Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 1.4e-262 909.4 574 100.0
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 3.2e-248 861.7 574 95.1
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 2.8e-191 672.5 585 80.3
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 1.9e-187 659.8 591 80.4
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 1.5e-157 560.5 599 71.6
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 2.3e-153 546.6 594 69.0
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 1.6e-109 401.0 595 48.2
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 1.0e-108 398.3 307 91.5
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 4.3e-107 392.9 582 45.9
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.8e-105 387.5 582 49.7
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 2.0e-104 384.0 578 46.0
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 1.3e-103 381.3 578 45.7
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 1.5e-99 367.9 481 60.7
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 4.0e-97 359.8 408 55.4
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 8.9e-97 358.6 590 46.4
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 1.1e-91 341.7 583 43.9
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 8.1e-90 335.5 493 50.1
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 1.1e-89 335.1 576 43.9
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 1.2e-88 331.6 586 45.9
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 1.2e-88 331.6 583 41.2
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 4.4e-88 329.7 599 42.9
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 5.8e-88 329.3 591 45.0
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 5.8e-88 329.3 564 44.1
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.3e-87 328.2 590 42.2
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 1.1e-86 325.1 595 43.9
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 9.2e-86 322.0 603 43.4
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.3e-84 317.4 573 41.7
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 8.6e-84 315.5 513 50.7
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 8.6e-84 315.5 495 45.5
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 1.1e-83 315.1 487 46.0
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.9e-83 314.3 575 45.4
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 3.3e-83 313.5 614 39.6
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 5.6e-83 312.8 576 41.3
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 9.5e-83 312.0 586 42.8
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 3.6e-82 310.1 571 41.3
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 4.7e-82 309.7 456 46.3
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 2.4e-81 307.4 571 44.1
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 5.2e-81 306.2 600 39.8
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 9.9e-80 302.0 500 43.8
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 1.7e-79 301.2 589 39.4
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 4.9e-79 299.7 404 49.0
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 6.4e-79 299.3 463 45.1
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 8.4e-79 298.9 561 40.5
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 7.1e-78 295.8 595 39.3
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 7.1e-78 295.8 578 39.3
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 2.7e-77 293.9 482 42.5
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 4.6e-77 293.1 593 41.1
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 1.3e-76 291.6 576 39.8
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.3e-76 291.6 597 38.2
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.3e-76 291.6 578 38.8
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 2.3e-76 290.8 590 41.5
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 3.0e-76 290.4 506 46.6
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 5.1e-76 289.7 580 39.5
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 6.6e-76 289.3 597 38.7
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 2.5e-75 287.3 581 39.2
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 2.5e-75 287.3 499 42.3
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 6.2e-74 282.7 591 37.2
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.1e-73 282.0 488 46.7
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 1.1e-73 282.0 582 40.2
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 2.4e-73 280.8 488 47.7
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.0e-73 280.0 589 38.9
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 2.0e-72 277.7 461 46.6
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 5.8e-72 276.2 469 44.8
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.8e-72 276.2 621 36.7
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 1.3e-71 275.0 589 37.9
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 1.2e-69 268.5 580 37.9
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 3.5e-69 266.9 574 39.9
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 7.8e-69 265.8 580 38.6
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 2.3e-68 264.2 401 48.4
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 6.6e-68 262.7 469 40.9
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 6.6e-68 262.7 469 40.9
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 4.3e-67 260.0 591 38.6
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 9.6e-67 258.8 590 38.1
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 3.6e-66 256.9 574 36.6
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 6.2e-66 256.1 559 39.5
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 2.4e-65 254.2 599 37.7
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.0e-65 253.4 615 35.8
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 4.0e-65 253.4 457 40.3
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 6.9e-65 252.7 472 41.5
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 4.5e-64 250.0 475 40.8
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 5.8e-64 249.6 391 43.7
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 8.4e-63 245.7 414 47.8
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 8.4e-63 245.7 582 38.3
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 8.4e-63 245.7 470 40.6
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 5.4e-62 243.0 390 42.1
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 5.4e-62 243.0 589 35.5
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.3e-60 237.7 493 43.0
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 8.7e-60 235.7 323 50.5
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 2.5e-59 234.2 612 35.1
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 4.3e-59 233.4 584 36.6
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.6e-58 231.5 498 39.8
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 2.8e-58 230.7 601 34.8
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 6.9e-57 226.1 462 37.2
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 9.0e-57 225.7 468 40.6
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 9.0e-57 225.7 581 35.1
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 5.8e-56 223.0 589 34.3
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.3e-55 221.9 399 40.9
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.7e-53 214.2 327 46.2
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 6.0e-53 213.0 571 38.2
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 3.1e-49 200.7 472 40.5
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 5.3e-49 199.9 474 42.0
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 6.5e-47 193.0 473 34.7
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 1.8e-44 184.9 483 38.3
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.1e-43 182.2 488 33.6
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 4.5e-40 170.2 462 32.7
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 1.0e-39 169.1 334 38.0
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 3.2e-38 164.1 312 39.4
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 1.0e-36 159.1 327 35.8
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 6.7e-36 156.4 485 36.1
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 1.5e-35 155.2 493 29.2
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 1.9e-35 154.8 475 36.6
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 9.7e-35 152.5 477 34.4
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 2.2e-34 151.4 473 31.5
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 6.3e-34 149.8 357 40.1
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 1.4e-33 148.7 393 34.6
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 8.5e-31 139.4 464 31.2
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 9.4e-30 136.0 353 40.2
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 9.4e-30 136.0 350 40.6
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 1.2e-29 135.6 459 35.9
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 6.1e-29 133.3 126 54.0
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 2.3e-28 131.3 364 38.5
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 5.7e-27 126.7 199 45.2
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 9.7e-27 125.9 461 34.3
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.7e-26 125.2 199 51.3
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 2.2e-26 124.8 262 36.6
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 2.8e-26 124.4 285 35.4
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 2.8e-26 124.4 285 35.4
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 3.7e-26 124.0 223 48.9
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 1.8e-25 121.7 364 37.6
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 1.8e-25 121.7 285 34.7
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 9.1e-25 119.4 393 31.3
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 1.0e-23 115.9 469 32.2
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 1.3e-23 115.5 252 34.9
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 3.6e-21 107.5 300 33.7
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 3.6e-21 107.5 68 76.5
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 7.7e-16 89.7 133 45.9
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 5.5e-14 83.6 95 51.6
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.2e-11 75.9 52 69.2
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 8.2e-10 69.7 178 34.8
MSTRG.18434 Avicennia marina HOM05D001846 ORTHO05D005785 1.2e-08 65.9 222 37.4
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 1.7e-07 62.0 87 42.5
unitig_62.g23880 Utricularia gibba HOM05D001846 ORTHO05D005785 2.2e-07 61.6 167 32.3
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 6.5e-07 60.1 79 48.1
QL10p038631 Quercus lobata HOM05D001846 ORTHO05D005785 4.2e-06 57.4 132 37.1


User provided reference genes

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