Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 3510.7 1824 100.0
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 3264.2 1824 92.7
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 3067.7 1826 88.1
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 2585.4 1377 97.7
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2550.4 1817 71.8
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2544.6 1819 70.3
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2512.6 1824 69.2
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2470.3 1848 68.7
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2466.0 1820 68.5
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2454.1 1806 69.2
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2433.7 1825 68.4
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2425.6 1818 67.8
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2416.7 1824 67.9
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2413.6 1806 67.6
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2409.8 1823 67.5
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2408.3 1818 67.1
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2407.1 1830 67.1
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2404.8 1822 67.6
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2402.9 1812 69.0
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2386.3 1875 65.9
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2385.9 1853 66.4
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2384.4 1823 67.1
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2377.4 1817 66.6
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2371.7 1830 66.4
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2365.9 1810 66.1
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2364.0 1909 65.2
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 2363.6 1328 91.9
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2361.6 1821 66.3
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2356.6 1821 66.7
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2355.1 1810 66.0
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2353.2 1826 66.4
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2348.5 1816 66.2
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2343.9 1861 66.6
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2343.2 1830 65.7
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2338.1 1831 65.4
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2333.5 1849 65.3
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 2331.6 1805 66.2
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2329.7 1849 65.2
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2327.0 1805 65.7
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2323.9 1806 66.0
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2317.7 1810 65.6
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2312.7 1819 65.0
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2305.4 1822 64.9
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2301.9 1817 64.9
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2301.2 1804 65.6
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2300.0 1820 64.6
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2296.9 1815 64.9
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2291.2 1821 64.4
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2286.9 1823 64.7
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2284.2 1829 64.6
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2283.1 1816 63.7
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2278.1 1826 63.7
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2275.4 1810 64.7
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2275.0 1829 63.6
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2266.5 1818 64.4
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2261.5 1815 64.1
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2259.6 1831 64.2
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2258.8 1840 63.4
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2254.2 1826 64.1
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2253.8 1826 64.0
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2251.5 1803 63.3
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2244.5 1806 64.2
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 2243.0 1808 63.4
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2241.5 2358 53.4
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 2236.8 1808 63.2
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 2236.1 1833 62.9
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2229.9 1993 58.9
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 2226.1 1809 62.6
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 2218.0 1810 62.5
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2212.6 1823 62.5
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2207.9 1812 62.5
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 2204.5 1821 62.4
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2200.6 1800 63.5
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 2195.2 1823 61.6
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 2154.4 1822 61.2
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 2152.9 1831 60.9
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2090.5 1793 60.5
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 2052.3 1817 57.7
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1982.2 1500 66.9
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1948.3 1486 67.2
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1903.3 1094 90.6
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1899.0 1394 69.4
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1852.8 1402 67.3
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1695.2 1831 51.9
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1694.5 1310 66.3
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1686.8 1339 66.5
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1633.2 1237 69.2
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1607.8 1348 63.4
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1594.3 1853 47.4
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1570.4 1861 46.6
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1543.1 1873 45.5
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1468.0 1158 64.7
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1449.5 1638 47.7
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1340.5 1350 55.4
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1300.0 1111 58.9
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1143.6 1053 57.1
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1130.2 905 62.2
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 9.2e-289 998.0 1560 37.6
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.3e-286 989.2 886 57.9
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 8.4e-258 895.2 1744 34.8
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 5.6e-238 829.3 1742 32.7
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.8e-236 824.3 791 54.2
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 1.1e-220 771.9 635 62.5
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 4.4e-206 723.4 600 63.0
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 1.0e-194 685.6 510 68.2
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 6.6e-178 629.8 679 49.9
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 1.2e-168 599.0 450 66.9
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 1.8e-167 595.1 2011 26.6
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 2.6e-166 591.3 454 65.2
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 1.4e-156 558.9 297 98.0
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 6.6e-154 550.1 451 64.3
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.1e-148 532.7 503 54.7
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.9e-148 531.9 347 76.7
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 2.1e-144 518.5 462 61.5
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 1.3e-141 509.2 298 89.9
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 6.4e-141 506.9 295 89.5
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 1.5e-129 469.2 315 72.1
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 6.5e-117 427.2 821 35.7
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 3.1e-111 408.3 361 59.6
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 2.6e-110 405.2 1532 24.5
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 4.2e-92 344.7 182 97.3
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 8.8e-74 283.9 161 82.6
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 8.3e-72 277.3 279 53.0
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 1.2e-70 273.5 203 70.4
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 5.7e-65 254.6 339 48.4
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 5.0e-61 241.5 342 40.6
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 1.2e-59 236.9 176 72.7
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 5.2e-50 204.9 206 50.5
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 3.4e-49 202.2 209 53.1
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.4e-47 196.8 145 69.0
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 1.9e-47 196.4 161 60.2
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 2.3e-45 189.5 347 40.1
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 5.1e-45 188.3 153 60.1
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 2.6e-41 176.0 183 54.1
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 5.8e-41 174.9 130 69.2
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 1.7e-40 173.3 183 53.6
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 1.1e-39 170.6 144 62.5
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 4.1e-39 168.7 287 38.3
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 2.0e-33 149.8 217 41.0
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 5.8e-33 148.3 167 50.3
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.4e-31 142.9 258 36.4
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 2.8e-27 129.4 115 58.3
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.8e-27 128.6 168 44.0
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 6.2e-27 128.3 149 47.0
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 9.9e-25 120.9 78 78.2
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 3.8e-24 119.0 88 67.0
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 9.3e-23 114.4 79 73.4
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 6.0e-22 111.7 73 74.0
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 2.1e-19 103.2 192 29.7
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 8.1e-19 101.3 92 56.5
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 5.3e-18 98.6 84 53.6
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 2.0e-17 96.7 81 56.8
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 3.2e-15 89.4 80 61.2
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 9.3e-15 87.8 118 40.7
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 4.6e-14 85.5 55 70.9
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 3.9e-13 82.4 156 36.5
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 3.1e-10 72.8 60 56.7
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 8.4e-08 64.7 117 35.9
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 5.5e-07 62.0 117 34.2
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 7.1e-07 61.6 78 47.4
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 1.6e-06 60.5 86 47.7


User provided reference genes

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