Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 7.4e-72 273.9 147 100.0
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 5.5e-67 257.7 147 94.6
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 1.2e-66 256.5 147 93.9
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 9.0e-62 240.4 151 89.4
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 2.5e-51 205.7 149 81.2
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 2.8e-47 192.2 146 77.4
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 1.4e-43 179.9 149 68.5
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 2.3e-41 172.6 145 66.2
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 5.2e-41 171.4 145 63.4
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 5.2e-41 171.4 145 63.4
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 6.7e-41 171.0 145 64.1
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 1.1e-40 170.2 144 65.3
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 1.7e-39 166.4 150 64.7
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 1.7e-39 166.4 145 62.8
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 3.7e-39 165.2 147 61.2
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 3.7e-39 165.2 147 63.9
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 6.3e-39 164.5 147 65.3
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 4.1e-38 161.8 146 64.4
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 4.1e-38 161.8 152 61.2
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 5.3e-38 161.4 144 63.2
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 7.0e-38 161.0 149 61.7
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 7.0e-38 161.0 149 61.7
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 9.1e-38 160.6 153 58.2
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 1.6e-37 159.8 148 62.2
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 5.9e-37 157.9 137 70.1
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 7.7e-37 157.5 143 58.7
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 1.3e-36 156.8 148 58.8
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 1.7e-36 156.4 154 59.1
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 2.2e-36 156.0 148 62.2
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 2.9e-36 155.6 144 62.5
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 2.9e-36 155.6 142 59.2
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 5.0e-36 154.8 149 61.1
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 6.5e-36 154.5 143 60.1
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 8.5e-36 154.1 142 59.2
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 8.5e-36 154.1 140 65.7
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 8.5e-36 154.1 144 62.5
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 1.1e-35 153.7 158 55.1
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 3.2e-35 152.1 147 57.1
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 4.2e-35 151.8 145 59.3
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 4.2e-35 151.8 143 62.2
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 5.5e-35 151.4 147 61.9
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 5.5e-35 151.4 150 58.7
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 7.2e-35 151.0 158 58.2
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 9.4e-35 150.6 139 60.4
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 9.4e-35 150.6 142 64.1
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 1.2e-34 150.2 149 60.4
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 1.2e-34 150.2 142 62.7
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 2.1e-34 149.4 142 62.0
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 3.6e-34 148.7 146 58.9
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 8.0e-34 147.5 139 59.7
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.0e-33 147.1 139 59.7
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 1.8e-33 146.4 144 59.7
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 1.8e-33 146.4 150 58.7
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 4.0e-33 145.2 143 58.7
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 5.2e-33 144.8 147 58.5
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 5.2e-33 144.8 143 56.6
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 6.7e-33 144.4 156 53.8
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 8.8e-33 144.1 135 59.3
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 1.2e-32 143.7 143 59.4
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 1.5e-32 143.3 145 57.2
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 2.0e-32 142.9 143 57.3
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 2.0e-32 142.9 150 56.0
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 2.6e-32 142.5 157 54.1
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 3.3e-32 142.1 157 57.3
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 3.3e-32 142.1 142 59.9
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 7.5e-32 141.0 145 57.9
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 7.5e-32 141.0 145 57.9
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 9.7e-32 140.6 142 57.0
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 1.3e-31 140.2 144 54.2
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 1.7e-31 139.8 144 56.2
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 1.7e-31 139.8 147 56.5
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 2.2e-31 139.4 145 57.2
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 2.8e-31 139.0 145 57.9
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 4.8e-31 138.3 148 56.1
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 6.3e-31 137.9 147 55.1
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 8.2e-31 137.5 145 56.6
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 1.4e-30 136.7 145 53.1
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 1.8e-30 136.3 146 55.5
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.8e-30 136.3 148 57.4
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 3.1e-30 135.6 151 53.0
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 5.3e-30 134.8 144 58.3
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 7.0e-30 134.4 143 60.1
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 1.2e-29 133.7 132 59.1
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 1.6e-29 133.3 145 53.8
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 2.0e-29 132.9 145 51.0
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 3.5e-29 132.1 145 53.8
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 3.5e-29 132.1 146 50.7
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 5.9e-29 131.3 145 54.5
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 5.9e-29 131.3 147 52.4
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 7.7e-29 131.0 145 53.8
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 7.7e-29 131.0 145 52.4
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 1.0e-28 130.6 131 55.7
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 1.0e-28 130.6 134 61.2
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 1.0e-28 130.6 126 63.5
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 1.3e-28 130.2 131 57.3
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 8.5e-28 127.5 149 51.0
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 9.4e-27 124.0 143 51.7
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 2.7e-26 122.5 138 52.9
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 4.7e-26 121.7 142 52.1
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 5.2e-25 118.2 145 47.6
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 5.2e-25 118.2 142 50.0
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 8.8e-25 117.5 142 51.4
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 8.8e-25 117.5 137 53.3
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 1.5e-24 116.7 142 47.2
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 2.0e-24 116.3 143 48.3
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 3.4e-24 115.5 147 49.0
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 5.7e-24 114.8 142 47.9
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 5.7e-24 114.8 142 47.9
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 5.7e-24 114.8 142 47.9
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 5.7e-24 114.8 142 47.9
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 1.7e-23 113.2 148 47.3
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 2.8e-23 112.5 147 45.6
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 1.2e-21 107.1 141 44.7
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 1.7e-20 103.2 150 43.3
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 3.8e-20 102.1 142 42.3
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 5.0e-20 101.7 148 43.9
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 9.5e-19 97.4 141 44.0
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 3.6e-18 95.5 119 50.4
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 3.6e-18 95.5 120 50.8
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 4.7e-18 95.1 66 74.2
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 3.4e-16 89.0 146 39.7
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 1.4e-14 83.6 71 63.4
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 1.8e-14 83.2 123 44.7
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 4.1e-14 82.0 67 64.2
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 4.5e-13 78.6 143 39.9
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 7.8e-13 77.8 106 41.5
TAR624G0128 Trochodendron aralioides HOM05D006047 ORTHO05D007353 3.1e-09 65.9 63 50.8
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 2.0e-08 63.2 52 55.8
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 1.4e-06 57.0 141 31.9


User provided reference genes

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