Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 7.6e-138 493.8 246 100.0
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 9.9e-138 493.4 246 99.6
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 4.6e-135 484.6 246 98.0
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.1e-111 406.0 241 83.4
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 4.5e-106 388.3 215 87.4
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 3.3e-101 372.1 245 79.6
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.7e-100 369.8 247 74.9
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 4.1e-99 365.2 246 74.8
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 5.1e-94 348.2 246 72.4
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 3.7e-92 342.0 247 70.0
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 4.8e-92 341.7 247 71.7
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 8.0e-87 324.3 247 68.0
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 1.0e-86 323.9 243 69.1
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.7e-84 316.6 247 68.0
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 2.2e-84 316.2 247 68.0
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 3.7e-84 315.5 256 64.5
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 9.1e-83 310.8 247 66.8
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 5.9e-82 308.1 243 65.4
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 1.7e-81 306.6 247 66.0
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 5.0e-81 305.1 244 66.4
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 1.1e-80 303.9 246 64.2
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 2.5e-80 302.8 252 65.5
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 3.2e-80 302.4 251 64.1
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 7.2e-80 301.2 246 64.2
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 2.7e-79 299.3 256 63.3
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 1.0e-78 297.4 215 71.6
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 3.0e-78 295.8 276 59.1
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 3.0e-78 295.8 264 62.9
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 4.0e-78 295.4 248 63.3
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 8.8e-78 294.3 249 63.1
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 2.6e-77 292.7 251 62.2
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 9.8e-77 290.8 225 68.0
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 2.8e-76 289.3 249 61.8
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 4.8e-76 288.5 269 57.2
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 6.3e-76 288.1 249 63.5
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 6.3e-76 288.1 231 66.7
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 1.1e-75 287.3 251 63.3
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 2.4e-75 286.2 249 63.9
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 3.1e-75 285.8 224 68.3
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 3.1e-75 285.8 237 64.6
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 7.0e-75 284.6 224 67.9
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.2e-74 283.9 224 67.9
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 1.6e-74 283.5 242 66.5
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 2.7e-74 282.7 211 69.2
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 2.7e-74 282.7 232 64.7
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 1.7e-73 280.0 253 61.7
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 3.8e-73 278.9 271 59.0
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 5.0e-73 278.5 213 69.5
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.5e-72 276.9 246 58.5
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.9e-72 276.6 264 55.7
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 3.2e-72 275.8 276 54.0
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 4.2e-72 275.4 246 62.2
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 4.2e-72 275.4 217 66.4
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.5e-72 275.0 245 62.0
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 9.4e-72 274.2 239 61.1
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.2e-71 273.9 251 61.4
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 2.1e-71 273.1 251 61.0
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 2.1e-71 273.1 224 64.3
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 6.1e-71 271.6 243 58.4
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 1.4e-70 270.4 269 55.0
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.8e-70 270.0 235 61.7
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 5.2e-70 268.5 250 58.4
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 5.2e-70 268.5 252 61.1
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 6.8e-70 268.1 304 51.6
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.6e-69 266.2 234 59.4
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 3.4e-69 265.8 185 72.4
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 2.2e-68 263.1 218 64.2
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 2.2e-68 263.1 210 63.8
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.4e-67 260.4 253 58.5
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 2.0e-66 256.5 176 73.9
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.0e-66 256.5 252 55.2
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 2.7e-66 256.1 244 59.4
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 5.9e-66 255.0 206 66.0
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.9e-66 255.0 252 56.7
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 5.9e-66 255.0 255 53.3
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 1.0e-65 254.2 222 63.1
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.7e-65 253.4 252 56.3
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 2.3e-65 253.1 252 56.3
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 2.3e-65 253.1 236 59.7
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 3.8e-65 252.3 230 58.7
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 2.5e-64 249.6 247 55.1
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 2.5e-64 249.6 247 55.1
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 9.5e-64 247.7 176 71.6
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 1.6e-63 246.9 253 55.7
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 2.1e-63 246.5 206 63.6
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 6.1e-63 245.0 256 54.3
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 6.1e-63 245.0 257 56.4
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 8.0e-63 244.6 293 50.5
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.3e-62 243.0 254 52.8
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 8.9e-62 241.1 205 62.4
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 2.6e-61 239.6 257 55.6
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.2e-60 236.5 230 59.1
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 2.9e-60 236.1 224 57.1
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 4.9e-60 235.3 237 55.3
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 4.9e-60 235.3 222 56.8
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 8.3e-60 234.6 222 59.0
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 9.2e-59 231.1 234 53.8
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 1.6e-58 230.3 260 52.7
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 7.8e-58 228.0 210 61.4
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 1.0e-57 227.6 176 66.5
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 1.3e-57 227.3 254 52.8
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 2.3e-57 226.5 230 55.2
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 5.0e-57 225.3 258 52.7
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 8.6e-57 224.6 258 52.3
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 1.1e-56 224.2 258 52.3
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 1.5e-56 223.8 258 53.1
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 1.5e-56 223.8 258 53.1
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.9e-56 223.4 220 56.8
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 5.6e-56 221.9 205 56.6
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 1.6e-55 220.3 248 52.0
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 8.0e-55 218.0 178 66.9
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 7.5e-53 211.5 258 49.6
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.3e-52 210.7 265 48.7
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 3.7e-52 209.1 257 49.4
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 3.7e-52 209.1 233 53.6
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 6.4e-52 208.4 255 49.4
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 8.3e-52 208.0 236 50.4
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 1.1e-51 207.6 191 58.1
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 5.4e-51 205.3 154 63.6
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 2.0e-50 203.4 237 49.8
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 2.7e-50 203.0 257 49.0
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 6.0e-50 201.8 199 57.8
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 2.3e-49 199.9 230 49.6
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 4.3e-48 195.7 213 49.8
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 2.1e-47 193.4 165 58.8
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 6.2e-47 191.8 149 64.4
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 6.2e-47 191.8 198 50.5
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 6.2e-47 191.8 180 58.9
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.8e-46 190.3 201 53.7
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 9.8e-45 184.5 204 53.9
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 1.1e-43 181.0 144 60.4
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 1.9e-43 180.3 190 50.0
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 2.4e-43 179.9 117 70.1
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 7.8e-42 174.9 138 68.1
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 1.3e-41 174.1 199 50.8
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.3e-41 173.3 178 52.8
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 3.6e-39 166.0 259 43.2
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 1.5e-37 160.6 139 65.5
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 7.6e-37 158.3 139 65.5
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.2e-35 152.9 139 64.7
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 7.8e-34 148.3 159 55.3
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 1.3e-33 147.5 179 45.3
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.3e-33 146.7 142 52.1
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 6.6e-33 145.2 104 68.3
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.2e-31 141.0 138 52.9
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 6.2e-31 138.7 130 60.8
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 5.2e-30 135.6 132 59.8
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 1.7e-28 130.6 153 51.0
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 1.4e-27 127.5 148 56.1
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 1.9e-27 127.1 97 62.9
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 2.8e-23 113.2 232 37.9
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 6.2e-23 112.1 159 41.5
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 8.1e-23 111.7 63 73.0
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 2.0e-21 107.1 92 50.0
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 3.4e-21 106.3 150 51.3
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 1.7e-20 104.0 117 41.9
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 4.9e-20 102.4 246 35.4
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.2e-18 97.8 102 54.9
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 1.3e-17 94.4 102 52.0
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 5.1e-17 92.4 68 66.2
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 5.1e-17 92.4 98 60.2
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 6.7e-17 92.0 136 48.5
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 2.4e-14 83.6 87 55.2
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 5.8e-13 79.0 109 42.2
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.3e-12 77.8 53 60.4
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 4.2e-11 72.8 70 51.4
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 4.2e-11 72.8 82 51.2
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 2.7e-10 70.1 68 52.9
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.5e-08 64.3 50 56.0
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 2.8e-07 60.1 59 42.4
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 3.7e-07 59.7 89 42.7
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 6.2e-07 58.9 89 41.6
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.1e-06 58.2 70 44.3
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 6.9e-06 55.5 59 37.3
MBI14_g20318_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D017722 6.9e-06 55.5 34 64.7


User provided reference genes

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