Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g023400 Solanum pennellii HOM05D000132 ORTHO05D000058 4.9e-35 150.6 76 100.0
PGSC0003DMG400022056 Solanum tuberosum HOM05D000132 ORTHO05D000058 1.6e-30 135.6 76 88.2
PGSC0003DMG401006401 Solanum tuberosum HOM05D000132 ORTHO05D000058 2.0e-28 128.6 72 87.5
PGSC0003DMG400012992 Solanum tuberosum HOM05D000132 ORTHO05D000058 1.1e-26 122.9 72 80.6
CAN.G517.2 Capsicum annuum HOM05D000132 ORTHO05D000058 1.9e-26 122.1 76 78.9
Nitab4.5_0001816g0110 Nicotiana tabacum HOM05D000132 ORTHO05D000058 3.2e-26 121.3 81 77.8
Nitab4.5_0000232g0270 Nicotiana tabacum HOM05D000132 ORTHO05D000058 3.5e-25 117.9 70 80.0
Nitab4.5_0000232g0330 Nicotiana tabacum HOM05D000132 ORTHO05D000058 6.0e-25 117.1 70 80.0
PGSC0003DMG400027970 Solanum tuberosum HOM05D000132 ORTHO05D000058 1.3e-24 115.9 76 76.3
Solyc04g074020.2 Solanum lycopersicum HOM05D000132 ORTHO05D000058 3.9e-24 114.4 70 78.6
Solyc04g074050.4 Solanum lycopersicum HOM05D000132 ORTHO05D000058 3.9e-24 114.4 70 78.6
Nitab4.5_0001307g0030 Nicotiana tabacum HOM05D000132 ORTHO05D000058 6.6e-24 113.6 70 77.1
PGSC0003DMG400027971 Solanum tuberosum HOM05D000132 ORTHO05D000058 2.5e-23 111.7 81 70.4
CAN.G101.36 Capsicum annuum HOM05D000132 ORTHO05D000058 2.8e-22 108.2 71 74.6
PGSC0003DMG400027967 Solanum tuberosum HOM05D000132 ORTHO05D000058 6.2e-22 107.1 82 70.7
CAN.G101.13 Capsicum annuum HOM05D000132 ORTHO05D000058 1.1e-21 106.3 63 79.4
Nitab4.5_0005157g0010 Nicotiana tabacum HOM05D000132 ORTHO05D000058 1.8e-21 105.5 61 86.9
CAN.G193.27 Capsicum annuum HOM05D000132 ORTHO05D000058 2.3e-21 105.1 63 79.4
Nitab4.5_0005052g0030 Nicotiana tabacum HOM05D000132 ORTHO05D000058 5.2e-21 104.0 70 80.0
CAN.G2870.1 Capsicum annuum HOM05D000132 ORTHO05D000058 2.0e-20 102.1 63 77.8
CAN.G792.52 Capsicum annuum HOM05D000132 ORTHO05D000058 9.9e-20 99.8 66 75.8
CAN.G101.12 Capsicum annuum HOM05D000132 ORTHO05D000058 6.4e-19 97.1 63 74.6
PGSC0003DMG400017713 Solanum tuberosum HOM05D000132 ORTHO05D000058 2.4e-18 95.1 70 75.7
Solyc04g074000.3 Solanum lycopersicum HOM05D000132 ORTHO05D000058 5.4e-18 94.0 70 74.3
Solyc04g074030.3 Solanum lycopersicum HOM05D000132 ORTHO05D000058 5.4e-18 94.0 70 74.3
Sopen04g029230 Solanum pennellii HOM05D000132 ORTHO05D000058 5.4e-18 94.0 70 74.3
CAN.G1836.1 Capsicum annuum HOM05D000132 ORTHO05D000058 3.5e-17 91.3 69 75.4
CAN.G1836.2 Capsicum annuum HOM05D000132 ORTHO05D000058 1.7e-16 89.0 61 75.4
Peaxi162Scf00756g00438 Petunia axillaris HOM05D000132 ORTHO05D000058 1.1e-15 86.3 61 75.4
Peaxi162Scf00041g01421 Petunia axillaris HOM05D000132 ORTHO05D000058 1.2e-14 82.8 61 70.5
Peaxi162Scf00041g01422 Petunia axillaris HOM05D000132 ORTHO05D000058 1.2e-14 82.8 63 65.1
CAN.G1522.8 Capsicum annuum HOM05D000132 ORTHO05D000058 2.1e-14 82.0 56 76.8
Peaxi162Scf00041g01423 Petunia axillaris HOM05D000132 ORTHO05D000058 2.4e-13 78.6 61 70.5
CAN.G906.4 Capsicum annuum HOM05D000004 ORTHO05D000058 6.8e-13 77.0 58 70.7
Cc10_g15220 Coffea canephora HOM05D000132 ORTHO05D000058 7.8e-09 63.5 67 50.7
Cc03_g08620 Coffea canephora HOM05D000132 ORTHO05D000058 1.0e-08 63.2 69 46.4
Cc10_g15250 Coffea canephora HOM05D000132 ORTHO05D000058 1.0e-08 63.2 67 50.7
Cc00_g11200 Coffea canephora HOM05D000132 ORTHO05D000058 3.0e-08 61.6 58 50.0
Duzib151G1163 Durio zibethinus HOM05D000132 ORTHO05D000058 3.0e-08 61.6 62 45.2
Glyma.19G081200 Glycine max HOM05D000132 ORTHO05D000058 3.0e-08 61.6 77 41.6
Cc03_g08750 Coffea canephora HOM05D000132 ORTHO05D000058 3.9e-08 61.2 63 52.4
Cc03_g08690 Coffea canephora HOM05D000132 ORTHO05D000058 6.6e-08 60.5 57 50.9
Cc03_g08770 Coffea canephora HOM05D000132 ORTHO05D000058 6.6e-08 60.5 57 50.9
Thecc.09G030000 Theobroma cacao HOM05D000132 ORTHO05D000058 6.6e-08 60.5 59 50.8
Cc03_g08610 Coffea canephora HOM05D000132 ORTHO05D000058 8.7e-08 60.1 58 48.3
Lj4P370T36 Lonicera japonica HOM05D000132 ORTHO05D000058 8.7e-08 60.1 69 43.5
Thecc.04G267300 Theobroma cacao HOM05D000132 ORTHO05D000058 1.1e-07 59.7 64 48.4
CAN.G792.59 Capsicum annuum HOM05D000132 ORTHO05D000058 1.5e-07 59.3 65 56.9
Glyma.16G064200 Glycine max HOM05D000132 ORTHO05D000058 1.5e-07 59.3 71 42.3
QL09p050184 Quercus lobata HOM05D000132 ORTHO05D000058 1.5e-07 59.3 61 50.8
VMungo1383G1506 Vigna mungo HOM05D000132 ORTHO05D000058 1.5e-07 59.3 67 43.3
Thecc.09G030300 Theobroma cacao HOM05D000132 ORTHO05D000058 1.9e-07 58.9 67 46.3
QL09p022424 Quercus lobata HOM05D000132 ORTHO05D000058 2.5e-07 58.5 62 53.2
vmacro04746 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 2.5e-07 58.5 55 50.9
CiPaw.07G180600 Carya illinoinensis HOM05D000132 ORTHO05D000058 3.3e-07 58.2 62 46.8
CSS0000742 Camellia sinensis var. sinensis HOM05D000132 ORTHO05D000058 4.3e-07 57.8 59 44.1
CSS0012180 Camellia sinensis var. sinensis HOM05D000132 ORTHO05D000058 5.6e-07 57.4 59 44.1
CiPaw.11G040300 Carya illinoinensis HOM05D000132 ORTHO05D000058 5.6e-07 57.4 55 45.5
Phvul.008G146000 Phaseolus vulgaris HOM05D000132 ORTHO05D000058 5.6e-07 57.4 69 39.1
QL03p072189 Quercus lobata HOM05D000132 ORTHO05D000058 5.6e-07 57.4 62 50.0
CSS0020796 Camellia sinensis var. sinensis HOM05D000132 ORTHO05D000058 7.3e-07 57.0 59 42.4
Dinv13019 Davidia involucrata HOM05D000132 ORTHO05D000058 7.3e-07 57.0 59 47.5
CAN.G792.57 Capsicum annuum HOM05D000132 ORTHO05D000058 9.6e-07 56.6 65 55.4
FAN17G1752 Fragaria x ananassa HOM05D000132 ORTHO05D000058 9.6e-07 56.6 60 46.7
Glyma.16G064100 Glycine max HOM05D000132 ORTHO05D000058 9.6e-07 56.6 72 38.9
Lj3C532G0 Lonicera japonica HOM05D000132 ORTHO05D000058 9.6e-07 56.6 65 47.7
PGR102G2064 Punica granatum HOM05D000132 ORTHO05D000058 9.6e-07 56.6 65 41.5
QL03p072569 Quercus lobata HOM05D000132 ORTHO05D000058 9.6e-07 56.6 62 53.2
CAN.G101.32 Capsicum annuum HOM05D000132 ORTHO05D000058 1.2e-06 56.2 47 63.8
Cc10_g07290 Coffea canephora HOM05D000132 ORTHO05D000058 1.2e-06 56.2 61 47.5
FvH4_4g04540 Fragaria vesca HOM05D000132 ORTHO05D000058 1.2e-06 56.2 60 46.7
CiPaw.08G044600 Carya illinoinensis HOM05D000132 ORTHO05D000058 1.6e-06 55.8 61 44.3
CiPaw.10G111900 Carya illinoinensis HOM05D000132 ORTHO05D000058 1.6e-06 55.8 59 44.1
CiPaw.12G015100 Carya illinoinensis HOM05D000132 ORTHO05D000058 1.6e-06 55.8 64 43.8
Lj2C652T1 Lonicera japonica HOM05D000132 ORTHO05D000058 1.6e-06 55.8 58 48.3
Lj3A512G19 Lonicera japonica HOM05D000132 ORTHO05D000058 1.6e-06 55.8 51 52.9
Lj4C269T3 Lonicera japonica HOM05D000132 ORTHO05D000058 1.6e-06 55.8 58 46.6
QL04p018908 Quercus lobata HOM05D000132 ORTHO05D000058 1.6e-06 55.8 62 48.4
VMungo1383G0453 Vigna mungo HOM05D000132 ORTHO05D000058 1.6e-06 55.8 65 43.1
CiPaw.11G040000 Carya illinoinensis HOM05D000132 ORTHO05D000058 2.1e-06 55.5 55 43.6
Cc00_g05990 Coffea canephora HOM05D000132 ORTHO05D000058 2.1e-06 55.5 66 42.4
Cc00_g11980 Coffea canephora HOM05D000132 ORTHO05D000058 2.1e-06 55.5 64 45.3
QL09p029296 Quercus lobata HOM05D000132 ORTHO05D000058 2.1e-06 55.5 62 46.8
CSS0022377 Camellia sinensis var. sinensis HOM05D000132 ORTHO05D000058 2.8e-06 55.1 55 47.3
Glyma.16G064401 Glycine max HOM05D000132 ORTHO05D000058 2.8e-06 55.1 65 43.1
Glyma.16G065600 Glycine max HOM05D000132 ORTHO05D000058 2.8e-06 55.1 65 43.1
Lj3A530T28 Lonicera japonica HOM05D000132 ORTHO05D000058 2.8e-06 55.1 57 50.9
Lj3A567T30 Lonicera japonica HOM05D000132 ORTHO05D000058 2.8e-06 55.1 58 44.8
Lj3C554T4 Lonicera japonica HOM05D000132 ORTHO05D000058 2.8e-06 55.1 58 44.8
PGR004G0720 Punica granatum HOM05D000132 ORTHO05D000058 2.8e-06 55.1 65 41.5
Sopen04g031750 Solanum pennellii HOM05D000132 ORTHO05D000058 2.8e-06 55.1 44 70.5
CiPaw.11G041000 Carya illinoinensis HOM05D000132 ORTHO05D000058 3.6e-06 54.7 53 47.2
CiPaw.12G014900 Carya illinoinensis HOM05D000132 ORTHO05D000058 3.6e-06 54.7 51 51.0
Ciclev10018678m.g Citrus clementina HOM05D000132 ORTHO05D000058 3.6e-06 54.7 59 42.4
Cc03_g08600 Coffea canephora HOM05D000132 ORTHO05D000058 3.6e-06 54.7 58 44.8
Lj1C1104G4 Lonicera japonica HOM05D000132 ORTHO05D000058 3.6e-06 54.7 58 43.1
Lj3A547T67 Lonicera japonica HOM05D000132 ORTHO05D000058 3.6e-06 54.7 58 48.3
Medtr1g039080 Medicago truncatula HOM05D000132 ORTHO05D000058 3.6e-06 54.7 55 43.6
QL03p023534 Quercus lobata HOM05D000132 ORTHO05D000058 3.6e-06 54.7 59 47.5
QL09p022782 Quercus lobata HOM05D000132 ORTHO05D000058 3.6e-06 54.7 62 45.2
RcHm_v2.0_Chr7g0239161 Rosa chinensis HOM05D000132 ORTHO05D000058 3.6e-06 54.7 62 45.2
CiPaw.08G052000 Carya illinoinensis HOM05D000132 ORTHO05D000058 4.7e-06 54.3 56 51.8
Cc03_g10610 Coffea canephora HOM05D000132 ORTHO05D000058 4.7e-06 54.3 64 43.8
Dinv41057 Davidia involucrata HOM05D000132 ORTHO05D000058 4.7e-06 54.3 69 39.1
Lj3A330T22 Lonicera japonica HOM05D000132 ORTHO05D000058 4.7e-06 54.3 57 50.9
Lj3A546T24 Lonicera japonica HOM05D000132 ORTHO05D000058 4.7e-06 54.3 65 46.2
PGR004G1831 Punica granatum HOM05D000132 ORTHO05D000058 4.7e-06 54.3 62 40.3
PGR004G1854 Punica granatum HOM05D000132 ORTHO05D000058 4.7e-06 54.3 70 35.7
QL09p022761 Quercus lobata HOM05D000132 ORTHO05D000058 4.7e-06 54.3 62 46.8
CiPaw.11G040500 Carya illinoinensis HOM05D000132 ORTHO05D000058 6.2e-06 53.9 54 44.4
Duzib211G0329 Durio zibethinus HOM05D000132 ORTHO05D000058 6.2e-06 53.9 61 39.3
FAN16G2601 Fragaria x ananassa HOM05D000132 ORTHO05D000058 6.2e-06 53.9 55 49.1
FAN16G2837 Fragaria x ananassa HOM05D000132 ORTHO05D000058 6.2e-06 53.9 55 49.1
FAN21G2134 Fragaria x ananassa HOM05D000132 ORTHO05D000058 6.2e-06 53.9 55 49.1
Glyma.16G065400 Glycine max HOM05D000132 ORTHO05D000058 6.2e-06 53.9 65 43.1
Gohir.A06G036000 Gossypium hirsutum HOM05D000132 ORTHO05D000058 6.2e-06 53.9 51 52.9
Lj3C505G6 Lonicera japonica HOM05D000132 ORTHO05D000058 6.2e-06 53.9 50 52.0
Lj3C535G2 Lonicera japonica HOM05D000132 ORTHO05D000058 6.2e-06 53.9 65 46.2
Phvul.008G146600 Phaseolus vulgaris HOM05D000132 ORTHO05D000058 6.2e-06 53.9 49 55.1
QL04p020227 Quercus lobata HOM05D000132 ORTHO05D000058 6.2e-06 53.9 62 46.8
CiPaw.14G079600 Carya illinoinensis HOM05D000132 ORTHO05D000058 8.1e-06 53.5 70 42.9
Cc00_g05240 Coffea canephora HOM05D000132 ORTHO05D000058 8.1e-06 53.5 64 40.6
Cc00_g16930 Coffea canephora HOM05D000132 ORTHO05D000058 8.1e-06 53.5 62 41.9
Glyma.U024802 Glycine max HOM05D000132 ORTHO05D000058 8.1e-06 53.5 56 42.9
QL09p022121 Quercus lobata HOM05D000132 ORTHO05D000058 8.1e-06 53.5 62 43.5


User provided reference genes

Program Settings