Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 6.6e-246 853.6 431 100.0
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 2.4e-243 845.1 431 98.6
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 2.9e-241 838.2 431 97.9
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 9.9e-226 786.6 431 92.1
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 5.1e-222 774.2 436 89.7
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 4.1e-203 711.4 436 84.4
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 5.1e-190 667.9 404 79.7
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.2e-186 656.8 414 77.3
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 2.0e-186 656.0 404 77.5
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 7.7e-186 654.1 417 76.5
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 2.9e-185 652.1 407 78.1
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 6.5e-185 651.0 423 79.0
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.4e-184 649.8 405 78.5
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 2.5e-184 649.0 416 75.2
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 3.6e-183 645.2 400 77.5
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 1.8e-182 642.9 403 76.2
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 1.8e-182 642.9 399 77.2
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 2.3e-182 642.5 429 73.0
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 3.0e-182 642.1 403 76.7
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 1.1e-181 640.2 400 76.5
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 1.5e-181 639.8 405 76.0
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 1.5e-181 639.8 404 76.2
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 2.6e-181 639.0 403 76.4
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 2.6e-181 639.0 404 75.7
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 2.2e-180 636.0 406 75.6
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 4.8e-180 634.8 429 73.0
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 8.2e-180 634.0 398 76.1
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 1.1e-179 633.6 393 78.1
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 2.4e-179 632.5 399 76.2
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 5.3e-179 631.3 446 71.7
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 7.0e-179 630.9 390 77.9
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 9.1e-179 630.6 399 76.4
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 1.6e-178 629.8 399 76.7
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 2.0e-178 629.4 418 74.6
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 2.0e-178 629.4 417 75.3
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 2.6e-178 629.0 397 75.3
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 3.5e-178 628.6 393 77.4
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 7.7e-178 627.5 400 74.5
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 1.0e-177 627.1 401 74.8
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 1.3e-177 626.7 428 72.9
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 1.7e-177 626.3 398 75.1
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 1.7e-177 626.3 398 75.6
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 2.2e-177 625.9 429 72.7
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 2.2e-177 625.9 424 71.9
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 3.8e-177 625.2 394 76.1
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 6.5e-177 624.4 401 74.6
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 8.5e-177 624.0 408 73.8
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 1.1e-176 623.6 403 74.2
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 2.5e-176 622.5 416 72.4
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 3.2e-176 622.1 386 78.2
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 7.2e-176 620.9 417 72.4
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 7.2e-176 620.9 417 72.4
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 9.4e-176 620.5 403 73.7
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 2.1e-175 619.4 405 74.3
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 6.1e-175 617.8 417 72.2
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 1.8e-174 616.3 390 76.4
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 6.7e-174 614.4 413 72.2
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 3.3e-173 612.1 403 73.9
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 5.7e-173 611.3 433 69.7
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 2.2e-172 609.4 398 73.1
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.2e-172 609.4 417 71.0
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 4.1e-171 605.1 454 68.1
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 5.3e-171 604.7 403 73.4
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 5.3e-171 604.7 398 73.1
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 1.2e-170 603.6 398 73.4
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 1.6e-170 603.2 414 70.0
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 4.5e-170 601.7 398 73.4
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 5.9e-170 601.3 410 71.2
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 2.9e-169 599.0 398 72.6
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 3.8e-169 598.6 398 72.4
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 5.0e-169 598.2 398 73.1
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 8.5e-169 597.4 398 72.1
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 8.0e-167 590.9 384 75.3
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 4.0e-166 588.6 389 73.5
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 4.4e-165 585.1 398 71.9
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 5.7e-165 584.7 398 71.9
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 3.7e-164 582.0 420 69.5
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 4.1e-163 578.6 398 71.1
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 4.1e-163 578.6 398 71.1
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 7.0e-163 577.8 411 68.1
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 5.0e-161 571.6 561 56.0
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 4.0e-158 562.0 400 70.2
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 8.9e-158 560.8 354 77.1
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 4.4e-157 558.5 387 69.3
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 2.2e-156 556.2 413 65.9
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 2.8e-156 555.8 395 67.8
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 4.9e-156 555.1 399 66.4
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.4e-155 553.5 371 73.0
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 1.8e-155 553.1 354 75.7
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.9e-153 545.8 370 73.0
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 2.9e-153 545.8 436 63.8
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 2.1e-151 539.7 331 78.2
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 8.9e-150 534.3 398 66.6
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 3.9e-145 518.8 395 61.8
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 2.5e-144 516.2 383 68.1
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.5e-144 516.2 371 68.7
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 5.6e-144 515.0 392 64.3
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 1.2e-141 507.3 377 64.5
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 2.1e-138 496.5 344 68.3
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 2.7e-138 496.1 387 61.0
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.0e-137 494.2 338 69.5
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 4.7e-135 485.3 310 75.8
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 9.9e-133 477.6 334 70.1
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 4.7e-127 458.8 399 60.4
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.9e-120 436.8 325 68.3
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 1.3e-116 424.1 334 65.6
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 1.7e-113 413.7 373 53.6
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 4.5e-109 399.1 266 74.4
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 2.2e-108 396.7 264 71.6
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 3.3e-104 382.9 277 69.0
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 3.1e-102 376.3 410 49.0
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 2.6e-101 373.2 343 57.1
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 5.8e-101 372.1 319 62.1
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.1e-94 351.3 227 74.4
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 1.2e-93 347.8 406 45.6
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 3.8e-92 342.8 398 46.0
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 8.8e-65 251.9 168 66.7
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 2.2e-63 247.3 264 49.2
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 1.7e-60 237.7 229 55.9
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 6.3e-55 219.2 149 69.1
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.4e-54 218.0 128 79.7
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 1.6e-53 214.5 155 67.7
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 6.5e-52 209.1 338 34.9
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 7.5e-48 195.7 120 75.8
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-45 187.2 167 56.9
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.3e-36 158.3 142 57.7
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 2.0e-29 134.4 418 28.5
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.9e-27 127.9 96 72.9
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 7.3e-27 125.9 108 58.3
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 4.7e-26 123.2 85 70.6
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.1e-22 112.1 94 59.6
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.1e-17 95.5 64 62.5
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.4e-14 85.1 83 54.2
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 3.9e-12 77.0 62 59.7
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 3.9e-12 77.0 69 55.1
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 1.1e-11 75.5 49 71.4
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 2.6e-08 64.3 56 53.6
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 1.3e-07 62.0 44 68.2
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 3.8e-07 60.5 45 55.6


User provided reference genes

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