Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g023790 Solanum pennellii HOM05D003579 ORTHO05D004266 7.2e-50 200.3 102 100.0
Sopen11g021990 Solanum pennellii HOM05D003579 ORTHO05D004266 7.2e-50 200.3 102 100.0
Nitab4.5_0000033g0340 Nicotiana tabacum HOM05D003579 ORTHO05D004266 3.1e-21 105.1 60 86.7
Solyc06g072380.3 Solanum lycopersicum HOM05D003579 ORTHO05D004266 3.1e-21 105.1 54 100.0
Sopen06g028750 Solanum pennellii HOM05D003579 ORTHO05D004266 3.1e-21 105.1 54 100.0
Nitab4.5_0003127g0010 Nicotiana tabacum HOM05D003579 ORTHO05D004266 4.1e-21 104.8 60 85.0
PGSC0003DMG400026957 Solanum tuberosum HOM05D003579 ORTHO05D004266 3.5e-20 101.7 54 94.4
CAN.G65.87 Capsicum annuum HOM05D003579 ORTHO05D004266 1.2e-17 93.2 54 88.9
Peaxi162Scf00643g00664 Petunia axillaris HOM05D003579 ORTHO05D004266 1.6e-17 92.8 70 71.4
Duzib205G0446 Durio zibethinus HOM05D003579 ORTHO05D004266 2.1e-17 92.4 76 65.8
Dinv07799 Davidia involucrata HOM05D003579 ORTHO05D004266 6.1e-17 90.9 60 75.0
PSO017G1464 Papaver somniferum HOM05D003579 ORTHO05D004266 1.0e-16 90.1 60 76.7
Cc04_g09210 Coffea canephora HOM05D003579 ORTHO05D004266 1.4e-16 89.7 60 73.3
Lj5A164G66 Lonicera japonica HOM05D003579 ORTHO05D004266 1.4e-16 89.7 60 71.7
Nn4g24545 Nelumbo nucifera HOM05D003579 ORTHO05D004266 1.4e-16 89.7 60 75.0
CSS0000253 Camellia sinensis var. sinensis HOM05D003579 ORTHO05D004266 1.8e-16 89.4 54 85.2
ATR0598G272 Amborella trichopoda HOM05D003579 ORTHO05D004266 3.0e-16 88.6 60 76.7
DCAR_011388 Daucus carota HOM05D003579 ORTHO05D004266 3.0e-16 88.6 60 70.0
Gohir.D07G065501 Gossypium hirsutum HOM05D003579 ORTHO05D004266 3.0e-16 88.6 60 75.0
PSO478G0806 Papaver somniferum HOM05D003579 ORTHO05D004266 3.0e-16 88.6 60 75.0
Gorai.001G069000 Gossypium raimondii HOM05D003579 ORTHO05D004266 4.0e-16 88.2 60 73.3
CiPaw.16G098300 Carya illinoinensis HOM05D003579 ORTHO05D004266 5.2e-16 87.8 60 76.7
Nn3g19567 Nelumbo nucifera HOM05D003579 ORTHO05D004266 5.2e-16 87.8 60 75.0
RcHm_v2.0_Chr7g0177761 Rosa chinensis HOM05D003579 ORTHO05D004266 5.2e-16 87.8 60 75.0
GSVIVG01012941001 Vitis vinifera HOM05D003579 ORTHO05D004266 5.2e-16 87.8 60 73.3
FvH4_5g17820 Fragaria vesca HOM05D003579 ORTHO05D004266 6.8e-16 87.4 60 73.3
FAN04G1919 Fragaria x ananassa HOM05D003579 ORTHO05D004266 6.8e-16 87.4 60 73.3
FAN08G1300 Fragaria x ananassa HOM05D003579 ORTHO05D004266 6.8e-16 87.4 60 73.3
FAN18G3127 Fragaria x ananassa HOM05D003579 ORTHO05D004266 6.8e-16 87.4 60 73.3
Gohir.A07G060800 Gossypium hirsutum HOM05D003579 ORTHO05D004266 6.8e-16 87.4 60 73.3
Oeu023525.2 Olea europaea HOM05D003579 ORTHO05D004266 6.8e-16 87.4 60 71.7
MD14G1240900 Malus domestica HOM05D003579 ORTHO05D004266 8.9e-16 87.0 60 71.7
Rhsim08G0128400 Rhododendron simsii HOM05D003579 ORTHO05D004266 8.9e-16 87.0 60 73.3
MD06G1234200 Malus domestica HOM05D003579 ORTHO05D004266 1.2e-15 86.7 60 71.7
vmacro17766 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 1.5e-15 86.3 60 71.7
Prupe.5G238700 Prunus persica HOM05D003579 ORTHO05D004266 2.0e-15 85.9 60 71.7
Thecc.03G066100 Theobroma cacao HOM05D003579 ORTHO05D004266 2.0e-15 85.9 60 73.3
Aqoxy3G00001 Aquilegia oxysepala HOM05D003579 ORTHO05D004266 3.4e-15 85.1 60 73.3
Manes.06G001700 Manihot esculenta HOM05D003579 ORTHO05D004266 3.4e-15 85.1 60 71.7
Actinidia34663 Actinidia chinensis HOM05D003579 ORTHO05D004266 4.4e-15 84.7 54 75.9
Gohir.A03G091600 Gossypium hirsutum HOM05D003579 ORTHO05D004266 4.4e-15 84.7 76 61.8
Gorai.005G134000 Gossypium raimondii HOM05D003579 ORTHO05D004266 4.4e-15 84.7 76 61.8
Duzib084G0133 Durio zibethinus HOM05D003579 ORTHO05D004266 5.8e-15 84.3 76 63.2
CANSAT56G2203 Cannabis sativa HOM05D003579 ORTHO05D004266 7.5e-15 84.0 60 71.7
Gohir.D02G120000 Gossypium hirsutum HOM05D003579 ORTHO05D004266 7.5e-15 84.0 60 71.7
PGR044G2375 Punica granatum HOM05D003579 ORTHO05D004266 7.5e-15 84.0 60 68.3
Sp3g15890 Schrenkiella parvula HOM05D003579 ORTHO05D004266 7.5e-15 84.0 76 57.9
COL.COLO4_24456 Corchorus olitorius HOM05D003579 ORTHO05D004266 9.8e-15 83.6 54 75.9
QL10p037085 Quercus lobata HOM05D003579 ORTHO05D004266 9.8e-15 83.6 54 75.9
Ciclev10019405m.g Citrus clementina HOM05D003579 ORTHO05D004266 1.3e-14 83.2 60 68.3
Potri.015G032500 Populus trichocarpa HOM05D003579 ORTHO05D004266 1.3e-14 83.2 60 71.7
TWI15G0294 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 1.3e-14 83.2 60 70.0
Oeu016195.1 Olea europaea HOM05D003579 ORTHO05D004266 1.7e-14 82.8 62 67.7
TWI60G0145 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 1.7e-14 82.8 60 70.0
BcaC07g37135 Brassica carinata HOM05D003579 ORTHO05D004266 2.2e-14 82.4 60 65.0
A08p04710 Brassica napus HOM05D003579 ORTHO05D004266 2.2e-14 82.4 60 66.7
BolC8t47313H Brassica oleracea HOM05D003579 ORTHO05D004266 2.2e-14 82.4 66 59.1
TAR028G0001 Trochodendron aralioides HOM05D003579 ORTHO05D004266 2.2e-14 82.4 60 70.0
arahy.Tifrunner.gnm1.ann1.SGC6ES Arachis hypogaea HOM05D003579 ORTHO05D004266 3.7e-14 81.6 60 68.3
Sabra15G0026700 Salix brachista HOM05D003579 ORTHO05D004266 3.7e-14 81.6 60 70.0
Os03g0719300 Oryza sativa ssp. japonica HOM05D003579 ORTHO05D004266 4.9e-14 81.3 60 68.3
CDE06G0014 Ceratophyllum demersum HOM05D003579 ORTHO05D004266 6.4e-14 80.9 54 77.8
SabraUnG0005900 Salix brachista HOM05D003579 ORTHO05D004266 6.4e-14 80.9 60 68.3
Sed0003427 Sechium edule HOM05D003579 ORTHO05D004266 6.4e-14 80.9 60 66.7
MSTRG.9359 Avicennia marina HOM05D003579 ORTHO05D004266 8.3e-14 80.5 60 68.3
CARHR038050 Cardamine hirsuta HOM05D003579 ORTHO05D004266 8.3e-14 80.5 60 63.3
CiPaw.15G149000 Carya illinoinensis HOM05D003579 ORTHO05D004266 8.3e-14 80.5 54 75.9
Potri.012G041100 Populus trichocarpa HOM05D003579 ORTHO05D004266 8.3e-14 80.5 60 68.3
PGR083G0897 Punica granatum HOM05D003579 ORTHO05D004266 8.3e-14 80.5 60 73.3
AL3G30930 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 1.1e-13 80.1 60 65.0
C08p05080 Brassica napus HOM05D003579 ORTHO05D004266 1.4e-13 79.7 60 63.3
BraA08t32501Z Brassica rapa HOM05D003579 ORTHO05D004266 1.4e-13 79.7 59 66.1
Thhalv10020350m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 1.4e-13 79.7 70 58.6
AT1G48430 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 1.8e-13 79.3 60 60.0
Sabra12G0028200 Salix brachista HOM05D003579 ORTHO05D004266 1.8e-13 79.3 60 66.7
SalBow1G2020 Salvia bowleyana HOM05D003579 ORTHO05D004266 1.8e-13 79.3 54 75.9
Atru.chr9.1578_Atru.chr9.1579 Acer truncatum HOM05D003579 ORTHO05D004266 3.2e-13 78.6 54 75.9
HanXRQChr03g0087091 Helianthus annuus HOM05D003579 ORTHO05D004266 3.2e-13 78.6 60 63.3
SEGI_32565 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 3.2e-13 78.6 53 73.6
AL1G55060 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 4.1e-13 78.2 60 60.0
Lalb_Chr24g0398301 Lupinus albus HOM05D003579 ORTHO05D004266 4.1e-13 78.2 60 68.3
AT3G17770 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 5.4e-13 77.8 60 61.7
CsaV3_1G004890 Cucumis sativus L. HOM05D003579 ORTHO05D004266 5.4e-13 77.8 60 65.0
A05p32070 Brassica napus HOM05D003579 ORTHO05D004266 7.0e-13 77.4 76 53.9
C05p48570 Brassica napus HOM05D003579 ORTHO05D004266 7.0e-13 77.4 76 53.9
BolC5t33593H Brassica oleracea HOM05D003579 ORTHO05D004266 7.0e-13 77.4 76 53.9
SGA_v2.0_scaffold74G24677 Striga asiatica HOM05D003579 ORTHO05D004266 9.2e-13 77.0 60 63.3
Carub.0001s3756 Capsella rubella HOM05D003579 ORTHO05D004266 1.2e-12 76.6 60 60.0
Eucgr.H00571 Eucalyptus grandis HOM05D003579 ORTHO05D004266 1.2e-12 76.6 60 68.3
CARHR093110 Cardamine hirsuta HOM05D003579 ORTHO05D004266 1.6e-12 76.3 60 60.0
BcaNung05880 Brassica carinata HOM05D003579 ORTHO05D004266 2.0e-12 75.9 76 52.6
Carub.0003s1749 Capsella rubella HOM05D003579 ORTHO05D004266 2.0e-12 75.9 60 58.3
AUR62038599 Chenopodium quinoa HOM05D003579 ORTHO05D004266 2.0e-12 75.9 60 66.7
MELO3C001926.2 Cucumis melo HOM05D003579 ORTHO05D004266 2.0e-12 75.9 60 63.3
ECA233G2231 Erigeron canadensis HOM05D003579 ORTHO05D004266 2.0e-12 75.9 60 63.3
Thhalv10011337m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 2.0e-12 75.9 60 58.3
SMO230G0064 Selaginella moellendorffii HOM05D003579 ORTHO05D004266 2.7e-12 75.5 60 61.7
unitig_736.g22827 Utricularia gibba HOM05D003579 ORTHO05D004266 3.5e-12 75.1 60 66.7
Aa31LG8G4650 Aethionema arabicum HOM05D003579 ORTHO05D004266 4.6e-12 74.7 60 60.0
Migut.D01207 Erythranthe guttata HOM05D003579 ORTHO05D004266 7.8e-12 73.9 60 65.0
Lsat_1_v5_gn_8_1741 Lactuca sativa HOM05D003579 ORTHO05D004266 7.8e-12 73.9 62 61.3
TPR.G31707 Trifolium pratense HOM05D003579 ORTHO05D004266 1.0e-11 73.6 54 70.4
Hund22317 Selenicereus undatus HOM05D003579 ORTHO05D004266 1.3e-11 73.2 60 65.0
VMungo0464G0093 Vigna mungo HOM05D003579 ORTHO05D004266 1.3e-11 73.2 54 70.4
AUR62034013 Chenopodium quinoa HOM05D003579 ORTHO05D004266 1.7e-11 72.8 60 65.0
Glyma.09G170600 Glycine max HOM05D003579 ORTHO05D004266 1.7e-11 72.8 60 63.3
Phvul.004G146300 Phaseolus vulgaris HOM05D003579 ORTHO05D004266 2.3e-11 72.4 54 72.2
Medtr6g073003 Medicago truncatula HOM05D003579 ORTHO05D004266 3.9e-11 71.6 54 64.8
Psat1g124800 Pisum sativum HOM05D003579 ORTHO05D004266 3.9e-11 71.6 54 68.5
EL10Ac8g19495 Beta vulgaris HOM05D003579 ORTHO05D004266 6.6e-11 70.9 60 65.0
BraA05t21815Z Brassica rapa HOM05D003579 ORTHO05D004266 6.6e-11 70.9 77 51.9
BraA05t21823Z Brassica rapa HOM05D003579 ORTHO05D004266 6.6e-11 70.9 77 51.9
HPP92_013127 Vanilla planifolia HOM05D003579 ORTHO05D004266 6.6e-11 70.9 60 63.3
HPP92_013151 Vanilla planifolia HOM05D003579 ORTHO05D004266 6.6e-11 70.9 60 63.3
Ca_20292_v3 Cicer arietinum L. HOM05D003579 ORTHO05D004266 8.6e-11 70.5 54 70.4
Glyma.07G107100 Glycine max HOM05D003579 ORTHO05D004266 8.6e-11 70.5 54 68.5
CANSAT56G3429 Cannabis sativa HOM05D003579 ORTHO05D004266 1.1e-10 70.1 60 63.3
FAN13G2047 Fragaria x ananassa HOM05D003579 ORTHO05D004266 1.1e-10 70.1 81 53.1
C05p44830 Brassica napus HOM05D003579 ORTHO05D004266 1.9e-10 69.3 63 55.6
BolC5t33211H Brassica oleracea HOM05D003579 ORTHO05D004266 4.3e-10 68.2 77 50.6
Sp1g35380 Schrenkiella parvula HOM05D003579 ORTHO05D004266 7.3e-10 67.4 60 58.3
BcaB04g17425 Brassica carinata HOM05D003579 ORTHO05D004266 1.2e-09 66.6 52 61.5
arahy.Tifrunner.gnm1.ann1.7TIF1A Arachis hypogaea HOM05D003579 ORTHO05D004266 2.8e-09 65.5 60 60.0
arahy.Tifrunner.gnm1.ann1.N38075 Arachis hypogaea HOM05D003579 ORTHO05D004266 2.8e-09 65.5 60 60.0
Sc10g0008960 Simmondsia chinensis HOM05D003579 ORTHO05D004266 2.8e-09 65.5 60 60.0
Pp3c4_4070 Physcomitrium patens HOM05D003579 ORTHO05D004266 4.7e-09 64.7 54 66.7
Eucgr.K02291 Eucalyptus grandis HOM05D003579 ORTHO05D004266 6.2e-09 64.3 60 58.3
Lj2g0001753 Lotus japonicus HOM05D003579 ORTHO05D004266 1.4e-08 63.2 54 63.0
Lalb_Chr14g0370481 Lupinus albus HOM05D003579 ORTHO05D004266 1.4e-08 63.2 59 59.3
Pp3c10_19150 Physcomitrium patens HOM05D003579 ORTHO05D004266 3.1e-08 62.0 82 50.0
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05D003579 ORTHO05D004266 4.0e-08 61.6 83 48.2
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 4.0e-08 61.6 54 61.1
Psat0s1042g0080 Pisum sativum HOM05D003579 ORTHO05D004266 6.8e-08 60.8 54 59.3
Mapoly0125s0006 Marchantia polymorpha HOM05D003579 ORTHO05D004266 2.6e-07 58.9 54 57.4
BraA05t22036Z Brassica rapa HOM05D003579 ORTHO05D004266 3.4e-07 58.5 103 39.8
MBI13_g21695_MAGBIO Magnolia biondii HOM05D003579 ORTHO05D004266 4.4e-07 58.2 87 44.8
Hma1.2p1_0471F.1_g159320 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 5.8e-07 57.8 36 77.8
SGA_v2.0_scaffold40G15653 Striga asiatica HOM05D003579 ORTHO05D004266 1.7e-06 56.2 76 48.7


User provided reference genes

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