Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 1.4e-44 182.6 93 100.0
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 1.1e-41 172.9 93 92.5
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 4.3e-41 171.0 93 91.4
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.6e-40 169.1 93 90.3
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 1.4e-39 166.0 111 80.2
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 1.5e-30 136.0 93 71.0
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 2.0e-30 135.6 93 71.0
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 3.4e-30 134.8 93 68.8
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 1.7e-29 132.5 93 71.0
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 2.9e-29 131.7 93 67.7
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 3.7e-29 131.3 93 73.1
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 6.4e-29 130.6 93 68.8
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 1.1e-28 129.8 93 73.1
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 1.1e-28 129.8 93 67.7
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 1.4e-28 129.4 74 89.2
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 1.9e-28 129.0 93 71.0
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 2.4e-28 128.6 91 71.4
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 2.4e-28 128.6 87 72.4
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 2.4e-28 128.6 87 72.4
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 2.4e-28 128.6 93 68.8
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 4.1e-28 127.9 93 73.1
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 4.1e-28 127.9 93 67.7
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 5.4e-28 127.5 93 71.0
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 5.4e-28 127.5 92 69.6
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 9.2e-28 126.7 93 67.7
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 9.2e-28 126.7 93 67.7
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 9.2e-28 126.7 92 68.5
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.2e-27 126.3 93 71.0
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 1.2e-27 126.3 92 68.5
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 1.2e-27 126.3 102 67.6
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.2e-27 126.3 93 69.9
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 1.6e-27 125.9 91 67.0
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 2.7e-27 125.2 93 69.9
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.7e-27 125.2 93 69.9
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 2.7e-27 125.2 93 69.9
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 2.7e-27 125.2 88 69.3
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 2.7e-27 125.2 93 67.7
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 3.5e-27 124.8 93 71.0
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 3.5e-27 124.8 92 67.4
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 4.6e-27 124.4 93 64.5
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 4.6e-27 124.4 93 67.7
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 4.6e-27 124.4 93 67.7
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 4.6e-27 124.4 93 67.7
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 6.0e-27 124.0 93 67.7
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 6.0e-27 124.0 93 66.7
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 6.0e-27 124.0 93 66.7
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 6.0e-27 124.0 93 66.7
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 6.0e-27 124.0 92 68.5
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 6.0e-27 124.0 93 67.7
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 7.8e-27 123.6 93 65.6
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 7.8e-27 123.6 106 66.0
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.0e-26 123.2 93 66.7
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 1.3e-26 122.9 92 69.6
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 1.3e-26 122.9 93 69.9
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.3e-26 122.9 93 66.7
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.7e-26 122.5 93 67.7
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 3.0e-26 121.7 93 68.8
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 3.0e-26 121.7 93 68.8
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 3.9e-26 121.3 93 66.7
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 5.1e-26 120.9 76 77.6
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 5.1e-26 120.9 93 63.4
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 8.6e-26 120.2 76 71.1
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 1.1e-25 119.8 92 63.0
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 1.1e-25 119.8 93 64.5
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.5e-25 119.4 93 64.5
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 1.5e-25 119.4 84 67.9
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 1.5e-25 119.4 84 67.9
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.9e-25 119.0 93 65.6
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 1.9e-25 119.0 92 66.3
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 2.5e-25 118.6 76 69.7
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 3.3e-25 118.2 93 68.8
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 3.3e-25 118.2 93 65.6
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 3.3e-25 118.2 93 60.2
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 4.3e-25 117.9 76 68.4
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 4.3e-25 117.9 76 68.4
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 5.6e-25 117.5 76 69.7
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 5.6e-25 117.5 93 65.6
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 5.6e-25 117.5 93 67.7
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 7.3e-25 117.1 93 65.6
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 9.5e-25 116.7 93 61.3
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.2e-24 116.3 93 60.2
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 1.2e-24 116.3 93 66.7
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 1.2e-24 116.3 94 62.8
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.6e-24 115.9 93 60.2
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 1.6e-24 115.9 93 59.1
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.6e-24 115.9 76 68.4
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 2.1e-24 115.5 82 63.4
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 2.8e-24 115.2 76 68.4
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 2.8e-24 115.2 76 68.4
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 2.8e-24 115.2 76 68.4
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 2.8e-24 115.2 86 60.5
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 3.6e-24 114.8 76 68.4
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 3.6e-24 114.8 76 68.4
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 3.6e-24 114.8 76 68.4
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 3.6e-24 114.8 93 64.5
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 4.7e-24 114.4 92 60.9
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 4.7e-24 114.4 76 68.4
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 4.7e-24 114.4 93 61.3
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 4.7e-24 114.4 94 60.6
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 4.7e-24 114.4 92 60.9
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 4.7e-24 114.4 76 68.4
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 6.2e-24 114.0 93 60.2
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 8.1e-24 113.6 114 56.1
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 1.1e-23 113.2 76 68.4
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 1.1e-23 113.2 75 68.0
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.4e-23 112.8 94 62.8
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 3.1e-23 111.7 95 61.1
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 3.1e-23 111.7 94 61.7
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 8.9e-23 110.2 92 60.9
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 2.0e-22 109.0 75 66.7
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 2.6e-22 108.6 92 56.5
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 9.9e-22 106.7 86 57.0
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 9.9e-22 106.7 91 63.7
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 1.3e-21 106.3 93 53.8
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 1.7e-21 105.9 70 68.6
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 8.4e-21 103.6 94 61.7
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 1.1e-20 103.2 92 54.3
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.4e-20 102.8 73 60.3
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 1.9e-20 102.4 75 64.0
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 1.9e-20 102.4 75 69.3
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 4.1e-20 101.3 94 57.4
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 7.1e-20 100.5 74 63.5
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 9.2e-20 100.1 93 54.8
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 9.2e-20 100.1 75 60.0
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 9.2e-20 100.1 88 58.0
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 1.2e-19 99.8 93 54.8
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 2.7e-19 98.6 94 54.3
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 6.0e-19 97.4 75 57.3
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 1.0e-18 96.7 88 52.3
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 1.7e-18 95.9 75 68.0
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 1.5e-17 92.8 75 69.3
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 2.5e-17 92.0 94 50.0
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 4.3e-17 91.3 94 52.1
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 3.6e-16 88.2 59 69.5
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 4.7e-16 87.8 75 64.0
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 3.1e-15 85.1 63 61.9
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 5.2e-15 84.3 78 53.8
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 2.6e-14 82.0 76 57.9
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 3.4e-14 81.6 57 64.9
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 4.4e-14 81.3 97 48.5
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 1.3e-13 79.7 89 51.7
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 3.8e-13 78.2 51 72.5
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 4.2e-12 74.7 85 49.4
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 3.0e-10 68.6 89 48.3
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 5.1e-10 67.8 70 52.9
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 4.0e-07 58.2 56 48.2


User provided reference genes

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