Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 4.7e-183 644.4 330 100.0
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 6.6e-145 517.7 379 73.1
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 1.8e-142 509.6 270 93.0
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 7.8e-130 467.6 327 71.9
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 3.9e-129 465.3 323 72.8
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 4.7e-127 458.4 325 76.6
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 8.4e-124 447.6 320 70.6
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 2.7e-122 442.6 326 69.6
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 8.7e-121 437.6 316 67.1
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 1.9e-120 436.4 328 67.4
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 2.1e-119 433.0 283 73.9
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 3.6e-119 432.2 296 70.6
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 3.1e-118 429.1 322 66.8
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 6.9e-118 427.9 302 68.5
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 2.9e-116 422.5 301 68.1
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 3.8e-116 422.2 309 68.6
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 1.9e-115 419.9 326 63.8
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 4.2e-115 418.7 318 64.8
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 4.2e-115 418.7 324 65.7
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 1.6e-114 416.8 301 68.1
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 1.6e-114 416.8 325 63.4
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 2.7e-114 416.0 326 63.8
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 3.5e-114 415.6 324 66.0
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 2.3e-113 412.9 294 69.4
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 8.7e-113 411.0 321 63.6
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 3.3e-112 409.1 306 65.4
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 4.3e-112 408.7 310 65.2
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 4.3e-112 408.7 310 64.5
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 7.3e-112 407.9 326 63.5
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 1.3e-111 407.1 301 66.8
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 1.3e-111 407.1 208 98.6
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 3.4e-109 399.1 300 62.7
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 9.9e-109 397.5 303 65.7
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 1.3e-108 397.1 307 63.5
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 1.7e-108 396.7 315 65.1
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 4.9e-108 395.2 309 64.4
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 1.1e-107 394.0 324 63.0
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 1.4e-107 393.7 300 61.3
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 2.4e-107 392.9 321 61.4
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 7.1e-107 391.3 305 63.9
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 1.6e-106 390.2 298 64.1
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 2.7e-106 389.4 310 63.5
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 3.0e-105 386.0 294 63.9
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 3.0e-105 386.0 323 59.4
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 5.1e-105 385.2 290 63.1
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 1.5e-104 383.6 290 68.3
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 3.3e-104 382.5 310 61.3
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 1.6e-103 380.2 299 62.2
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 2.8e-103 379.4 316 62.0
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 4.8e-103 378.6 302 59.9
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 1.8e-102 376.7 331 59.5
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 3.1e-102 375.9 291 60.5
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 4.0e-102 375.6 327 57.8
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 5.3e-102 375.2 323 57.0
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 5.3e-102 375.2 287 64.5
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 3.4e-101 372.5 273 67.8
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 5.8e-101 371.7 323 57.0
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 7.6e-101 371.3 323 56.7
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 1.0e-100 370.9 326 57.7
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 3.8e-100 369.0 326 58.0
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 8.4e-100 367.9 326 56.7
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 5.5e-99 365.2 326 56.1
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 1.2e-98 364.0 326 56.1
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 8.7e-97 357.8 318 56.9
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 3.3e-96 355.9 318 56.6
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 3.3e-96 355.9 303 56.8
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 9.6e-96 354.4 318 56.3
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 1.3e-95 354.0 300 58.3
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 3.7e-95 352.4 298 58.4
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 5.0e-92 342.0 272 63.6
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 1.1e-91 340.9 326 53.1
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 7.1e-91 338.2 328 57.0
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 1.8e-89 333.6 293 59.0
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 7.4e-88 328.2 326 54.3
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 2.8e-87 326.2 271 60.1
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 2.8e-87 326.2 313 57.2
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 6.3e-87 325.1 325 52.6
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 5.5e-83 312.0 334 50.6
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 6.7e-81 305.1 359 51.3
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 9.1e-78 294.7 203 70.0
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 4.7e-74 282.3 212 67.0
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 5.1e-73 278.9 205 64.9
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 5.7e-72 275.4 210 62.4
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 8.2e-71 271.6 270 54.8
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 1.8e-70 270.4 327 42.2
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 9.1e-70 268.1 205 61.5
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 1.9e-67 260.4 242 57.9
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 6.1e-66 255.4 256 53.1
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 3.5e-61 239.6 167 76.0
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 4.7e-58 229.2 123 95.1
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 7.7e-53 211.8 292 41.4
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 9.4e-51 204.9 166 62.0
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 8.0e-50 201.8 288 43.8
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 8.8e-49 198.4 122 75.4
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 8.3e-47 191.8 295 41.0
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 8.3e-47 191.8 325 39.4
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 3.3e-43 179.9 97 90.7
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 3.3e-43 179.9 211 44.1
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 5.5e-43 179.1 94 95.7
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 1.3e-39 167.9 110 71.8
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 1.7e-39 167.5 126 62.7
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 5.6e-35 152.5 300 33.3
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 6.4e-31 139.0 121 60.3
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 6.8e-25 119.0 80 58.8
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 2.6e-24 117.1 178 42.1
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 2.6e-24 117.1 80 66.2
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 1.4e-22 111.3 285 28.4
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 2.4e-22 110.5 89 60.7
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 7.1e-22 109.0 89 59.6
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 1.2e-21 108.2 162 32.7
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 1.4e-17 94.7 65 66.2
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 1.3e-15 88.2 67 50.7
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 2.5e-11 73.9 220 28.2
FAN20G2921 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.8e-09 67.8 152 32.9
FAN20G2925 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.8e-09 67.8 152 32.9
FAN24G0543 Fragaria x ananassa HOM05D006784 ORTHO05D008508 8.9e-09 65.5 152 32.2
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 7.6e-08 62.4 45 66.7
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 3.8e-07 60.1 41 68.3
FAN20G2451 Fragaria x ananassa HOM05D009889 ORTHO05D003215 6.4e-07 59.3 43 67.4


User provided reference genes

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