Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g024780 Solanum pennellii HOM05D018239 ORTHO05D010023 1.7e-207 725.7 357 100.0
Solyc11g065010.1 Solanum lycopersicum HOM05D018239 ORTHO05D010023 6.4e-194 680.6 357 95.0
PGSC0003DMG400009447 Solanum tuberosum HOM05D018239 ORTHO05D010023 1.2e-187 659.8 367 91.3
CAN.G468.8 Capsicum annuum HOM05D018239 ORTHO05D010023 9.9e-155 550.4 371 77.6
Nitab4.5_0007012g0030 Nicotiana tabacum HOM05D018239 ORTHO05D010023 1.3e-146 523.5 367 75.7
Peaxi162Scf00004g00424 Petunia axillaris HOM05D018239 ORTHO05D010023 3.3e-142 508.8 365 74.5
Nitab4.5_0006764g0040 Nicotiana tabacum HOM05D018239 ORTHO05D010023 8.5e-122 441.0 360 68.3
Dinv04578 Davidia involucrata HOM05D002733 ORTHO05D010023 9.9e-46 188.3 398 38.4
MSTRG.18469 Avicennia marina HOM05D002733 ORTHO05D010023 4.9e-45 186.0 390 38.7
Oeu025912.1 Olea europaea HOM05D002733 ORTHO05D010023 4.9e-45 186.0 389 37.3
Migut.D00675 Erythranthe guttata HOM05D002733 ORTHO05D010023 1.9e-44 184.1 356 38.5
Dinv36151 Davidia involucrata HOM05D002733 ORTHO05D010023 2.7e-43 180.3 334 38.9
Hma1.2p1_0460F.1_g157570 Hydrangea macrophylla HOM05D002733 ORTHO05D010023 3.5e-43 179.9 392 37.0
DCAR_029984 Daucus carota HOM05D002733 ORTHO05D010023 6.9e-39 165.6 397 35.0
Lsat_1_v5_gn_2_32340 Lactuca sativa HOM05D002733 ORTHO05D010023 1.6e-32 144.4 366 32.5
ECA238G3721 Erigeron canadensis HOM05D002733 ORTHO05D010023 9.9e-30 135.2 382 33.8
Thecc.09G246300 Theobroma cacao HOM05D002733 ORTHO05D010023 4.6e-27 126.3 400 30.5
TAR369G1143 Trochodendron aralioides HOM05D002733 ORTHO05D010023 1.8e-26 124.4 376 31.6
CiPaw.13G148700 Carya illinoinensis HOM05D002733 ORTHO05D010023 9.0e-23 112.1 407 30.2
Eucgr.J00677 Eucalyptus grandis HOM05D002733 ORTHO05D010023 3.4e-22 110.2 403 32.0
MD03G1164300 Malus domestica HOM05D002733 ORTHO05D010023 4.9e-21 106.3 394 28.4
Cfa009898 Carpinus fangiana HOM05D002733 ORTHO05D010023 6.5e-21 105.9 390 29.7
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 6.5e-21 105.9 377 28.6
QL01p016685 Quercus lobata HOM05D002733 ORTHO05D010023 2.7e-19 100.5 397 29.2
Dinv36152 Davidia involucrata HOM05D000362 ORTHO05D000325 1.0e-18 98.6 180 40.6
Lsat_1_v5_gn_2_32520 Lactuca sativa HOM05D002733 ORTHO05D010023 1.0e-18 98.6 340 30.0
Glyma.14G036400 Glycine max HOM05D002733 ORTHO05D010023 5.1e-18 96.3 380 28.7
Gohir.D07G125500 Gossypium hirsutum HOM05D002733 ORTHO05D010023 6.7e-18 95.9 372 30.4
Psat0s1289g0080 Pisum sativum HOM05D002733 ORTHO05D010023 6.7e-18 95.9 385 29.1
Rhsim13G0206300 Rhododendron simsii HOM05D002733 ORTHO05D010023 1.5e-17 94.7 343 31.8
Gohir.A07G121200 Gossypium hirsutum HOM05D002733 ORTHO05D010023 2.5e-17 94.0 372 29.6
Gorai.001G135300 Gossypium raimondii HOM05D002733 ORTHO05D010023 2.5e-17 94.0 372 29.8
Glyma.02G278200 Glycine max HOM05D002733 ORTHO05D010023 3.3e-17 93.6 334 30.2
MD00G1045800 Malus domestica HOM05D002733 ORTHO05D010023 5.7e-17 92.8 397 28.0
Potri.001G274000 Populus trichocarpa HOM05D002733 ORTHO05D010023 5.7e-17 92.8 364 29.1
LjContig00564g0023278 Lotus japonicus HOM05D002733 ORTHO05D010023 1.3e-16 91.7 390 27.9
Actinidia06978 Actinidia chinensis HOM05D002733 ORTHO05D010023 2.8e-16 90.5 196 37.8
Ca_06190_v3 Cicer arietinum L. HOM05D002733 ORTHO05D010023 1.4e-15 88.2 349 28.4
Prupe.4G260600 Prunus persica HOM05D002733 ORTHO05D010023 1.4e-15 88.2 407 28.0
TPR.G16419 Trifolium pratense HOM05D002733 ORTHO05D010023 2.4e-15 87.4 378 29.9
Manes.05G200100 Manihot esculenta HOM05D002733 ORTHO05D010023 3.1e-15 87.0 404 28.7
COL.COLO4_02755 Corchorus olitorius HOM05D002733 ORTHO05D010023 4.1e-15 86.7 379 27.2
Manes.02G136900 Manihot esculenta HOM05D002733 ORTHO05D010023 9.0e-15 85.5 417 25.4
SGA_v2.0_scaffold29G12225 Striga asiatica HOM05D002733 ORTHO05D010023 1.2e-14 85.1 329 31.6
Medtr5g089100 Medicago truncatula HOM05D002733 ORTHO05D010023 1.5e-14 84.7 387 28.9
TAR633G0275 Trochodendron aralioides HOM05D002733 ORTHO05D010023 3.4e-14 83.6 163 39.3
Atru.chr3.3004 Acer truncatum HOM05D002733 ORTHO05D010023 1.3e-13 81.6 387 27.6
Sabra16G0168800 Salix brachista HOM05D002733 ORTHO05D010023 1.3e-13 81.6 395 26.8
Aqoxy2G00438 Aquilegia oxysepala HOM05D002733 ORTHO05D010023 1.7e-13 81.3 389 26.2
arahy.Tifrunner.gnm1.ann1.MI3W0U Arachis hypogaea HOM05D002733 ORTHO05D010023 1.7e-13 81.3 213 37.6
arahy.Tifrunner.gnm1.ann1.88337C Arachis hypogaea HOM05D002733 ORTHO05D010023 2.9e-13 80.5 213 37.1
Potri.009G068200 Populus trichocarpa HOM05D002733 ORTHO05D010023 2.9e-13 80.5 260 32.3
Phvul.008G202700 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 5.0e-13 79.7 202 37.1
Ciclev10017459m.g Citrus clementina HOM05D002733 ORTHO05D010023 1.1e-12 78.6 178 36.0
ClCG02G022730 Citrullus lanatus HOM05D002733 ORTHO05D010023 1.4e-12 78.2 221 34.4
Lalb_Chr10g0106141 Lupinus albus HOM05D002733 ORTHO05D010023 1.4e-12 78.2 359 27.6
MBI13_g09212_MAGBIO Magnolia biondii HOM05D002733 ORTHO05D010023 5.5e-12 76.3 378 27.8
PGR102G0853 Punica granatum HOM05D002733 ORTHO05D010023 1.2e-11 75.1 299 31.4
Phvul.008G165900 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 1.6e-11 74.7 198 35.9
AUR62000212 Chenopodium quinoa HOM05D002733 ORTHO05D010023 2.7e-11 73.9 232 31.0
CsaV3_6G038850 Cucumis sativus L. HOM05D002733 ORTHO05D010023 4.6e-11 73.2 227 33.9
RcHm_v2.0_Chr6g0258931 Rosa chinensis HOM05D002733 ORTHO05D010023 4.6e-11 73.2 191 35.6
HanXRQChr03g0090311 Helianthus annuus HOM05D002733 ORTHO05D010023 6.1e-11 72.8 370 26.5
FvH4_2g06740 Fragaria vesca HOM05D002733 ORTHO05D010023 7.9e-11 72.4 193 34.7
CANSAT54G1196 Cannabis sativa HOM05D002733 ORTHO05D010023 1.3e-10 71.6 372 28.5
FAN15G1799 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.3e-10 71.6 193 35.2
FAN24G3374 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.3e-10 71.6 193 34.7
MELO3C014550.2 Cucumis melo HOM05D002733 ORTHO05D010023 2.3e-10 70.9 226 33.2
FAN20G0750 Fragaria x ananassa HOM05D002733 ORTHO05D010023 2.3e-10 70.9 254 31.5
Lsat_1_v5_gn_3_109980 Lactuca sativa HOM05D002733 ORTHO05D010023 8.8e-10 68.9 193 32.1
TWI79G0642 Tripterygium wilfordii HOM05D002733 ORTHO05D010023 1.5e-09 68.2 305 28.2
VMungo0647G1446 Vigna mungo HOM05D002733 ORTHO05D010023 1.5e-09 68.2 149 36.2
Sed0027264 Sechium edule HOM05D002733 ORTHO05D010023 2.5e-09 67.4 201 30.3
AUR62006558 Chenopodium quinoa HOM05D002733 ORTHO05D010023 3.3e-09 67.0 192 32.8
Nitab4.5_0001413g0010 Nicotiana tabacum HOM05D001841 ORTHO05D001767 3.3e-09 67.0 199 31.7
Cpa.g.sc376.7 Carica papaya HOM05D001841 ORTHO05D001767 4.3e-09 66.6 251 28.7
PGR119G1676 Punica granatum HOM05D002733 ORTHO05D010023 9.7e-09 65.5 282 30.1
ATR0307G041 Amborella trichopoda HOM05D002733 ORTHO05D010023 1.3e-08 65.1 201 29.9
FAN27G2498 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.7e-08 64.7 187 33.7
Peaxi162Scf00684g00566 Petunia axillaris HOM05D001841 ORTHO05D001767 1.7e-08 64.7 209 30.1
Nn5g30193 Nelumbo nucifera HOM05D001841 ORTHO05D001767 4.8e-08 63.2 223 30.9
Ah.06g194720 Amaranthus hybridus HOM05D002733 ORTHO05D010023 6.3e-08 62.8 201 31.8
Nitab4.5_0000736g0050 Nicotiana tabacum HOM05D001841 ORTHO05D001767 6.3e-08 62.8 300 27.3
TAR381G0762 Trochodendron aralioides HOM05D001841 ORTHO05D001767 6.3e-08 62.8 299 26.4
Sc16g0010940 Simmondsia chinensis HOM05D002733 ORTHO05D010023 8.2e-08 62.4 257 29.6
TAR625G0113 Trochodendron aralioides HOM05D001841 ORTHO05D001767 1.1e-07 62.0 110 37.3
vmacro19487 Vaccinium macrocarpon HOM05D001841 ORTHO05D001767 1.1e-07 62.0 209 32.1
MSTRG.16762 Avicennia marina HOM05D001841 ORTHO05D001767 1.4e-07 61.6 216 31.9
Thecc.08G013800 Theobroma cacao HOM05D001841 ORTHO05D001767 1.8e-07 61.2 276 26.4
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 2.4e-07 60.8 191 31.4
BcaB06g27216 Brassica carinata HOM05D001841 ORTHO05D001767 4.1e-07 60.1 302 27.8
unitig_37.g12810 Utricularia gibba HOM05D001841 ORTHO05D001767 5.3e-07 59.7 190 31.6
HPP92_022826 Vanilla planifolia HOM05D002733 ORTHO05D010023 5.3e-07 59.7 166 30.7
AL4G19390 Arabidopsis lyrata HOM05D001841 ORTHO05D001767 6.9e-07 59.3 238 29.4
Carub.0004s0670 Capsella rubella HOM05D001841 ORTHO05D001767 6.9e-07 59.3 244 29.5
CARHR120050 Cardamine hirsuta HOM05D001841 ORTHO05D001767 9.1e-07 58.9 203 31.5
Oeu007260.1 Olea europaea HOM05D001841 ORTHO05D001767 9.1e-07 58.9 201 31.3
PGSC0003DMG400018102 Solanum tuberosum HOM05D001841 ORTHO05D001767 9.1e-07 58.9 169 30.8
Potri.014G034900 Populus trichocarpa HOM05D001841 ORTHO05D001767 1.2e-06 58.5 255 25.9
Solyc03g112700.1 Solanum lycopersicum HOM05D001841 ORTHO05D001767 1.2e-06 58.5 169 30.8
BraA03t11907Z Brassica rapa HOM05D001841 ORTHO05D001767 2.0e-06 57.8 194 32.0
Sabra14G0024800 Salix brachista HOM05D001841 ORTHO05D001767 2.0e-06 57.8 203 29.6
A03p26960 Brassica napus HOM05D001841 ORTHO05D001767 2.6e-06 57.4 194 32.0
Hma1.2p1_0370F.1_g138000 Hydrangea macrophylla HOM05D001841 ORTHO05D001767 2.6e-06 57.4 214 29.4
Sopen03g031780 Solanum pennellii HOM05D001841 ORTHO05D001767 2.6e-06 57.4 169 29.6
BolC3t15576H Brassica oleracea HOM05D001841 ORTHO05D001767 3.4e-06 57.0 198 29.8
CDE03G0088 Ceratophyllum demersum HOM05D000370 ORTHO05D001767 3.4e-06 57.0 273 26.4
AT2G26530 Arabidopsis thaliana HOM05D001841 ORTHO05D001767 7.7e-06 55.8 246 29.7
vmacro04468 Vaccinium macrocarpon HOM05D001841 ORTHO05D001767 7.7e-06 55.8 220 27.3


User provided reference genes

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