Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 2.1e-187 659.1 385 100.0
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 6.7e-181 637.5 385 93.0
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 7.4e-180 634.0 385 94.0
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 1.1e-162 577.0 387 80.6
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 2.4e-154 549.3 388 76.5
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 1.0e-152 543.9 388 76.8
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 3.2e-127 459.1 387 67.2
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 4.3e-111 405.6 382 57.3
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 2.1e-110 403.3 386 59.3
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 4.7e-110 402.1 384 61.2
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 1.0e-109 401.0 388 60.1
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 8.9e-109 397.9 362 62.7
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 6.4e-107 391.7 384 61.2
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 4.1e-106 389.0 398 57.3
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 3.5e-105 386.0 357 61.6
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 7.8e-105 384.8 387 57.1
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 1.9e-103 380.2 410 55.1
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 5.6e-103 378.6 388 58.5
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 9.5e-103 377.9 384 55.7
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 3.6e-102 375.9 388 53.6
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 8.0e-102 374.8 393 58.0
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 8.0e-102 374.8 363 60.1
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 1.1e-101 374.4 393 58.0
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 1.4e-101 374.0 401 55.9
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 1.8e-101 373.6 382 55.0
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 1.8e-101 373.6 382 55.0
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 1.8e-101 373.6 417 54.4
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 4.0e-101 372.5 384 58.1
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 4.0e-101 372.5 384 56.0
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 6.8e-101 371.7 384 57.6
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 8.9e-101 371.3 384 57.6
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.2e-100 370.9 399 56.6
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 2.6e-100 369.8 401 55.4
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 5.8e-100 368.6 367 56.1
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 1.3e-99 367.5 388 56.2
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.3e-99 367.5 391 54.0
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 1.7e-99 367.1 365 57.3
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 2.9e-99 366.3 409 57.5
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 2.9e-99 366.3 367 58.6
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.9e-98 363.6 386 54.1
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 2.4e-98 363.2 382 53.7
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 4.1e-98 362.5 382 55.5
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 4.1e-98 362.5 385 57.1
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 5.4e-98 362.1 354 56.5
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 9.2e-98 361.3 382 55.8
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 1.2e-97 360.9 387 59.4
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 1.6e-97 360.5 391 59.3
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 1.6e-97 360.5 384 54.2
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 2.7e-97 359.8 389 54.5
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 7.8e-97 358.2 389 55.5
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 1.0e-96 357.8 389 55.8
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 1.0e-96 357.8 384 58.1
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 2.3e-96 356.7 366 56.8
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 6.6e-96 355.1 364 60.7
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 1.5e-95 354.0 381 57.5
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 3.3e-95 352.8 391 51.9
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 7.3e-95 351.7 401 57.1
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 1.6e-94 350.5 395 56.2
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 2.8e-94 349.7 394 57.4
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 2.8e-94 349.7 369 55.8
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 3.6e-94 349.4 370 52.7
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 8.1e-94 348.2 451 49.4
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 8.1e-94 348.2 380 55.8
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 1.1e-93 347.8 370 54.3
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 1.8e-93 347.1 383 52.0
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 3.1e-93 346.3 365 55.3
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 4.0e-93 345.9 384 53.4
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 8.9e-93 344.7 393 53.4
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 1.2e-92 344.4 384 54.9
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 1.5e-92 344.0 373 52.0
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 2.0e-92 343.6 382 55.0
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 2.6e-92 343.2 354 55.6
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 2.6e-92 343.2 364 56.6
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 2.6e-92 343.2 365 55.6
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 2.6e-92 343.2 367 55.3
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 3.4e-92 342.8 446 48.4
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 4.4e-92 342.4 395 56.7
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 4.4e-92 342.4 462 50.2
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 2.9e-91 339.7 367 56.9
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 4.9e-91 339.0 395 51.4
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 6.4e-91 338.6 397 52.4
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 1.1e-90 337.8 404 50.7
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 1.9e-90 337.0 365 50.4
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 2.1e-89 333.6 370 55.7
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 4.6e-89 332.4 415 49.4
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 1.0e-88 331.3 361 56.0
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 3.9e-88 329.3 362 53.9
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 8.6e-88 328.2 358 51.1
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 2.5e-87 326.6 429 49.2
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 3.3e-87 326.2 368 53.3
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 3.3e-87 326.2 401 54.4
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 3.6e-86 322.8 384 52.3
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 2.4e-85 320.1 366 48.4
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 2.4e-85 320.1 428 46.5
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 1.2e-84 317.8 358 53.6
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 2.4e-82 310.1 321 55.5
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 2.4e-82 310.1 389 53.0
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 7.1e-82 308.5 383 53.0
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 2.1e-81 307.0 322 57.1
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 6.2e-78 295.4 338 56.5
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 1.3e-75 287.7 320 49.4
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 1.7e-75 287.3 440 46.8
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 3.0e-72 276.6 365 45.2
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 1.5e-71 274.2 383 45.4
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 7.4e-63 245.4 162 72.2
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 2.3e-56 223.8 143 76.9
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 1.4e-50 204.5 135 71.9
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 1.0e-48 198.4 353 41.1
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 4.5e-44 183.0 351 34.5
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 2.9e-43 180.3 239 43.9
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 6.5e-43 179.1 297 44.4
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 6.5e-43 179.1 358 33.5
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 6.1e-41 172.6 183 48.6
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 8.8e-40 168.7 110 75.5
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 4.1e-29 133.3 179 44.1
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 2.2e-27 127.5 270 30.4
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 2.0e-23 114.4 205 36.6
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 6.3e-22 109.4 225 36.4
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 2.6e-20 104.0 99 57.6
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 5.0e-19 99.8 64 75.0
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 4.2e-18 96.7 56 83.9
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 5.5e-18 96.3 178 33.7
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 1.2e-15 88.6 90 50.0
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 2.2e-14 84.3 64 68.8
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 3.8e-11 73.6 65 61.5


User provided reference genes

Program Settings