Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 0.0e+00 1260.0 676 100.0
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 0.0e+00 1236.1 676 96.9
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 0.0e+00 1110.9 674 87.8
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 0.0e+00 1099.3 660 88.5
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.3e-269 932.2 564 88.7
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 5.1e-261 904.4 515 91.7
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 1.9e-255 885.9 679 72.3
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 2.6e-249 865.5 679 69.1
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.5e-244 849.7 679 68.3
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 2.0e-244 849.4 664 70.2
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 3.1e-242 842.0 679 67.2
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 4.1e-242 841.6 683 67.1
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 5.3e-242 841.3 667 67.9
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 2.1e-238 829.3 677 67.4
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 6.1e-230 801.2 671 65.3
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 5.7e-228 794.7 668 62.4
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 2.8e-227 792.3 679 63.6
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 8.3e-227 790.8 661 63.8
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 1.8e-226 789.6 679 64.5
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 4.5e-225 785.0 658 63.4
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 5.0e-224 781.6 677 64.5
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 1.1e-223 780.4 656 63.1
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 3.2e-223 778.9 670 63.7
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.6e-222 776.5 675 60.7
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 2.7e-222 775.8 723 61.0
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 4.4e-220 768.5 673 62.0
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 1.3e-219 766.9 694 61.0
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 2.2e-219 766.1 673 61.8
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.8e-218 763.1 673 62.6
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 9.1e-218 760.8 673 61.5
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 1.2e-217 760.4 667 62.1
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 4.2e-215 751.9 678 60.3
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 9.5e-215 750.7 629 63.4
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 1.6e-214 750.0 676 59.6
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.6e-214 750.0 659 62.8
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 2.8e-214 749.2 684 61.3
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 8.0e-214 747.7 657 61.3
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 1.4e-213 746.9 693 59.0
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 2.3e-213 746.1 676 59.5
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 6.8e-213 744.6 662 59.4
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 6.8e-213 744.6 662 59.5
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 8.9e-213 744.2 651 62.1
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.2e-212 743.8 672 58.9
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 2.0e-212 743.0 659 60.8
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 3.4e-212 742.3 662 59.5
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.4e-212 741.9 678 60.0
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 9.8e-212 740.7 671 61.1
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.3e-211 740.3 691 59.3
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 1.3e-211 740.3 656 61.0
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 1.7e-211 740.0 665 59.5
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 6.3e-211 738.0 657 59.7
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 3.2e-210 735.7 662 58.8
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 3.2e-210 735.7 702 58.1
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.7e-209 732.6 642 61.2
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 2.9e-208 729.2 662 59.5
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 3.9e-208 728.8 662 61.0
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 5.0e-208 728.4 662 59.1
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 6.6e-208 728.0 658 59.1
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 6.6e-208 728.0 670 58.4
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 2.5e-207 726.1 675 59.4
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 3.3e-207 725.7 662 58.9
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 3.3e-207 725.7 662 59.4
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 5.6e-207 724.9 671 59.0
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 9.5e-207 724.2 653 59.7
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 8.0e-206 721.1 684 59.8
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 8.0e-206 721.1 671 58.7
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 8.0e-206 721.1 662 58.6
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 1.3e-203 713.8 676 58.0
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.9e-203 712.6 670 59.0
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 1.4e-202 710.3 692 56.2
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.1e-202 708.8 670 58.1
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 7.0e-202 708.0 674 56.8
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 1.2e-201 707.2 667 57.1
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 3.9e-200 702.2 663 57.0
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 1.5e-199 700.3 663 56.7
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 1.2e-198 697.2 665 56.5
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.1e-197 694.1 659 56.9
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.1e-197 694.1 656 57.3
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 3.1e-197 692.6 582 61.9
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 5.2e-197 691.8 640 59.2
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 9.8e-196 687.6 659 56.3
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 2.9e-195 686.0 656 56.2
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 2.9e-195 686.0 586 65.5
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 4.9e-195 685.3 660 55.6
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 1.1e-194 684.1 659 56.0
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 2.4e-194 682.9 658 56.1
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 1.2e-193 680.6 659 55.7
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 6.0e-193 678.3 659 56.0
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 6.0e-193 678.3 659 56.0
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 7.8e-193 677.9 659 56.0
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 1.0e-192 677.6 659 55.7
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.5e-191 673.7 672 56.7
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 5.2e-189 665.2 650 55.7
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 8.9e-189 664.5 586 62.3
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 4.4e-188 662.1 650 55.5
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.3e-187 660.6 535 65.4
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 6.4e-187 658.3 660 54.1
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.9e-186 656.8 669 55.0
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.3e-184 649.8 676 51.9
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 8.6e-184 647.9 673 54.4
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 8.6e-184 647.9 536 62.9
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 1.8e-181 640.2 680 55.6
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 6.4e-171 605.1 616 58.9
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 6.9e-165 585.1 537 57.9
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 6.4e-163 578.6 528 57.8
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 7.9e-161 571.6 671 49.0
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.5e-159 566.6 668 47.2
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 7.4e-159 565.1 681 46.4
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 1.7e-155 553.9 668 46.9
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 4.8e-150 535.8 676 45.3
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.4e-141 507.7 670 44.6
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 3.3e-135 486.5 634 43.8
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.7e-134 484.2 399 63.7
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 1.7e-131 474.2 669 43.9
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 1.1e-130 471.5 401 66.1
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 9.4e-130 468.4 667 42.3
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 2.6e-127 460.3 667 41.2
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 1.1e-125 454.9 676 40.5
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 6.5e-123 445.7 430 57.4
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 2.7e-113 413.7 398 57.0
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.1e-82 312.0 248 66.5
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 7.3e-82 309.3 252 65.1
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 8.9e-80 302.4 367 48.8
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 1.5e-66 258.5 429 40.1
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.4e-64 251.1 229 60.7
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 7.8e-60 236.1 451 35.7
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 7.3e-58 229.6 221 54.8
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 6.9e-56 223.0 202 58.9
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 8.4e-54 216.1 379 40.4
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 1.4e-53 215.3 366 40.7
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 4.0e-48 197.2 252 46.4
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 1.0e-43 182.6 203 51.7
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.6e-41 175.3 236 49.6
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 8.1e-41 172.9 289 40.5
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 8.4e-38 162.9 302 39.4
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 8.4e-38 162.9 167 51.5
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.8e-35 155.2 158 55.1
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 2.1e-33 148.3 109 69.7
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 5.3e-32 143.7 255 39.2
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 2.2e-30 138.3 187 44.4
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 8.5e-30 136.3 135 60.7
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 4.3e-26 124.0 635 25.0
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 9.7e-26 122.9 98 60.2
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 1.1e-18 99.4 96 57.3
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 5.7e-18 97.1 75 66.7
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.1e-16 90.9 132 45.5
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.3e-16 90.5 134 45.5
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.5e-15 89.0 132 43.2
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 1.1e-13 82.8 115 47.0
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.4e-13 82.4 73 60.3
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 7.2e-13 80.1 67 58.2
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 9.4e-13 79.7 81 51.9
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 7.9e-12 76.6 67 53.7
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.0e-11 74.7 66 62.1
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 3.0e-11 74.7 63 60.3
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.9e-11 74.3 68 60.3
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 3.7e-09 67.8 62 51.6
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 5.3e-08 63.9 44 68.2
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 4.5e-07 60.8 59 62.7
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 5.9e-07 60.5 136 35.3
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 1.3e-06 59.3 52 53.8
C03p89870 Brassica napus HOM05D004114 ORTHO05D004667 1.7e-06 58.9 48 62.5


User provided reference genes

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