Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 1.3e-149 533.1 273 100.0
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 2.6e-147 525.4 273 98.2
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 5.1e-143 511.1 273 94.9
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 3.8e-122 441.8 270 84.1
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 6.3e-117 424.5 273 82.1
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.5e-102 376.7 271 70.1
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 4.4e-102 375.2 270 70.0
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 3.5e-99 365.5 270 67.8
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 8.5e-98 360.9 268 67.9
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 3.2e-97 359.0 270 68.5
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 7.2e-97 357.8 276 66.7
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 3.6e-96 355.5 273 67.4
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 3.0e-95 352.4 228 79.8
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 6.7e-95 351.3 251 70.5
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 1.2e-94 350.5 269 67.7
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.5e-94 350.1 259 69.1
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 2.6e-94 349.4 269 64.7
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 3.3e-94 349.0 270 66.3
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 5.7e-94 348.2 270 67.4
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 7.5e-94 347.8 271 66.8
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.3e-93 347.1 270 64.4
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.2e-93 346.3 250 70.8
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 6.3e-93 344.7 253 67.6
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 1.8e-92 343.2 254 67.3
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 9.1e-92 340.9 270 65.2
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 1.2e-91 340.5 229 75.1
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 1.6e-91 340.1 250 68.4
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 1.0e-90 337.4 278 63.7
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 6.5e-90 334.7 270 63.0
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 2.5e-89 332.8 258 67.1
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 5.5e-89 331.6 275 64.0
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 3.6e-88 328.9 273 61.5
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 1.4e-87 327.0 272 65.8
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 5.2e-87 325.1 237 68.4
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 5.2e-87 325.1 231 72.3
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 4.4e-86 322.0 227 70.5
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 1.7e-85 320.1 270 62.2
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 2.2e-85 319.7 235 67.7
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 3.7e-85 318.9 231 68.8
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 3.7e-85 318.9 229 70.7
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 8.3e-85 317.8 231 66.7
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 1.1e-84 317.4 229 69.9
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.4e-84 317.0 244 65.2
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 1.4e-84 317.0 227 70.5
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 5.4e-84 315.1 245 63.7
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 9.1e-84 314.3 236 66.5
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 1.2e-83 313.9 273 59.3
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.5e-83 312.4 273 59.0
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 7.7e-83 311.2 241 64.7
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 9.5e-81 304.3 246 62.6
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 1.2e-80 303.9 232 66.8
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 1.2e-80 303.9 232 66.4
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 1.6e-80 303.5 254 58.7
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 2.1e-80 303.1 238 63.0
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 2.8e-80 302.8 271 56.8
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 8.0e-80 301.2 227 67.4
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 1.8e-79 300.1 236 63.6
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.3e-79 299.7 274 59.9
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 2.0e-78 296.6 271 56.8
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 7.5e-78 294.7 237 62.9
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 7.5e-78 294.7 251 59.4
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.7e-77 293.5 273 56.0
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 2.8e-77 292.7 271 57.2
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 2.8e-77 292.7 271 57.2
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 2.8e-77 292.7 271 55.0
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 2.8e-77 292.7 269 56.5
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 3.7e-77 292.4 271 55.7
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 3.7e-77 292.4 247 59.1
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 4.9e-77 292.0 271 55.0
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 8.3e-77 291.2 267 58.8
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 3.2e-76 289.3 239 59.0
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.4e-76 288.5 239 61.9
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 7.0e-76 288.1 273 55.7
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 1.2e-75 287.3 264 56.4
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 1.6e-75 287.0 271 53.9
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 1.6e-75 287.0 264 56.1
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.5e-75 285.8 231 61.9
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.5e-75 285.4 231 62.3
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 1.0e-74 284.3 271 53.5
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 1.7e-74 283.5 232 62.5
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 1.7e-74 283.5 230 60.0
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.3e-74 283.1 270 56.7
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 3.9e-74 282.3 289 52.9
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 6.6e-74 281.6 205 69.3
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 3.1e-71 272.7 185 72.4
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 2.0e-70 270.0 197 70.1
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 2.2e-69 266.5 270 54.1
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 3.7e-69 265.8 197 68.0
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 6.4e-69 265.0 202 66.3
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 6.0e-67 258.5 245 55.5
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 1.7e-66 256.9 229 58.1
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 5.6e-65 251.9 252 52.4
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 8.0e-64 248.1 274 51.1
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 1.1e-63 247.7 221 57.9
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 1.4e-63 247.3 242 54.1
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-63 246.9 186 66.1
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.6e-62 243.0 181 66.3
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 2.4e-60 236.5 195 61.0
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 5.4e-60 235.3 219 58.0
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 9.5e-57 224.6 242 52.5
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 1.9e-52 210.3 160 69.4
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.3e-50 203.4 232 49.6
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 3.3e-49 199.5 123 77.2
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.4e-47 193.4 237 51.1
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 3.4e-46 189.5 121 73.6
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 8.1e-40 168.3 138 63.0
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.9e-38 161.4 173 52.6
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 2.9e-37 159.8 216 39.8
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.6e-33 144.8 140 57.9
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.1e-32 143.7 125 60.8
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 3.1e-31 139.8 153 51.0
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.9e-29 133.3 233 39.9
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.4e-28 131.0 116 59.5
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.0e-27 125.6 103 60.2
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 9.6e-25 118.2 110 57.3
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.3e-21 107.8 74 70.3
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 3.8e-21 106.3 87 58.6
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.5e-21 105.5 124 47.6
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.2e-20 103.2 71 71.8
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.0e-18 96.7 123 46.3
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.7e-17 92.4 99 52.5
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 1.3e-16 91.3 82 52.4
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.7e-16 89.7 87 51.7
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 8.2e-16 88.6 98 51.0
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 2.6e-14 83.6 91 50.5
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 3.4e-14 83.2 75 58.7
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.3e-13 81.3 66 56.1
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 3.3e-09 66.6 178 29.8
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 5.7e-09 65.9 49 57.1
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 5.7e-09 65.9 49 57.1
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.7e-09 65.1 85 44.7
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-08 64.7 134 33.6
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.6e-08 64.3 66 43.9
SalBow1G4086 Salvia bowleyana HOM05D005360 ORTHO05D006501 1.4e-07 61.2 104 37.5
ECA240G4443 Erigeron canadensis HOM05D000331 ORTHO05D006501 4.1e-07 59.7 56 57.1
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-06 58.2 48 58.3
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 2.0e-06 57.4 39 71.8
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 2.0e-06 57.4 53 47.2
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 2.0e-06 57.4 53 47.2
Cfa022886 Carpinus fangiana HOM05D005360 ORTHO05D006501 7.7e-06 55.5 213 28.6
FvH4_1g23850 Fragaria vesca HOM05D005360 ORTHO05D006501 7.7e-06 55.5 41 65.9


User provided reference genes

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