Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g024630 Solanum pennellii HOM05D003843 ORTHO05D004646 3.5e-155 551.6 277 100.0
Solyc11g062430.2 Solanum lycopersicum HOM05D003843 ORTHO05D004646 4.3e-129 464.9 235 99.6
PGSC0003DMG400032509 Solanum tuberosum HOM05D003843 ORTHO05D004646 4.0e-127 458.4 235 98.3
Nitab4.5_0000492g0220 Nicotiana tabacum HOM05D003843 ORTHO05D004646 5.7e-126 454.5 235 96.6
Nitab4.5_0008505g0020 Nicotiana tabacum HOM05D003843 ORTHO05D004646 5.7e-126 454.5 235 96.6
Migut.N02389 Erythranthe guttata HOM05D003843 ORTHO05D004646 1.1e-124 450.3 235 95.3
SGA_v2.0_scaffold3G01428 Striga asiatica HOM05D003843 ORTHO05D004646 1.8e-124 449.5 235 94.9
Cc00_g24230 Coffea canephora HOM05D003843 ORTHO05D004646 4.1e-124 448.4 235 94.0
Peaxi162Scf00032g02619 Petunia axillaris HOM05D003843 ORTHO05D004646 9.2e-124 447.2 235 94.5
SGA_v2.0_scaffold26G11383 Striga asiatica HOM05D003843 ORTHO05D004646 1.2e-123 446.8 235 94.0
Rhsim13G0201300 Rhododendron simsii HOM05D003843 ORTHO05D004646 2.0e-123 446.0 235 94.5
Os01g0279200 Oryza sativa ssp. japonica HOM05D003843 ORTHO05D004646 2.7e-123 445.7 235 93.6
MSTRG.21332 Avicennia marina HOM05D003843 ORTHO05D004646 3.5e-123 445.3 235 94.0
Peaxi162Scf00791g00019 Petunia axillaris HOM05D003843 ORTHO05D004646 3.5e-123 445.3 232 95.7
CSS0016417 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 7.8e-123 444.1 235 94.0
CSS0043612 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 7.8e-123 444.1 235 94.0
CAN.G96.3 Capsicum annuum HOM05D003843 ORTHO05D004646 7.8e-123 444.1 232 95.7
Ciclev10015276m.g Citrus clementina HOM05D003843 ORTHO05D004646 1.7e-122 443.0 235 93.2
PSO339G6626 Papaver somniferum HOM05D003843 ORTHO05D004646 1.7e-122 443.0 235 92.3
PSO384G3915 Papaver somniferum HOM05D003843 ORTHO05D004646 1.7e-122 443.0 235 92.3
THA.LOC104800481 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 1.7e-122 443.0 235 93.2
TAR623G0430 Trochodendron aralioides HOM05D003843 ORTHO05D004646 2.3e-122 442.6 235 93.6
Zm00001eb128990 Zea mays HOM05D003843 ORTHO05D004646 2.3e-122 442.6 235 93.6
Cpa.g.sc84.81 Carica papaya HOM05D003843 ORTHO05D004646 5.0e-122 441.4 235 92.8
Nn7g37169 Nelumbo nucifera HOM05D003843 ORTHO05D004646 6.6e-122 441.0 235 92.8
Atru.chr3.2831 Acer truncatum HOM05D003843 ORTHO05D004646 8.6e-122 440.7 235 92.8
HanXRQChr04g0125421 Helianthus annuus HOM05D003843 ORTHO05D004646 8.6e-122 440.7 235 92.8
Manes.01G175000 Manihot esculenta HOM05D003843 ORTHO05D004646 8.6e-122 440.7 235 92.8
Potri.009G020900 Populus trichocarpa HOM05D003843 ORTHO05D004646 8.6e-122 440.7 235 92.8
Sc20g0005970 Simmondsia chinensis HOM05D003843 ORTHO05D004646 8.6e-122 440.7 235 91.9
EL10Ac7g16998 Beta vulgaris HOM05D003843 ORTHO05D004646 1.1e-121 440.3 235 92.8
Gohir.A07G118200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 1.1e-121 440.3 235 92.3
Gohir.D07G122600 Gossypium hirsutum HOM05D003843 ORTHO05D004646 1.1e-121 440.3 235 92.3
MD11G1176300 Malus domestica HOM05D003843 ORTHO05D004646 1.1e-121 440.3 235 92.8
Actinidia07000 Actinidia chinensis HOM05D003843 ORTHO05D004646 1.5e-121 439.9 235 92.8
ECA236G0656 Erigeron canadensis HOM05D003843 ORTHO05D004646 1.9e-121 439.5 235 92.3
Solyc01g008840.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 1.9e-121 439.5 235 92.8
Thecc.09G256000 Theobroma cacao HOM05D003843 ORTHO05D004646 1.9e-121 439.5 235 92.3
Gohir.A09G107400 Gossypium hirsutum HOM05D003843 ORTHO05D004646 2.5e-121 439.1 235 92.8
Gohir.D09G104200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 2.5e-121 439.1 235 92.8
Gorai.006G121500 Gossypium raimondii HOM05D003843 ORTHO05D004646 2.5e-121 439.1 235 92.8
Sabra16G0132300 Salix brachista HOM05D003843 ORTHO05D004646 2.5e-121 439.1 235 92.8
PGSC0003DMG400022712 Solanum tuberosum HOM05D003843 ORTHO05D004646 2.5e-121 439.1 235 92.8
Eucgr.B03772 Eucalyptus grandis HOM05D003843 ORTHO05D004646 4.3e-121 438.3 235 91.9
Gorai.001G132400 Gossypium raimondii HOM05D003843 ORTHO05D004646 4.3e-121 438.3 235 91.9
TWI75G1397 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 4.3e-121 438.3 235 92.3
Lj2C938G6 Lonicera japonica HOM05D003843 ORTHO05D004646 5.6e-121 438.0 235 91.9
Potri.001G222700 Populus trichocarpa HOM05D003843 ORTHO05D004646 5.6e-121 438.0 235 91.9
Sabra09G0011400 Salix brachista HOM05D003843 ORTHO05D004646 7.3e-121 437.6 235 91.9
Nitab4.5_0000718g0260 Nicotiana tabacum HOM05D003843 ORTHO05D004646 9.5e-121 437.2 233 94.0
MD00G1108200 Malus domestica HOM05D003843 ORTHO05D004646 1.2e-120 436.8 235 91.9
ClCG02G024160 Citrullus lanatus HOM05D003843 ORTHO05D004646 1.6e-120 436.4 235 91.9
MELO3C014699.2 Cucumis melo HOM05D003843 ORTHO05D004646 1.6e-120 436.4 235 91.9
RcHm_v2.0_Chr5g0050051 Rosa chinensis HOM05D003843 ORTHO05D004646 1.6e-120 436.4 235 91.5
AUR62041414 Chenopodium quinoa HOM05D003843 ORTHO05D004646 2.1e-120 436.0 235 91.9
PGR102G1130 Punica granatum HOM05D003843 ORTHO05D004646 2.8e-120 435.6 235 91.5
HanXRQChr06g0178281 Helianthus annuus HOM05D003843 ORTHO05D004646 3.6e-120 435.3 235 91.9
AUR62033585 Chenopodium quinoa HOM05D003843 ORTHO05D004646 4.7e-120 434.9 233 92.3
Manes.02G133500 Manihot esculenta HOM05D003843 ORTHO05D004646 4.7e-120 434.9 235 91.1
THA.LOC104826467 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 4.7e-120 434.9 235 90.6
ATR1096G029 Amborella trichopoda HOM05D003843 ORTHO05D004646 8.0e-120 434.1 229 93.0
GSVIVG01025835001 Vitis vinifera HOM05D003843 ORTHO05D004646 1.0e-119 433.7 232 92.7
Sed0007264 Sechium edule HOM05D003843 ORTHO05D004646 1.8e-119 433.0 235 91.1
Aqoxy2G00042 Aquilegia oxysepala HOM05D003843 ORTHO05D004646 3.1e-119 432.2 235 90.2
Duzib168G0367 Durio zibethinus HOM05D003843 ORTHO05D004646 3.1e-119 432.2 235 91.1
CDE07G0877 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 4.0e-119 431.8 235 90.6
CANSAT64G0238 Cannabis sativa HOM05D003843 ORTHO05D004646 6.8e-119 431.0 232 91.4
FvH4_4g27570 Fragaria vesca HOM05D003843 ORTHO05D004646 8.9e-119 430.6 235 89.8
FAN07G2602 Fragaria x ananassa HOM05D003843 ORTHO05D004646 8.9e-119 430.6 235 89.8
FAN12G3037 Fragaria x ananassa HOM05D003843 ORTHO05D004646 8.9e-119 430.6 235 89.8
FAN12G3698 Fragaria x ananassa HOM05D003843 ORTHO05D004646 8.9e-119 430.6 235 89.8
Duzib150G0366 Durio zibethinus HOM05D003843 ORTHO05D004646 1.5e-118 429.9 235 91.1
RcHm_v2.0_Chr4g0435421 Rosa chinensis HOM05D003843 ORTHO05D004646 2.6e-118 429.1 235 89.4
PGSC0003DMG400028109 Solanum tuberosum HOM05D003843 ORTHO05D004646 2.6e-118 429.1 235 89.4
CsaV3_4G017290 Cucumis sativus L. HOM05D003843 ORTHO05D004646 4.4e-118 428.3 245 88.2
Prupe.6G156800 Prunus persica HOM05D003843 ORTHO05D004646 4.4e-118 428.3 235 91.5
Aa31LG5G8390 Aethionema arabicum HOM05D003843 ORTHO05D004646 7.5e-118 427.6 232 90.9
DCAR_013515 Daucus carota HOM05D003843 ORTHO05D004646 1.3e-117 426.8 235 89.8
Sopen10g031650 Solanum pennellii HOM05D003843 ORTHO05D004646 1.7e-117 426.4 235 88.5
arahy.Tifrunner.gnm1.ann1.286ZLS Arachis hypogaea HOM05D003843 ORTHO05D004646 2.2e-117 426.0 235 90.2
arahy.Tifrunner.gnm1.ann1.66YQP5 Arachis hypogaea HOM05D003843 ORTHO05D004646 2.2e-117 426.0 235 90.2
Ca_03426_v3 Cicer arietinum L. HOM05D003843 ORTHO05D004646 2.2e-117 426.0 235 90.2
CAN.G128.106 Capsicum annuum HOM05D003843 ORTHO05D004646 2.9e-117 425.6 232 89.7
Phvul.001G102200 Phaseolus vulgaris HOM05D003843 ORTHO05D004646 2.9e-117 425.6 235 90.2
VMungo1383G3260 Vigna mungo HOM05D003843 ORTHO05D004646 2.9e-117 425.6 235 90.2
Lj1g0018589 Lotus japonicus HOM05D003843 ORTHO05D004646 4.9e-117 424.9 235 89.8
Lalb_Chr14g0365261 Lupinus albus HOM05D003843 ORTHO05D004646 4.9e-117 424.9 235 89.8
arahy.Tifrunner.gnm1.ann1.802V4W Arachis hypogaea HOM05D003843 ORTHO05D004646 6.4e-117 424.5 235 89.8
arahy.Tifrunner.gnm1.ann1.CI8U65 Arachis hypogaea HOM05D003843 ORTHO05D004646 6.4e-117 424.5 235 89.8
CARHR119240 Cardamine hirsuta HOM05D003843 ORTHO05D004646 6.4e-117 424.5 235 89.4
Glyma.03G004400 Glycine max HOM05D003843 ORTHO05D004646 8.3e-117 424.1 235 89.8
Lalb_Chr24g0400701 Lupinus albus HOM05D003843 ORTHO05D004646 8.3e-117 424.1 235 89.8
AL4G20470 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 1.1e-116 423.7 235 89.4
Thhalv10001988m.g Eutrema salsugineum HOM05D003843 ORTHO05D004646 1.1e-116 423.7 235 88.9
CAN.G1332.3 Capsicum annuum HOM05D003843 ORTHO05D004646 1.4e-116 423.3 233 90.1
QL07p015316 Quercus lobata HOM05D003843 ORTHO05D004646 1.4e-116 423.3 235 89.4
Hund19273 Selenicereus undatus HOM05D003843 ORTHO05D004646 1.4e-116 423.3 235 88.5
Pp3c9_2060 Physcomitrium patens HOM05D003843 ORTHO05D004646 1.9e-116 422.9 235 87.7
Sp4g08320 Schrenkiella parvula HOM05D003843 ORTHO05D004646 1.9e-116 422.9 235 88.5
AT2G26990 Arabidopsis thaliana HOM05D003843 ORTHO05D004646 2.4e-116 422.5 235 89.4
Medtr7g087530 Medicago truncatula HOM05D003843 ORTHO05D004646 2.4e-116 422.5 235 88.9
QL07p015334 Quercus lobata HOM05D003843 ORTHO05D004646 2.4e-116 422.5 235 89.8
Pp3c17_10150 Physcomitrium patens HOM05D003843 ORTHO05D004646 3.2e-116 422.2 235 87.7
vmacro04105 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 3.2e-116 422.2 243 88.1
DCAR_020626 Daucus carota HOM05D003843 ORTHO05D004646 5.4e-116 421.4 235 88.5
Mapoly0063s0071 Marchantia polymorpha HOM05D003843 ORTHO05D004646 9.2e-116 420.6 232 88.8
BcaB01g03038 Brassica carinata HOM05D003843 ORTHO05D004646 1.2e-115 420.2 235 88.5
CiPaw.09G163100 Carya illinoinensis HOM05D003843 ORTHO05D004646 1.2e-115 420.2 235 88.9
TPR.G23658 Trifolium pratense HOM05D003843 ORTHO05D004646 1.2e-115 420.2 235 88.9
Psat3g083920 Pisum sativum HOM05D003843 ORTHO05D004646 1.6e-115 419.9 235 88.5
BcaC02g10850 Brassica carinata HOM05D003843 ORTHO05D004646 2.0e-115 419.5 235 88.5
C04p24530 Brassica napus HOM05D003843 ORTHO05D004646 2.0e-115 419.5 235 88.5
BcaB02g10062 Brassica carinata HOM05D003843 ORTHO05D004646 7.8e-115 417.5 235 87.7
Glyma.05G079400 Glycine max HOM05D003843 ORTHO05D004646 7.8e-115 417.5 235 87.2
Pp3c15_2200 Physcomitrium patens HOM05D003843 ORTHO05D004646 7.8e-115 417.5 235 87.2
Solyc10g081150.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 1.3e-114 416.8 229 88.6
A07p17930 Brassica napus HOM05D003843 ORTHO05D004646 1.7e-114 416.4 235 88.1
C03p32130 Brassica napus HOM05D003843 ORTHO05D004646 3.0e-114 415.6 235 87.2
Carub.0004s0747 Capsella rubella HOM05D003843 ORTHO05D004646 3.0e-114 415.6 235 87.7
Glyma.19G072400 Glycine max HOM05D003843 ORTHO05D004646 6.6e-114 414.5 235 86.8
Glyma.19G121500 Glycine max HOM05D003843 ORTHO05D004646 1.5e-113 413.3 229 89.5
SMO117G0130 Selaginella moellendorffii HOM05D003843 ORTHO05D004646 1.5e-113 413.3 235 85.5
BraA07t29511Z Brassica rapa HOM05D003843 ORTHO05D004646 2.5e-113 412.5 232 88.4
Sed0025468 Sechium edule HOM05D003843 ORTHO05D004646 2.5e-113 412.5 235 87.2
vmacro14282 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 2.5e-113 412.5 236 88.6
BolC4t23951H Brassica oleracea HOM05D003843 ORTHO05D004646 9.5e-113 410.6 229 88.6
A03p26810 Brassica napus HOM05D003843 ORTHO05D004646 1.6e-112 409.8 232 87.5
BraA03t11892Z Brassica rapa HOM05D003843 ORTHO05D004646 1.6e-112 409.8 232 87.5
AagrBONN_evm.TU.Sc2ySwM_344.3619 Anthoceros agrestis HOM05D003843 ORTHO05D004646 2.1e-112 409.5 235 86.0
MBI19_g17996_MAGBIO Magnolia biondii HOM05D003843 ORTHO05D004646 2.1e-112 409.5 233 88.4
MD03G1163800 Malus domestica HOM05D003843 ORTHO05D004646 3.6e-112 408.7 235 87.2
BolC3t15555H Brassica oleracea HOM05D003843 ORTHO05D004646 1.4e-111 406.8 229 87.3
Nitab4.5_0005212g0010 Nicotiana tabacum HOM05D003843 ORTHO05D004646 4.0e-111 405.2 233 89.7
Haze_20342 Corylus avellana HOM05D003843 ORTHO05D004646 5.2e-111 404.8 270 78.1
SEGI_33472 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 9.8e-110 400.6 233 84.1
CBR_g24102 Chara braunii HOM05D003843 ORTHO05D004646 1.6e-107 393.3 233 84.5
Hma1.2p1_2801F.1_g328800 Hydrangea macrophylla HOM05D003843 ORTHO05D004646 1.0e-106 390.6 205 94.6
HPP92_012450 Vanilla planifolia HOM05D003843 ORTHO05D004646 1.0e-106 390.6 235 83.8
BcaC01g04918 Brassica carinata HOM05D003843 ORTHO05D004646 1.7e-106 389.8 235 83.0
CsaV3_UNG234370 Cucumis sativus L. HOM05D003843 ORTHO05D004646 8.6e-106 387.5 223 87.9
Zm00001eb332660 Zea mays HOM05D003843 ORTHO05D004646 3.1e-103 379.0 210 89.5
Dinv12305 Davidia involucrata HOM05D003843 ORTHO05D004646 5.2e-103 378.3 235 82.6
CARHR063930 Cardamine hirsuta HOM05D003843 ORTHO05D004646 6.8e-103 377.9 237 80.2
CsaV3_4G023170 Cucumis sativus L. HOM05D003843 ORTHO05D004646 2.0e-102 376.3 217 87.6
Sopen01g004350 Solanum pennellii HOM05D003843 ORTHO05D004646 2.0e-102 376.3 200 92.5
Lsat_1_v5_gn_8_85240 Lactuca sativa HOM05D003843 ORTHO05D004646 7.8e-99 364.4 229 82.5
Oeu013457.1 Olea europaea HOM05D003843 ORTHO05D004646 1.3e-98 363.6 229 81.2
Hund04069 Selenicereus undatus HOM05D003843 ORTHO05D004646 6.2e-96 354.8 227 81.9
TWI79G0192 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 1.1e-92 344.0 182 91.2
EL10Ac1g01678 Beta vulgaris HOM05D003843 ORTHO05D004646 6.2e-88 328.2 174 93.1
MCO01G792 Micromonas commoda HOM05D003843 ORTHO05D004646 2.4e-87 326.2 233 68.2
SEGI_33516 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 2.2e-85 319.7 176 88.6
Cre01.g030800 Chlamydomonas reinhardtii HOM05D003843 ORTHO05D004646 6.4e-85 318.2 235 67.2
COL.COLO4_24925 Corchorus olitorius HOM05D003843 ORTHO05D004646 1.4e-84 317.0 203 79.8
PRCOL_00002476 Prasinoderma coloniale HOM05D003843 ORTHO05D004646 5.4e-84 315.1 231 67.5
Haze_26275 Corylus avellana HOM05D003843 ORTHO05D004646 1.2e-78 297.4 234 63.2
Haze_20346 Corylus avellana HOM05D003843 ORTHO05D004646 1.8e-74 283.5 150 93.3
SHI24965 Sapria himalayana HOM05D003843 ORTHO05D004646 3.9e-74 282.3 154 88.3
Rhsim13G0197000 Rhododendron simsii HOM05D003843 ORTHO05D004646 4.2e-68 262.3 273 56.0
Cfa024421 Carpinus fangiana HOM05D003843 ORTHO05D004646 8.2e-64 248.1 212 55.7
CDE04G2865 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 5.0e-61 238.8 127 90.6
VMungo1309G2340 Vigna mungo HOM05D003843 ORTHO05D004646 1.3e-53 214.2 150 76.0
AL8G39810 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 8.8e-50 201.4 237 46.4
BolC3t17208H Brassica oleracea HOM05D003843 ORTHO05D004621 1.5e-33 147.5 178 45.5
SEGI_37910 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 8.2e-32 141.7 78 87.2
C03p49270 Brassica napus HOM05D003871 ORTHO05D004621 1.7e-21 107.5 166 40.4
SHI24968 Sapria himalayana HOM05D003843 ORTHO05D004646 1.2e-14 84.7 49 85.7
ClCG10G014090 Citrullus lanatus HOM05D006109 ORTHO05D007647 7.7e-14 82.0 67 70.1
BcaC01g03723 Brassica carinata HOM05D003843 ORTHO05D091273 6.6e-13 79.0 149 35.6
Lsat_1_v5_gn_4_91020 Lactuca sativa HOM05D000919 ORTHO05D001187 1.5e-09 67.8 55 58.2
CDE04G0576 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 2.0e-09 67.4 36 86.1
BcaB04g18969 Brassica carinata HOM05D003843 ORTHO05D092575 1.7e-08 64.3 50 56.0


User provided reference genes

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