Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 1.5e-48 196.1 112 100.0
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 1.7e-36 156.0 102 80.4
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 4.4e-24 114.8 67 85.1
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 8.0e-18 94.0 72 66.7
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 1.4e-17 93.2 67 70.1
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.3e-17 92.4 67 67.2
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.3e-17 92.4 67 67.2
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 3.0e-17 92.0 67 70.1
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 4.0e-17 91.7 67 61.2
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 6.7e-17 90.9 61 70.5
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 6.7e-17 90.9 67 68.7
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 8.8e-17 90.5 67 68.7
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 8.8e-17 90.5 67 68.7
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 8.8e-17 90.5 67 68.7
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.2e-16 90.1 67 67.2
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 1.2e-16 90.1 63 68.3
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 1.5e-16 89.7 67 65.7
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 2.0e-16 89.4 84 57.1
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.0e-16 89.4 69 65.2
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 4.4e-16 88.2 67 67.2
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 4.4e-16 88.2 67 65.7
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 4.4e-16 88.2 67 65.7
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 4.4e-16 88.2 66 65.2
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 5.7e-16 87.8 114 48.2
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 5.7e-16 87.8 72 59.7
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 9.7e-16 87.0 67 64.2
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 9.7e-16 87.0 107 48.6
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 9.7e-16 87.0 67 64.2
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 1.3e-15 86.7 100 51.0
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 1.7e-15 86.3 98 49.0
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 1.7e-15 86.3 67 64.2
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.2e-15 85.9 112 48.2
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 2.2e-15 85.9 72 63.9
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.2e-15 85.9 66 65.2
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.2e-15 85.9 66 65.2
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 3.7e-15 85.1 66 60.6
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 4.8e-15 84.7 61 67.2
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 8.2e-15 84.0 107 46.7
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 1.1e-14 83.6 70 60.0
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.1e-14 83.6 115 46.1
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.1e-14 83.6 113 45.1
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 1.4e-14 83.2 67 58.2
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 1.4e-14 83.2 67 61.2
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 1.4e-14 83.2 67 64.2
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.4e-14 83.2 118 43.2
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 1.8e-14 82.8 67 61.2
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 2.4e-14 82.4 69 56.5
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 2.4e-14 82.4 105 48.6
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.4e-14 82.4 67 61.2
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 2.4e-14 82.4 67 61.2
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 3.1e-14 82.0 75 54.7
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 3.1e-14 82.0 67 62.7
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 4.1e-14 81.6 66 57.6
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 5.3e-14 81.3 64 65.6
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 5.3e-14 81.3 67 62.7
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 5.3e-14 81.3 118 41.5
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 7.0e-14 80.9 77 61.0
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 7.0e-14 80.9 77 61.0
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 9.1e-14 80.5 68 64.7
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 9.1e-14 80.5 67 61.2
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 9.1e-14 80.5 64 60.9
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.2e-13 80.1 67 61.2
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 1.2e-13 80.1 67 64.2
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 1.6e-13 79.7 66 63.6
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 1.6e-13 79.7 64 64.1
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.7e-13 79.0 67 59.7
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.7e-13 79.0 82 52.4
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 2.7e-13 79.0 68 54.4
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 2.7e-13 79.0 67 55.2
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 3.5e-13 78.6 63 54.0
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 3.5e-13 78.6 108 41.7
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 4.5e-13 78.2 67 61.2
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 7.7e-13 77.4 61 62.3
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 7.7e-13 77.4 65 58.5
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.0e-12 77.0 103 45.6
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 1.3e-12 76.6 68 58.8
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 1.3e-12 76.6 67 56.7
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 1.3e-12 76.6 74 52.7
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.7e-12 76.3 67 58.2
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.2e-12 75.9 61 60.7
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 2.2e-12 75.9 67 58.2
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.2e-12 75.9 67 58.2
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.2e-12 75.9 67 58.2
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 2.2e-12 75.9 64 56.2
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 2.2e-12 75.9 59 61.0
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 2.2e-12 75.9 64 51.6
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.9e-12 75.5 67 58.2
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 2.9e-12 75.5 103 40.8
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.8e-12 75.1 67 53.7
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 5.0e-12 74.7 63 54.0
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 6.5e-12 74.3 60 61.7
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 8.5e-12 73.9 70 51.4
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 8.5e-12 73.9 60 60.0
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 1.1e-11 73.6 69 52.2
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.1e-11 73.6 101 42.6
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 1.5e-11 73.2 107 43.0
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.9e-11 72.8 69 49.3
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 1.9e-11 72.8 67 55.2
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 3.2e-11 72.0 61 59.0
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 3.2e-11 72.0 96 45.8
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 3.2e-11 72.0 113 39.8
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 5.5e-11 71.2 62 54.8
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 5.5e-11 71.2 57 63.2
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 5.5e-11 71.2 64 50.0
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 1.2e-10 70.1 67 53.7
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 1.6e-10 69.7 71 53.5
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 1.6e-10 69.7 71 53.5
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.6e-10 69.7 106 42.5
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 2.1e-10 69.3 95 38.9
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 2.1e-10 69.3 64 53.1
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 2.1e-10 69.3 66 50.0
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 2.1e-10 69.3 66 50.0
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 2.7e-10 68.9 63 47.6
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 3.6e-10 68.6 67 52.2
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 6.1e-10 67.8 116 39.7
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 8.0e-10 67.4 69 46.4
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 1.0e-09 67.0 62 50.0
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 1.0e-09 67.0 62 50.0
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 1.0e-09 67.0 61 54.1
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 1.8e-09 66.2 61 52.5
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 1.8e-09 66.2 74 47.3
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 1.8e-09 66.2 108 38.9
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 2.3e-09 65.9 62 51.6
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 3.0e-09 65.5 62 48.4
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 3.0e-09 65.5 106 41.5
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 4.0e-09 65.1 105 40.0
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 5.2e-09 64.7 66 50.0
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 5.2e-09 64.7 62 48.4
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 5.2e-09 64.7 61 50.8
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 5.2e-09 64.7 62 48.4
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 5.2e-09 64.7 62 48.4
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 5.2e-09 64.7 60 51.7
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 5.2e-09 64.7 62 48.4
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 6.8e-09 64.3 57 54.4
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 6.8e-09 64.3 60 53.3
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 6.8e-09 64.3 103 38.8
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 8.8e-09 63.9 65 56.9
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 8.8e-09 63.9 65 56.9
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 8.8e-09 63.9 60 51.7
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 1.2e-08 63.5 60 53.3
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 1.2e-08 63.5 98 39.8
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 1.5e-08 63.2 56 55.4
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 1.5e-08 63.2 60 53.3
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 1.5e-08 63.2 104 44.2
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 1.5e-08 63.2 60 53.3
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 1.5e-08 63.2 104 44.2
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 1.5e-08 63.2 104 44.2
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.5e-08 63.2 58 51.7
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.5e-08 63.2 57 52.6
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 1.5e-08 63.2 57 50.9
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 2.0e-08 62.8 62 51.6
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 2.0e-08 62.8 60 50.0
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 2.0e-08 62.8 60 50.0
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 2.0e-08 62.8 60 50.0
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 2.0e-08 62.8 57 54.4
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 2.0e-08 62.8 60 50.0
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 2.0e-08 62.8 59 54.2
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 2.0e-08 62.8 63 50.8
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 2.6e-08 62.4 60 51.7
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 2.6e-08 62.4 65 49.2
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 3.4e-08 62.0 58 50.0
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 3.4e-08 62.0 60 50.0
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 3.4e-08 62.0 60 51.7
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 4.4e-08 61.6 106 37.7
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 4.4e-08 61.6 106 37.7
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 9.8e-08 60.5 55 52.7
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.3e-07 60.1 55 52.7
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 1.7e-07 59.7 63 47.6
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 1.7e-07 59.7 57 49.1
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 2.2e-07 59.3 57 47.4
SEGI_13071 Sequoiadendron giganteum HOM05D002383 ORTHO05D002515 2.8e-07 58.9 72 47.2
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 3.7e-07 58.5 59 49.2
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 4.8e-07 58.2 66 42.4
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 4.8e-07 58.2 58 50.0
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 4.8e-07 58.2 63 46.0
SEGI_11683 Sequoiadendron giganteum HOM05D011262 ORTHO05D012767 1.1e-06 57.0 57 50.9


User provided reference genes

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