Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 1.0e-188 663.3 340 100.0
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 1.1e-179 633.3 358 92.2
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 1.2e-157 560.1 338 86.1
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 4.8e-151 538.1 332 83.4
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 1.5e-144 516.5 353 77.9
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 2.0e-144 516.2 353 76.8
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 9.8e-144 513.8 360 75.6
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.4e-142 509.2 320 81.2
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.4e-142 509.2 374 73.5
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 7.3e-139 497.7 331 77.9
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 1.6e-138 496.5 359 73.5
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 3.6e-138 495.4 359 73.3
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 6.1e-138 494.6 340 75.9
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 8.0e-138 494.2 334 75.1
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 1.8e-137 493.0 359 73.3
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.5e-136 490.0 330 77.3
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 5.8e-136 488.0 361 71.5
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 9.8e-136 487.3 329 76.9
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 2.2e-135 486.1 320 78.1
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 2.9e-135 485.7 311 78.1
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 8.3e-135 484.2 359 71.6
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 8.3e-135 484.2 359 71.6
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 8.3e-135 484.2 359 71.6
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.4e-134 483.4 306 80.1
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 1.9e-134 483.0 354 72.3
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.9e-134 483.0 338 75.1
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 1.9e-134 483.0 329 75.4
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 4.1e-134 481.9 328 75.0
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 7.0e-134 481.1 355 72.4
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 7.0e-134 481.1 347 73.5
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 1.2e-133 480.3 330 74.8
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.6e-133 479.9 335 74.9
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 1.6e-133 479.9 360 71.4
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 2.0e-133 479.6 332 73.5
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.7e-133 479.2 339 73.7
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 3.5e-133 478.8 331 75.2
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 6.0e-133 478.0 301 80.7
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 1.0e-132 477.2 349 72.8
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 1.7e-132 476.5 360 70.3
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 2.3e-132 476.1 364 71.2
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 3.0e-132 475.7 333 73.6
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.1e-131 473.8 361 72.0
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 1.2e-130 470.3 363 68.9
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.1e-130 469.5 320 74.4
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 2.1e-130 469.5 374 67.9
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 3.6e-130 468.8 363 70.0
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 4.7e-130 468.4 371 68.2
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 8.0e-130 467.6 335 72.2
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 1.8e-129 466.5 333 72.4
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.8e-129 466.5 366 68.9
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 2.3e-129 466.1 339 72.0
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 2.3e-129 466.1 365 69.3
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 4.0e-129 465.3 338 71.0
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 6.8e-129 464.5 302 76.8
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 6.8e-129 464.5 334 72.2
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 1.2e-128 463.8 331 71.9
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 2.0e-128 463.0 345 71.3
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 3.4e-128 462.2 334 72.2
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 3.4e-128 462.2 355 69.6
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 4.4e-128 461.8 334 72.2
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 4.4e-128 461.8 334 73.1
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 7.5e-128 461.1 355 69.0
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 7.5e-128 461.1 333 71.8
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 9.8e-128 460.7 329 73.6
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 1.3e-127 460.3 361 69.0
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.3e-127 460.3 329 73.3
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 1.7e-127 459.9 360 68.9
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.7e-127 459.9 354 70.3
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 1.1e-126 457.2 361 67.9
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.4e-126 456.8 329 72.3
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 1.9e-126 456.4 331 71.9
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 1.9e-126 456.4 299 76.9
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 2.4e-126 456.1 336 70.5
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 4.1e-126 455.3 338 71.6
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 4.1e-126 455.3 338 71.9
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 3.5e-125 452.2 335 69.9
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 6.0e-125 451.4 330 71.5
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 7.8e-125 451.1 341 71.8
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 7.8e-125 451.1 381 66.1
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 1.0e-124 450.7 325 70.8
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.3e-124 450.3 329 73.3
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 2.3e-124 449.5 333 70.0
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 2.3e-124 449.5 330 70.9
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 3.0e-124 449.1 316 72.5
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 3.0e-124 449.1 336 70.2
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 9.5e-123 444.1 324 71.0
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 9.5e-123 444.1 361 67.6
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.6e-122 443.4 331 69.5
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 4.7e-122 441.8 327 69.1
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 1.1e-121 440.7 328 69.2
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 5.2e-121 438.3 336 65.8
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 6.8e-121 438.0 329 68.1
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 8.9e-121 437.6 336 66.4
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 1.2e-120 437.2 338 69.5
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 2.6e-120 436.0 339 67.3
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 2.4e-118 429.5 328 67.1
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 9.2e-118 427.6 335 65.1
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 9.2e-118 427.6 261 81.2
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 3.0e-116 422.5 346 61.8
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 4.3e-115 418.7 337 68.8
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 4.3e-115 418.7 358 64.0
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 5.6e-115 418.3 332 67.2
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 7.3e-115 417.9 346 65.3
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 1.6e-114 416.8 357 62.5
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 2.1e-114 416.4 334 65.0
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 3.6e-114 415.6 289 71.6
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 3.6e-114 415.6 331 66.5
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 1.8e-113 413.3 339 61.4
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 4.0e-113 412.1 332 61.7
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 9.9e-112 407.5 357 61.6
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 2.9e-111 406.0 345 62.9
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 2.9e-111 406.0 345 62.9
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 1.1e-110 404.1 356 60.7
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 1.1e-110 404.1 345 62.3
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 1.1e-110 404.1 345 62.3
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 1.4e-110 403.7 357 61.1
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 4.2e-110 402.1 361 60.7
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 4.2e-110 402.1 357 61.1
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 4.2e-110 402.1 357 61.3
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 5.4e-110 401.7 356 60.4
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 9.3e-110 401.0 354 61.3
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 1.2e-109 400.6 226 90.3
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 2.1e-109 399.8 357 60.5
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 2.1e-109 399.8 357 60.5
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 2.7e-109 399.4 331 62.8
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 4.6e-109 398.7 359 60.2
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 1.3e-108 397.1 355 60.8
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 1.7e-108 396.7 357 60.5
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 1.5e-107 393.7 336 59.5
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 5.3e-105 385.2 329 61.1
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 2.0e-104 383.3 349 61.6
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 7.6e-104 381.3 259 73.7
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 7.6e-104 381.3 333 61.6
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 3.6e-98 362.5 270 67.0
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 5.4e-94 348.6 354 55.1
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 3.5e-93 345.9 282 66.3
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 6.0e-93 345.1 326 60.7
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 4.8e-90 335.5 278 66.2
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 1.3e-87 327.4 264 62.9
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 1.9e-86 323.6 200 80.5
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 3.9e-84 315.8 336 50.9
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 6.9e-81 305.1 337 50.1
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 3.4e-80 302.8 214 73.4
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 2.7e-77 293.1 277 55.2
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 3.5e-77 292.7 357 49.6
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 6.7e-76 288.5 293 51.9
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 8.7e-76 288.1 222 68.5
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 1.1e-75 287.7 220 68.6
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 1.1e-73 281.2 203 70.9
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 5.9e-72 275.4 267 58.1
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 2.2e-71 273.5 217 66.8
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 5.0e-63 245.7 285 45.3
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.2e-50 203.8 180 63.3
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.1e-41 174.9 171 57.3
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 4.1e-41 172.9 105 80.0
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 9.1e-41 171.8 105 79.0
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 4.5e-40 169.5 105 79.0
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 4.4e-35 152.9 108 73.1
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 4.1e-33 146.4 88 75.0
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 1.8e-25 120.9 86 64.0
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 1.3e-23 114.8 270 28.9
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 3.2e-17 93.6 238 29.8


User provided reference genes

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