Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 8.3e-51 203.4 100 100.0
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 8.3e-51 203.4 100 100.0
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 1.6e-49 199.1 100 98.0
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 2.4e-42 175.3 99 86.9
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 2.4e-42 175.3 99 86.9
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 5.1e-32 141.0 107 69.2
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 6.9e-29 130.6 100 67.0
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 1.2e-28 129.8 98 68.4
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 7.6e-28 127.1 95 66.3
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 1.4e-26 122.9 93 64.5
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 3.2e-26 121.7 93 63.4
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 5.4e-26 120.9 91 64.8
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 5.4e-26 120.9 100 65.0
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 9.3e-26 120.2 81 71.6
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 2.1e-25 119.0 94 63.8
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 2.1e-25 119.0 93 63.4
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 2.7e-25 118.6 88 63.6
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 3.5e-25 118.2 80 68.8
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 6.0e-25 117.5 78 66.7
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 1.3e-24 116.3 102 59.8
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 1.3e-24 116.3 93 63.4
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 3.0e-24 115.2 89 66.3
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 6.6e-24 114.0 78 69.2
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 8.7e-24 113.6 85 64.7
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 1.1e-23 113.2 102 58.8
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 1.1e-23 113.2 89 62.9
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 1.5e-23 112.8 97 58.8
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 1.5e-23 112.8 78 67.9
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.9e-23 112.5 78 67.9
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.9e-23 112.5 89 58.4
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.9e-23 112.5 93 59.1
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 2.5e-23 112.1 91 62.6
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 2.5e-23 112.1 100 58.0
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.3e-23 111.7 88 59.1
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.3e-23 111.7 88 59.1
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 3.3e-23 111.7 80 67.5
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 4.3e-23 111.3 76 69.7
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 4.3e-23 111.3 91 60.4
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 4.3e-23 111.3 75 69.3
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 5.6e-23 110.9 95 57.9
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 5.6e-23 110.9 73 69.9
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 5.6e-23 110.9 74 70.3
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 5.6e-23 110.9 82 61.0
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 7.3e-23 110.5 85 64.7
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 7.3e-23 110.5 77 66.2
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 7.3e-23 110.5 95 57.9
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 7.3e-23 110.5 70 72.9
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 7.3e-23 110.5 95 58.9
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 7.3e-23 110.5 78 70.5
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 9.6e-23 110.2 102 60.8
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 9.6e-23 110.2 77 67.5
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 9.6e-23 110.2 91 60.4
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 1.6e-22 109.4 92 58.7
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 1.6e-22 109.4 100 56.0
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 2.8e-22 108.6 88 59.1
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 2.8e-22 108.6 76 72.4
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 2.8e-22 108.6 76 72.4
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.6e-22 108.2 74 68.9
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.6e-22 108.2 100 57.0
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.6e-22 108.2 95 57.9
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.6e-22 108.2 88 58.0
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 3.6e-22 108.2 107 55.1
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 4.8e-22 107.8 96 55.2
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 4.8e-22 107.8 92 55.4
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 4.8e-22 107.8 88 60.2
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 8.1e-22 107.1 94 58.5
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.1e-21 106.7 96 56.2
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.1e-21 106.7 96 56.2
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 1.1e-21 106.7 92 54.3
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 1.1e-21 106.7 93 58.1
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 1.1e-21 106.7 73 68.5
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.4e-21 106.3 92 56.5
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.4e-21 106.3 92 56.5
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.4e-21 106.3 98 58.2
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 1.8e-21 105.9 83 60.2
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 1.8e-21 105.9 92 54.3
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 1.8e-21 105.9 69 69.6
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.8e-21 105.9 83 65.1
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.8e-21 105.9 93 55.9
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 1.8e-21 105.9 95 51.6
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 2.4e-21 105.5 89 58.4
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 2.4e-21 105.5 107 53.3
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.4e-21 105.5 98 54.1
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 3.1e-21 105.1 81 63.0
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 3.1e-21 105.1 81 63.0
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 3.1e-21 105.1 89 58.4
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 3.1e-21 105.1 68 70.6
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 4.0e-21 104.8 89 58.4
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 4.0e-21 104.8 95 54.7
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 5.3e-21 104.4 71 66.2
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 6.9e-21 104.0 103 54.4
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 9.0e-21 103.6 85 60.0
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 9.0e-21 103.6 96 56.2
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 9.0e-21 103.6 74 64.9
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 1.2e-20 103.2 83 61.4
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.2e-20 103.2 67 71.6
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.5e-20 102.8 83 60.2
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.5e-20 102.8 98 58.2
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 2.0e-20 102.4 95 56.8
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 2.6e-20 102.1 68 70.6
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 3.4e-20 101.7 89 56.2
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 4.5e-20 101.3 77 64.9
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 4.5e-20 101.3 89 57.3
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 5.8e-20 100.9 67 70.1
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 1.3e-19 99.8 80 60.0
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.7e-19 99.4 66 74.2
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 2.2e-19 99.0 78 64.1
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 2.9e-19 98.6 94 55.3
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 2.9e-19 98.6 94 55.3
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 2.9e-19 98.6 62 74.2
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 3.8e-19 98.2 89 56.2
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 4.9e-19 97.8 90 56.7
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 6.4e-19 97.4 87 50.6
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 6.4e-19 97.4 74 68.9
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 6.4e-19 97.4 74 68.9
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 8.4e-19 97.1 89 55.1
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 8.4e-19 97.1 78 62.8
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 8.4e-19 97.1 92 56.5
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 1.1e-18 96.7 79 63.3
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 1.4e-18 96.3 79 58.2
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 1.9e-18 95.9 74 62.2
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 1.9e-18 95.9 90 56.7
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 1.9e-18 95.9 111 47.7
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 2.4e-18 95.5 78 59.0
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 3.2e-18 95.1 70 62.9
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 3.2e-18 95.1 82 57.3
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 1.6e-17 92.8 61 70.5
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 2.1e-17 92.4 61 68.9
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 2.7e-17 92.0 88 53.4
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 2.7e-17 92.0 92 52.2
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 2.7e-17 92.0 64 65.6
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 3.5e-17 91.7 73 61.6
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 4.6e-17 91.3 69 63.8
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 2.3e-16 89.0 64 67.2
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 6.7e-16 87.4 80 55.0
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.6e-14 82.8 72 58.3
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.1e-14 82.4 77 54.5
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.7e-14 81.6 72 56.9
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 6.2e-14 80.9 76 53.9
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 6.2e-14 80.9 75 53.3
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 1.1e-13 80.1 75 52.0
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 1.1e-13 80.1 75 52.0
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 1.4e-13 79.7 73 57.5
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.4e-13 79.7 72 55.6
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 5.3e-13 77.8 55 65.5
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 4.5e-12 74.7 62 59.7
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 7.6e-12 73.9 78 52.6
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.3e-11 73.2 63 58.7
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.7e-11 72.8 72 52.8
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 2.9e-11 72.0 60 55.0
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 4.6e-09 64.7 105 38.1
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 7.9e-09 63.9 78 46.2
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.0e-08 63.5 63 46.0
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 7.4e-07 57.4 34 79.4
GSVIVG01015950001 Vitis vinifera HOM05D004571 ORTHO05D005334 7.4e-07 57.4 34 76.5
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.6e-06 56.2 41 56.1


User provided reference genes

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