Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 8.5e-138 493.8 277 100.0
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 8.5e-138 493.8 277 100.0
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 8.3e-133 477.2 277 96.0
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 1.4e-132 476.5 283 95.1
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 4.4e-126 454.9 277 91.3
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 5.7e-126 454.5 277 91.3
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 9.8e-126 453.8 261 96.9
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.3e-125 453.4 261 96.6
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 4.9e-125 451.4 277 89.9
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 1.1e-124 450.3 277 89.5
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 2.4e-124 449.1 277 90.3
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 3.2e-124 448.7 277 89.5
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 1.6e-123 446.4 277 88.8
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 1.6e-123 446.4 277 89.2
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.6e-123 446.4 277 89.2
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.0e-123 446.0 277 89.2
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 2.0e-123 446.0 277 89.2
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 2.0e-123 446.0 276 90.2
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 2.7e-123 445.7 277 88.4
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 4.6e-123 444.9 277 88.4
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 7.8e-123 444.1 277 88.8
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 7.8e-123 444.1 276 89.5
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.0e-122 443.7 277 88.8
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 1.3e-122 443.4 277 88.1
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 88.1
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 87.7
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 2.3e-122 442.6 277 89.2
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 87.7
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 87.7
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 5.0e-122 441.4 277 87.7
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 6.6e-122 441.0 277 88.8
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 8.6e-122 440.7 278 88.1
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 8.6e-122 440.7 277 87.7
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 1.9e-121 439.5 277 88.8
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.9e-121 439.5 277 86.6
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 3.3e-121 438.7 277 86.3
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 4.3e-121 438.3 277 87.0
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 4.3e-121 438.3 277 87.7
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 5.6e-121 438.0 277 86.6
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 5.6e-121 438.0 277 87.0
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 7.3e-121 437.6 277 86.3
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 7.3e-121 437.6 277 87.0
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 9.5e-121 437.2 277 86.6
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 85.9
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 87.0
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 3.6e-120 435.3 277 87.7
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 3.6e-120 435.3 277 85.9
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 85.2
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 87.4
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 87.4
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 1.4e-119 433.3 277 87.4
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.8e-119 433.0 277 85.9
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 2.3e-119 432.6 277 85.9
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 3.1e-119 432.2 277 87.0
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 6.8e-119 431.0 277 85.2
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 6.8e-119 431.0 277 85.2
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 8.9e-119 430.6 274 85.8
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 8.9e-119 430.6 277 86.6
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 8.9e-119 430.6 261 91.6
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.2e-118 430.3 277 86.6
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.2e-118 430.3 277 85.2
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 1.5e-118 429.9 277 84.8
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 3.4e-118 428.7 274 85.4
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 4.4e-118 428.3 277 87.0
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 5.8e-118 427.9 277 84.5
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 5.8e-118 427.9 277 85.9
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 1.1e-116 423.7 277 85.9
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 4.1e-116 421.8 277 83.0
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 4.1e-116 421.8 301 79.4
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 2.0e-115 419.5 277 85.9
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 3.5e-115 418.7 275 84.7
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.7e-114 416.4 275 84.4
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.7e-114 416.4 275 84.4
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 3.9e-114 415.2 318 74.5
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 5.0e-114 414.8 280 85.0
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 8.6e-114 414.1 321 74.1
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.9e-113 412.9 320 75.9
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.9e-113 412.9 270 87.0
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 2.5e-113 412.5 274 84.7
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 2.5e-113 412.5 277 84.5
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 1.2e-112 410.2 277 84.1
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 2.8e-112 409.1 278 83.5
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 3.6e-112 408.7 277 78.3
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 4.0e-111 405.2 277 82.3
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 5.2e-111 404.8 299 74.9
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 8.9e-111 404.1 275 80.7
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 2.0e-110 402.9 277 81.2
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 2.6e-110 402.5 278 80.2
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 4.9e-109 398.3 273 80.6
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 1.1e-108 397.1 317 69.4
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 1.1e-108 397.1 255 87.8
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 4.1e-108 395.2 278 79.5
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 5.4e-108 394.8 269 77.7
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.3e-106 390.2 274 75.5
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.5e-105 386.7 258 84.1
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.5e-105 386.7 278 78.8
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 2.5e-105 386.0 264 81.8
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 4.3e-105 385.2 284 79.2
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 5.6e-105 384.8 260 83.5
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 7.3e-105 384.4 277 78.7
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.6e-104 383.3 353 62.0
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 2.3e-103 379.4 261 81.6
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 8.9e-103 377.5 262 79.8
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 1.7e-101 373.2 331 70.4
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 1.1e-100 370.5 281 76.5
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 1.5e-97 360.1 230 85.7
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.9e-97 359.8 230 87.0
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 5.6e-97 358.2 222 90.1
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 1.3e-93 347.1 222 87.8
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 7.8e-91 337.8 277 64.6
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.3e-90 336.3 250 77.6
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.3e-90 336.3 250 77.6
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 5.1e-90 335.1 224 85.3
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 5.1e-90 335.1 268 70.5
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 5.6e-89 331.6 277 67.5
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.2e-86 323.9 313 64.9
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 4.4e-86 322.0 274 70.1
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 3.8e-85 318.9 274 63.5
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.9e-85 318.5 274 69.7
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 6.4e-85 318.2 281 66.2
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 1.4e-84 317.0 284 67.3
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 3.9e-74 282.3 258 62.8
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 1.0e-69 267.7 187 80.7
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 1.0e-66 257.7 283 55.5
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.8e-66 256.9 287 51.9
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 8.5e-61 238.0 156 78.2
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 7.2e-60 235.0 181 79.0
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 3.3e-57 226.1 145 89.0
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 1.8e-55 220.3 129 87.6
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 6.9e-55 218.4 138 83.3
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 7.9e-51 204.9 132 81.1
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.6e-49 199.9 306 45.8
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 2.6e-41 173.3 106 84.0
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 4.4e-41 172.6 97 90.7
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 9.7e-41 171.4 90 95.6
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 8.0e-35 151.8 84 90.5
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 6.3e-32 142.1 155 57.4
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 4.1e-31 139.4 80 86.2
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 2.9e-29 133.3 80 81.2
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.8e-29 132.9 74 90.5
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 3.8e-29 132.9 74 90.5
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 7.7e-22 108.6 258 36.0
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 8.5e-21 105.1 157 45.9
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.6e-19 99.8 73 87.7
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 4.7e-19 99.4 149 47.7
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 1.0e-18 98.2 104 57.7
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 5.2e-18 95.9 146 40.4
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.6e-17 93.6 73 79.5
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 2.6e-17 93.6 173 38.2
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 7.5e-17 92.0 57 77.2
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 1.7e-16 90.9 156 40.4
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 2.2e-16 90.5 160 40.0
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 2.8e-16 90.1 74 68.9
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.7e-14 83.6 155 35.5
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 5.9e-14 82.4 48 81.2
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.8e-13 79.7 46 87.0
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.8e-13 79.7 46 84.8
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 4.3e-12 76.3 263 31.6
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 9.5e-12 75.1 157 39.5
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.8e-11 73.6 162 35.8
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 1.8e-10 70.9 43 79.1
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.5e-09 65.5 140 42.1
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 5.9e-06 55.8 47 59.6


User provided reference genes

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