORTHO05D009020 9.6e-257 890.6 780 60.6
Ciclev10027793m.g Citrus clementina HOM05D007000 ORTHO05D009020 1.6e-256 889.8 796 59.4
unitig_747.g21960 Utricularia gibba HOM05D007000 ORTHO05D009020 1.6e-256 889.8 774 61.1
C09p53930 Brassica napus HOM05D007000 ORTHO05D009020 2.8e-256 889.0 692 65.9
Lj3g0010220 Lotus japonicus HOM05D007000 ORTHO05D009020 8.1e-256 887.5 727 63.3
BcaB08g36412 Brassica carinata HOM05D007000 ORTHO05D009020 2.4e-255 885.9 756 61.9
EL10Ac9g21077 Beta vulgaris HOM05D007000 ORTHO05D009020 9.0e-255 884.0 713 65.6
Lalb_Chr24g0395131 Lupinus albus HOM05D007000 ORTHO05D009020 4.5e-254 881.7 782 58.7
PSO339G5428 Papaver somniferum HOM05D007000 ORTHO05D009020 4.5e-254 881.7 795 59.4
Aa31LG1G12980 Aethionema arabicum HOM05D007000 ORTHO05D009020 3.8e-253 878.6 764 61.9
MELO3C021453.2 Cucumis melo HOM05D007000 ORTHO05D009020 5.4e-252 874.8 757 60.2
Aqoxy1G00944 Aquilegia oxysepala HOM05D007000 ORTHO05D009020 1.6e-251 873.2 759 59.8
SGA_v2.0_scaffold193G40708 Striga asiatica HOM05D007000 ORTHO05D009020 2.3e-250 869.4 775 60.6
PSO063G0097 Papaver somniferum HOM05D007000 ORTHO05D009020 5.1e-250 868.2 798 60.0
Lj1A221T47 Lonicera japonica HOM05D007000 ORTHO05D009020 6.7e-250 867.8 770 61.3
ECA238G2375 Erigeron canadensis HOM05D007000 ORTHO05D009020 1.9e-249 866.3 763 62.8
Glyma.13G319300 Glycine max HOM05D007000 ORTHO05D009020 7.4e-249 864.4 732 62.3
CsaV3_6G014720 Cucumis sativus L. HOM05D007000 ORTHO05D009020 6.2e-248 861.3 764 61.5
Glyma.12G181600 Glycine max HOM05D007000 ORTHO05D009020 3.1e-247 859.0 738 61.0
Phvul.005G127300 Phaseolus vulgaris HOM05D007000 ORTHO05D009020 1.3e-245 853.6 753 59.9
HanXRQChr14g0451961 Helianthus annuus HOM05D007000 ORTHO05D009020 8.4e-245 850.9 801 58.2
CDE02G4201 Ceratophyllum demersum HOM05D007000 ORTHO05D009020 1.1e-244 850.5 783 58.2
VMungo1080G1560 Vigna mungo HOM05D007000 ORTHO05D009020 2.5e-241 839.3 745 59.6
ATR0820G103 Amborella trichopoda HOM05D007000 ORTHO05D009020 2.4e-239 832.8 726 59.5
Medtr2g084835 Medicago truncatula HOM05D007000 ORTHO05D009020 9.0e-239 830.9 779 55.3
Lsat_1_v5_gn_2_96400 Lactuca sativa HOM05D007000 ORTHO05D009020 2.6e-238 829.3 694 63.8
FAN16G0383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.9e-236 823.2 851 54.6
Hund00783 Selenicereus undatus HOM05D007000 ORTHO05D009020 4.2e-236 822.0 771 59.7
Ah.01g004600 Amaranthus hybridus HOM05D007000 ORTHO05D009020 3.9e-234 815.5 790 57.3
arahy.Tifrunner.gnm1.ann1.0Z9K9L Arachis hypogaea HOM05D007000 ORTHO05D009020 7.4e-225 784.6 854 51.4
arahy.Tifrunner.gnm1.ann1.K5NCJW Arachis hypogaea HOM05D007000 ORTHO05D009020 1.7e-224 783.5 852 51.3
Ca_01679_v3 Cicer arietinum L. HOM05D007000 ORTHO05D009020 3.4e-222 775.8 729 56.0
TPR.G32364 Trifolium pratense HOM05D007000 ORTHO05D009020 3.4e-222 775.8 816 52.6
Psat5g254800 Pisum sativum HOM05D007000 ORTHO05D009020 6.1e-211 738.4 718 55.6
Thecc.09G291900 Theobroma cacao HOM05D007000 ORTHO05D009020 5.3e-207 725.3 546 70.3
Actinidia37100 Actinidia chinensis HOM05D007000 ORTHO05D009020 9.2e-167 591.7 794 46.0
HPP92_011511 Vanilla planifolia HOM05D007000 ORTHO05D009020 3.9e-157 559.7 335 74.9
Gohir.D07G111100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.2e-155 554.7 583 55.7
Mapoly0021s0145 Marchantia polymorpha HOM05D007000 ORTHO05D009020 1.5e-153 547.7 590 47.3
Pp3c14_2260 Physcomitrium patens HOM05D007000 ORTHO05D009020 9.9e-153 545.0 463 57.2
Haze_23451 Corylus avellana HOM05D007000 ORTHO05D009020 9.2e-151 538.5 388 66.2
Atru.chr3.3385 Acer truncatum HOM05D007000 ORTHO05D009020 1.1e-148 531.6 472 58.7
ScUNg0001440 Simmondsia chinensis HOM05D007000 ORTHO05D009020 3.3e-140 503.4 402 65.4
SEGI_23936 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 5.3e-138 496.1 585 47.4
HPP92_011563 Vanilla planifolia HOM05D007000 ORTHO05D009020 2.2e-128 464.2 265 78.1
Oeu050178.1 Olea europaea HOM05D007000 ORTHO05D009020 1.6e-115 421.4 408 62.0
HPP92_011520 Vanilla planifolia HOM05D007000 ORTHO05D009020 4.5e-113 413.3 409 53.1
AagrBONN_evm.TU.Sc2ySwM_344.1665 Anthoceros agrestis HOM05D007000 ORTHO05D009020 4.3e-108 396.7 471 45.4
Peaxi162Scf00789g00535 Petunia axillaris HOM05D007000 ORTHO05D009020 1.1e-106 392.1 195 92.3
MD11G1157100 Malus domestica HOM05D007000 ORTHO05D009020 2.4e-90 337.8 456 50.0
Atru.chr3.3384 Acer truncatum HOM05D007000 ORTHO05D009020 3.8e-88 330.5 188 77.7
Cpa.g.sc47.64 Carica papaya HOM05D007000 ORTHO05D009020 1.8e-82 311.6 341 49.3
BcaC04g19594 Brassica carinata HOM05D007000 ORTHO05D009020 2.2e-67 261.5 185 64.9
Cpa.g.sc47.63 Carica papaya HOM05D007000 ORTHO05D009020 4.1e-58 230.7 260 58.1
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.0e-32 146.4 117 62.4
CBR_g22485 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-31 141.4 352 30.7
Actinidia35447 Actinidia chinensis HOM05D007000 ORTHO05D009020 1.3e-30 139.4 83 75.9
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.9e-19 101.7 77 63.6
Actinidia27040 Actinidia chinensis HOM05D007000 ORTHO05D030830 1.4e-18 99.4 281 36.3
HPP92_011562 Vanilla planifolia HOM05D007000 ORTHO05D009020 2.4e-18 98.6 114 43.0
SEGI_03022 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 4.6e-17 94.4 72 54.2
Potri.004G188432 Populus trichocarpa HOM05D007000 ORTHO05D030830 1.2e-09 69.7 172 33.7
Oeu040143.1 Olea europaea HOM05D007000 ORTHO05D288686 8.2e-06 57.0 50 52.0


User provided reference genes

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