Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g022910 Solanum pennellii HOM05D000891 ORTHO05D000761 3.5e-65 251.5 130 100.0
Sopen02g024600 Solanum pennellii HOM05D000891 ORTHO05D000761 7.0e-50 200.7 114 91.2
Solyc02g079830.1 Solanum lycopersicum HOM05D000891 ORTHO05D000761 3.5e-49 198.4 111 91.9
PGSC0003DMG400021712 Solanum tuberosum HOM05D000891 ORTHO05D000761 8.6e-48 193.7 110 90.0
CAN.G424.89 Capsicum annuum HOM05D000891 ORTHO05D000761 2.9e-35 152.1 114 71.9
Nitab4.5_0003045g0010 Nicotiana tabacum HOM05D000891 ORTHO05D000761 3.9e-32 141.7 112 67.0
Peaxi162Scf00931g00051 Petunia axillaris HOM05D000891 ORTHO05D000761 7.1e-26 120.9 110 60.9
CAN.G424.88 Capsicum annuum HOM05D000891 ORTHO05D000761 7.3e-15 84.3 127 44.1
Nitab4.5_0002544g0030 Nicotiana tabacum HOM05D000891 ORTHO05D000761 3.6e-14 82.0 121 44.6
Nitab4.5_0001586g0030 Nicotiana tabacum HOM05D000891 ORTHO05D000761 6.2e-14 81.3 122 44.3
Nitab4.5_0001586g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 1.1e-13 80.5 120 45.0
QL05p077799 Quercus lobata HOM05D000891 ORTHO05D000761 5.3e-13 78.2 118 44.1
Sed0012246 Sechium edule HOM05D000891 ORTHO05D000761 5.3e-13 78.2 117 42.7
Nitab4.5_0002544g0080 Nicotiana tabacum HOM05D000891 ORTHO05D000761 1.5e-12 76.6 120 44.2
PGSC0003DMG400021711 Solanum tuberosum HOM05D000891 ORTHO05D000761 2.0e-12 76.3 111 46.8
Oeu038199.2 Olea europaea HOM05D000891 ORTHO05D000761 7.6e-12 74.3 118 41.5
vmacro03743 Vaccinium macrocarpon HOM05D000891 ORTHO05D000761 9.9e-12 73.9 124 46.0
Dinv18956 Davidia involucrata HOM05D000891 ORTHO05D000761 1.3e-11 73.6 115 44.3
Peaxi162Scf00180g00114 Petunia axillaris HOM05D000891 ORTHO05D000761 2.9e-11 72.4 125 40.8
Haze_06658 Corylus avellana HOM05D000891 ORTHO05D000761 6.4e-11 71.2 118 40.7
Cfa000283 Carpinus fangiana HOM05D000891 ORTHO05D000761 1.4e-10 70.1 115 42.6
Duzib235G1047 Durio zibethinus HOM05D000891 ORTHO05D000761 2.4e-10 69.3 118 40.7
CAN.G874.55 Capsicum annuum HOM05D000891 ORTHO05D000761 3.2e-10 68.9 111 42.3
MELO3C007346.2 Cucumis melo HOM05D000891 ORTHO05D000761 4.2e-10 68.6 122 39.3
ClCG01G022320 Citrullus lanatus HOM05D000891 ORTHO05D000761 9.3e-10 67.4 129 37.2
Sed0024534 Sechium edule HOM05D000891 ORTHO05D000761 9.3e-10 67.4 117 40.2
Manes.17G030600 Manihot esculenta HOM05D000891 ORTHO05D000761 1.2e-09 67.0 114 42.1
Thecc.06G206500 Theobroma cacao HOM05D000891 ORTHO05D000761 1.2e-09 67.0 120 43.3
CARHR087740 Cardamine hirsuta HOM05D000891 ORTHO05D000761 2.7e-09 65.9 139 36.0
CsaV3_6G049490 Cucumis sativus L. HOM05D000891 ORTHO05D000761 3.5e-09 65.5 123 36.6
Peaxi162Scf00390g00015 Petunia axillaris HOM05D000891 ORTHO05D000761 3.5e-09 65.5 113 41.6
Sabra04G0017000 Salix brachista HOM05D000891 ORTHO05D000761 3.5e-09 65.5 117 40.2
COL.COLO4_30354 Corchorus olitorius HOM05D000891 ORTHO05D000761 4.6e-09 65.1 113 39.8
CsaV3_6G049480 Cucumis sativus L. HOM05D000891 ORTHO05D000761 6.0e-09 64.7 122 37.7
Actinidia05549 Actinidia chinensis HOM05D000891 ORTHO05D000761 7.8e-09 64.3 114 42.1
MELO3C007342.2 Cucumis melo HOM05D000891 ORTHO05D000761 7.8e-09 64.3 122 36.9
Gohir.A10G017600 Gossypium hirsutum HOM05D000891 ORTHO05D000761 7.8e-09 64.3 118 40.7
SHI02374 Sapria himalayana HOM05D000891 ORTHO05D000761 1.0e-08 63.9 75 48.0
Gorai.011G019800 Gossypium raimondii HOM05D000891 ORTHO05D000761 1.3e-08 63.5 118 40.7
TWI38G1619 Tripterygium wilfordii HOM05D000891 ORTHO05D000761 1.3e-08 63.5 110 37.3
SalBow5G3563 Salvia bowleyana HOM05D000891 ORTHO05D000761 1.7e-08 63.2 110 43.6
Gohir.D10G017800 Gossypium hirsutum HOM05D000891 ORTHO05D000761 2.3e-08 62.8 118 40.7
Phvul.002G219400 Phaseolus vulgaris HOM05D000891 ORTHO05D000761 2.3e-08 62.8 89 44.9
CsaV3_6G049500 Cucumis sativus L. HOM05D000891 ORTHO05D000761 3.0e-08 62.4 124 37.9
Sp3g11320 Schrenkiella parvula HOM05D000891 ORTHO05D000761 3.9e-08 62.0 141 32.6
Lj2P276T41 Lonicera japonica HOM05D000891 ORTHO05D000761 5.1e-08 61.6 89 44.9
Potri.004G030000 Populus trichocarpa HOM05D000891 ORTHO05D000761 8.7e-08 60.8 118 35.6
TWI38G0473 Tripterygium wilfordii HOM05D000891 ORTHO05D000761 8.7e-08 60.8 109 34.9
A01p40400 Brassica napus HOM05D000891 ORTHO05D000761 1.1e-07 60.5 145 34.5
BolC1t05142H Brassica oleracea HOM05D000891 ORTHO05D000761 1.1e-07 60.5 143 35.0
Cc02_g11880 Coffea canephora HOM05D000891 ORTHO05D000761 1.1e-07 60.5 121 37.2
Cc02_g11890 Coffea canephora HOM05D000891 ORTHO05D000761 1.1e-07 60.5 117 36.8
VMungo0251G0138 Vigna mungo HOM05D000891 ORTHO05D000761 1.5e-07 60.1 116 38.8
VMungo0251G3555 Vigna mungo HOM05D000891 ORTHO05D000761 1.5e-07 60.1 111 38.7
C01p51940 Brassica napus HOM05D000891 ORTHO05D000761 1.9e-07 59.7 145 34.5
BraA01t04075Z Brassica rapa HOM05D000891 ORTHO05D000761 1.9e-07 59.7 147 34.0
COL.COLO4_31673 Corchorus olitorius HOM05D000891 ORTHO05D000761 1.9e-07 59.7 82 46.3
Lj2P276T46 Lonicera japonica HOM05D000891 ORTHO05D000761 2.5e-07 59.3 102 43.1
VMungo0251G1977 Vigna mungo HOM05D000891 ORTHO05D000761 2.5e-07 59.3 111 38.7
Glyma.08G061500 Glycine max HOM05D000891 ORTHO05D000761 4.3e-07 58.5 111 38.7
Lalb_Chr05g0218021 Lupinus albus HOM05D000891 ORTHO05D000761 5.6e-07 58.2 85 43.5
THA.LOC104822733 Tarenaya hassleriana HOM05D000891 ORTHO05D000761 5.6e-07 58.2 139 32.4
AT3G13150 Arabidopsis thaliana HOM05D000891 ORTHO05D000761 7.3e-07 57.8 138 33.3
Ca_18462_v3 Cicer arietinum L. HOM05D000891 ORTHO05D000761 7.3e-07 57.8 91 41.8
Ca_29634_v3 Cicer arietinum L. HOM05D000891 ORTHO05D000761 7.3e-07 57.8 91 41.8
Sabra11G0019500 Salix brachista HOM05D000891 ORTHO05D000761 7.3e-07 57.8 134 35.8
Sabra11G0025400 Salix brachista HOM05D000891 ORTHO05D000761 7.3e-07 57.8 134 35.8
SGA_v2.0_scaffold382G50400 Striga asiatica HOM05D000891 ORTHO05D000761 7.3e-07 57.8 114 36.0
CANSAT56G1279 Cannabis sativa HOM05D000891 ORTHO05D000761 9.6e-07 57.4 117 39.3
Glyma.07G187800 Glycine max HOM05D000891 ORTHO05D000761 9.6e-07 57.4 92 40.2
Carub.0003s1249 Capsella rubella HOM05D000891 ORTHO05D000761 1.3e-06 57.0 133 33.1
CDE02G1592 Ceratophyllum demersum HOM05D000891 ORTHO05D000761 1.3e-06 57.0 69 44.9
Lj6g0017835 Lotus japonicus HOM05D000891 ORTHO05D000761 1.3e-06 57.0 67 47.8
Ciclev10015628m.g Citrus clementina HOM05D000891 ORTHO05D000761 1.6e-06 56.6 76 43.4
Psat7g107640 Pisum sativum HOM05D000891 ORTHO05D000761 1.6e-06 56.6 86 40.7
Prupe.4G030500 Prunus persica HOM05D000891 ORTHO05D000761 1.6e-06 56.6 79 40.5
MBI02_g35313_MAGBIO Magnolia biondii HOM05D000891 ORTHO05D000761 2.1e-06 56.2 77 42.9
Rhsim13G0163200 Rhododendron simsii HOM05D000891 ORTHO05D000761 2.1e-06 56.2 82 40.2
arahy.Tifrunner.gnm1.ann1.2DT13A Arachis hypogaea HOM05D000891 ORTHO05D000761 2.8e-06 55.8 78 41.0
DCAR_004172 Daucus carota HOM05D000891 ORTHO05D000761 2.8e-06 55.8 97 39.2
MD05G1334700 Malus domestica HOM05D000891 ORTHO05D000761 2.8e-06 55.8 81 40.7
Rhsim13G0163100 Rhododendron simsii HOM05D000891 ORTHO05D000761 2.8e-06 55.8 164 32.3
Aa31LG8G350 Aethionema arabicum HOM05D000891 ORTHO05D000761 4.8e-06 55.1 136 31.6
AUR62014635 Chenopodium quinoa HOM05D000891 ORTHO05D000761 4.8e-06 55.1 126 34.9
AL1G64030 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 6.2e-06 54.7 121 36.4
arahy.Tifrunner.gnm1.ann1.PL0MZ0 Arachis hypogaea HOM05D000687 ORTHO05D000761 6.2e-06 54.7 76 40.8
EL10As6g23660 Beta vulgaris HOM05D000022 ORTHO05D000071 6.2e-06 54.7 69 43.5
FvH4_3g03160 Fragaria vesca HOM05D000891 ORTHO05D000761 6.2e-06 54.7 93 37.6
FAN25G2188 Fragaria x ananassa HOM05D000891 ORTHO05D000761 6.2e-06 54.7 93 37.6
Potri.004G029900 Populus trichocarpa HOM05D000891 ORTHO05D000761 6.2e-06 54.7 81 39.5
Carub.0001s4448 Capsella rubella HOM05D000891 ORTHO05D000761 8.1e-06 54.3 71 43.7


User provided reference genes

Program Settings