Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 2.0e-95 352.4 178 100.0
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 2.7e-92 342.0 178 97.8
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 1.0e-88 330.1 178 94.4
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 1.3e-78 296.6 182 84.1
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 7.1e-77 290.8 182 82.4
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 1.6e-76 289.7 182 82.4
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 9.9e-63 243.8 174 74.1
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 1.3e-59 233.4 182 65.4
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 6.6e-59 231.1 174 67.8
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 8.1e-57 224.2 177 65.5
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 2.4e-56 222.6 176 66.5
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 5.8e-55 218.0 176 63.1
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 2.2e-54 216.1 176 62.5
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 2.2e-54 216.1 181 62.4
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 4.2e-53 211.8 170 63.5
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 4.2e-53 211.8 173 61.8
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 7.1e-53 211.1 179 62.0
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 9.3e-53 210.7 178 62.9
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 7.9e-52 207.6 179 63.1
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 1.3e-51 206.8 179 63.1
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 1.8e-51 206.5 180 60.6
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 8.7e-51 204.1 172 60.5
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 4.3e-50 201.8 173 60.1
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 2.8e-49 199.1 177 59.3
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 2.4e-48 196.1 170 60.0
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 5.3e-48 194.9 183 56.8
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 1.5e-47 193.4 182 58.8
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 1.5e-47 193.4 182 56.0
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 2.0e-47 193.0 180 54.4
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 4.5e-47 191.8 184 57.6
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 4.9e-46 188.3 183 55.7
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 4.9e-46 188.3 183 55.7
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 6.4e-46 188.0 173 59.0
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 8.4e-46 187.6 183 54.6
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 3.2e-45 185.7 179 55.9
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 4.2e-45 185.3 183 56.3
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 5.5e-45 184.9 183 55.7
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 5.5e-45 184.9 182 54.9
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 7.1e-45 184.5 183 55.2
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 7.1e-45 184.5 178 52.2
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 1.6e-44 183.3 181 54.1
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 2.7e-44 182.6 178 57.9
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 2.7e-44 182.6 183 55.2
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 3.5e-44 182.2 183 55.7
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 4.6e-44 181.8 180 51.7
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 6.0e-44 181.4 179 55.3
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 1.0e-43 180.6 183 54.1
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 3.9e-43 178.7 174 55.2
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 5.1e-43 178.3 177 54.2
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 6.7e-43 177.9 175 57.1
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 6.7e-43 177.9 182 52.7
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 8.7e-43 177.6 187 54.5
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 1.9e-42 176.4 184 52.7
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 2.5e-42 176.0 184 56.5
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 2.5e-42 176.0 182 53.8
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 3.3e-42 175.6 182 52.2
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 5.6e-42 174.9 180 53.9
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 7.4e-42 174.5 180 52.2
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 9.6e-42 174.1 180 52.2
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 9.6e-42 174.1 174 55.7
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 9.6e-42 174.1 172 52.9
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.3e-41 173.7 178 51.1
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 2.1e-41 172.9 184 53.8
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 3.7e-41 172.2 187 56.7
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 3.7e-41 172.2 183 53.0
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 6.2e-41 171.4 177 53.1
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 6.2e-41 171.4 182 52.2
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 8.2e-41 171.0 182 54.4
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 1.1e-40 170.6 178 50.6
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 1.4e-40 170.2 175 52.6
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 4.0e-40 168.7 182 52.2
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 5.3e-40 168.3 175 50.9
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 6.9e-40 167.9 177 49.7
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 1.5e-39 166.8 171 56.1
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 1.0e-38 164.1 168 52.4
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 3.8e-38 162.2 168 54.2
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 6.5e-38 161.4 167 52.1
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 6.5e-38 161.4 181 50.8
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 1.1e-37 160.6 178 50.0
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 1.1e-37 160.6 178 50.0
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.4e-37 160.2 183 51.9
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 1.4e-37 160.2 183 51.9
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 1.9e-37 159.8 175 48.6
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 2.5e-37 159.5 168 55.4
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 2.5e-37 159.5 170 55.9
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 3.2e-37 159.1 175 52.6
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 7.1e-37 157.9 174 48.3
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 7.1e-37 157.9 173 52.6
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 9.3e-37 157.5 168 54.2
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 1.6e-36 156.8 120 60.8
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 1.6e-36 156.8 173 55.5
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 3.5e-36 155.6 185 49.7
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 3.5e-36 155.6 167 53.3
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 6.0e-36 154.8 189 49.2
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 7.9e-36 154.5 168 54.2
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 7.9e-36 154.5 172 51.7
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 1.8e-35 153.3 171 52.6
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 2.3e-35 152.9 167 55.1
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 4.3e-34 148.7 168 53.0
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 9.7e-34 147.5 181 48.1
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 9.7e-34 147.5 117 61.5
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 8.2e-33 144.4 172 47.1
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 1.4e-32 143.7 170 47.6
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 1.2e-31 140.6 173 46.2
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 2.0e-31 139.8 172 47.7
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 4.5e-31 138.7 173 45.1
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 5.9e-31 138.3 173 45.7
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 7.6e-31 137.9 173 45.7
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 7.6e-31 137.9 172 46.5
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 2.2e-30 136.3 180 48.3
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 3.2e-29 132.5 173 43.4
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 5.5e-29 131.7 173 43.4
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 5.5e-29 131.7 173 43.4
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 9.3e-29 131.0 175 44.6
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 2.1e-28 129.8 171 43.9
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 2.7e-28 129.4 178 43.3
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 2.7e-28 129.4 178 43.3
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 4.6e-28 128.6 182 47.8
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 4.6e-28 128.6 175 41.7
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 6.1e-28 128.3 175 44.6
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 7.9e-28 127.9 173 42.8
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 7.9e-28 127.9 172 43.0
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 1.8e-27 126.7 178 42.7
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 1.8e-27 126.7 178 42.7
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 3.3e-26 122.5 171 42.1
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 7.4e-26 121.3 114 57.9
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 9.7e-26 120.9 197 41.1
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 1.3e-25 120.6 173 41.0
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 5.3e-24 115.2 111 52.3
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 3.4e-15 85.9 187 31.6
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 6.5e-14 81.6 179 33.0
CBR_g50926 Chara braunii HOM05D005835 ORTHO05D007187 1.4e-11 73.9 93 43.0
Pp3c8_11610 Physcomitrium patens HOM05D005835 ORTHO05D007187 6.7e-11 71.6 180 30.0


User provided reference genes

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