Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 0.0e+00 1867.0 902 100.0
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 0.0e+00 1795.4 924 94.9
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 0.0e+00 1620.1 853 92.6
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 0.0e+00 1589.3 928 83.8
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1523.8 937 80.6
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 0.0e+00 1460.7 911 78.4
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1443.7 896 79.4
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 0.0e+00 1184.5 937 60.4
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 0.0e+00 1156.4 915 61.1
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 0.0e+00 1147.1 910 60.1
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 0.0e+00 1145.2 948 60.0
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 0.0e+00 1144.4 918 60.3
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 0.0e+00 1136.7 921 59.8
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1136.3 923 59.6
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 0.0e+00 1134.0 925 59.4
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 0.0e+00 1132.5 941 59.6
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1131.7 944 58.2
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 0.0e+00 1127.1 851 64.6
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 0.0e+00 1126.7 926 59.6
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1124.0 939 58.6
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1122.8 940 58.6
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1118.2 940 58.2
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 0.0e+00 1117.8 943 58.1
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 0.0e+00 1112.4 977 56.8
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 0.0e+00 1110.5 930 58.5
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1108.6 958 57.3
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1098.6 936 58.2
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1091.3 923 57.2
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 0.0e+00 1088.9 935 56.4
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 0.0e+00 1087.4 922 56.7
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 0.0e+00 1076.2 937 57.8
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 6.2e-312 1073.9 937 57.6
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 6.2e-312 1073.9 901 57.2
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 9.3e-311 1070.1 893 58.1
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 2.1e-310 1068.9 901 56.9
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 2.7e-310 1068.5 821 63.5
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 3.0e-309 1065.1 827 62.2
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 2.6e-308 1062.0 881 59.0
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 6.3e-307 1057.4 932 56.8
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 5.9e-305 1050.8 931 55.6
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 1.7e-304 1049.3 927 57.6
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 1.6e-302 1042.7 866 58.4
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 3.0e-301 1038.5 930 54.5
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 3.1e-298 1028.5 932 54.9
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 3.1e-298 1028.5 934 55.8
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 4.4e-292 1008.1 889 55.5
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 5.7e-292 1007.7 814 58.2
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 2.2e-291 1005.7 785 61.5
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 8.6e-288 993.8 910 54.1
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 4.3e-287 991.5 912 53.6
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 1.6e-286 989.6 909 54.5
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 2.8e-286 988.8 911 53.2
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 4.0e-285 984.9 910 53.8
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 6.8e-285 984.2 873 56.9
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 8.9e-285 983.8 910 54.8
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 2.6e-284 982.2 895 54.1
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 7.5e-284 980.7 875 56.5
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 1.3e-283 979.9 892 54.6
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 3.7e-283 978.4 710 64.6
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 1.7e-280 969.5 893 54.4
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 6.6e-280 967.6 914 53.2
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 1.1e-279 966.8 925 53.1
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 2.5e-279 965.7 909 52.5
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 9.5e-279 963.8 891 54.4
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 2.8e-278 962.2 926 51.9
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 1.5e-276 956.4 897 52.8
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 5.8e-276 954.5 929 52.9
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 1.7e-275 953.0 925 52.2
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 2.9e-275 952.2 907 52.6
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 7.0e-274 947.6 930 50.9
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 1.1e-271 940.3 915 51.0
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 5.6e-271 937.9 916 52.2
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 2.1e-270 936.0 916 52.1
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 1.3e-264 916.8 801 56.3
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 5.1e-264 914.8 889 52.2
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 2.0e-260 902.9 797 55.7
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 8.4e-259 897.5 813 54.1
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 8.4e-259 897.5 813 54.1
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 5.4e-258 894.8 721 60.2
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 6.6e-256 887.9 870 51.6
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.9e-250 869.8 711 59.4
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 1.4e-245 853.6 709 57.4
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 9.0e-245 850.9 872 50.6
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 5.4e-242 841.6 943 47.0
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 8.7e-240 834.3 935 46.5
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 2.8e-238 829.3 637 62.0
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.1e-223 780.8 620 61.1
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 5.1e-216 755.4 814 48.8
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 4.7e-193 679.1 489 65.2
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 8.8e-192 674.9 937 42.6
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 2.4e-189 666.8 650 50.5
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 4.1e-181 639.4 578 52.8
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 6.5e-179 632.1 973 37.2
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 3.2e-157 560.1 432 61.6
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 2.0e-156 557.4 502 56.4
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 1.2e-137 495.0 562 47.3
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 4.4e-135 486.5 468 53.8
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 3.3e-130 470.3 497 45.3
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 4.6e-116 423.3 845 32.3
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 6.2e-113 412.9 381 53.0
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.3e-107 395.2 205 91.2
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 6.7e-107 392.9 397 53.1
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 2.1e-100 371.3 301 57.5
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.1e-64 252.7 296 48.3
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 8.9e-59 233.0 242 51.2
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 5.9e-55 220.3 109 91.7
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 1.7e-54 218.8 268 44.8
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 2.9e-54 218.0 304 39.8
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 5.0e-54 217.2 253 49.4
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 6.1e-52 210.3 231 49.4
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 1.0e-30 139.8 134 56.7
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 2.3e-30 138.7 133 54.1
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 4.7e-28 131.0 122 54.9
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 2.9e-25 121.7 210 34.8
PRCOL_00003209 Prasinoderma coloniale HOM05D006404 ORTHO05D008170 2.1e-23 115.5 812 21.6
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 1.5e-21 109.4 70 70.0
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 1.1e-16 93.2 97 49.5
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 6.0e-15 87.4 75 57.3
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 2.5e-13 82.0 62 54.8
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 1.1e-11 76.6 63 57.1
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 9.9e-10 70.1 41 73.2
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 1.3e-09 69.7 53 56.6
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 6.4e-09 67.4 84 48.8
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 3.2e-08 65.1 61 49.2


User provided reference genes

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