Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 1.0e-100 370.2 201 100.0
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.1e-99 366.7 201 95.5
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 5.3e-89 331.3 201 90.5
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.2e-78 295.4 201 78.1
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 1.2e-77 293.5 209 80.4
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 6.1e-77 291.2 201 74.6
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 4.0e-68 261.9 201 70.6
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 4.0e-68 261.9 201 70.6
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 5.2e-68 261.5 201 68.7
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.7e-66 256.5 208 68.8
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 2.2e-66 256.1 177 74.0
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 4.8e-66 255.0 201 67.2
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 8.3e-66 254.2 201 67.2
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 5.4e-65 251.5 193 70.5
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 5.4e-65 251.5 176 72.7
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.6e-64 250.0 193 71.0
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 2.7e-64 249.2 220 63.2
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 3.5e-64 248.8 203 66.0
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 5.9e-64 248.1 191 71.2
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.3e-63 246.9 198 68.7
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 1.3e-63 246.9 199 66.8
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 3.8e-63 245.4 192 67.7
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 1.1e-62 243.8 193 68.9
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 1.9e-62 243.0 193 68.4
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 3.3e-62 242.3 193 67.9
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 7.2e-62 241.1 193 65.8
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 9.5e-62 240.7 198 66.2
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.6e-61 240.0 191 69.1
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 1.6e-61 240.0 163 73.0
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 2.1e-61 239.6 189 68.8
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 2.8e-61 239.2 193 65.3
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 2.8e-61 239.2 164 73.8
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 2.8e-61 239.2 164 73.8
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 3.6e-61 238.8 192 66.1
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 4.7e-61 238.4 191 67.5
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 4.7e-61 238.4 191 66.0
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 6.1e-61 238.0 191 70.2
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 8.0e-61 237.7 191 69.6
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.8e-60 236.5 229 58.5
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 1.8e-60 236.5 155 75.5
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 1.8e-60 236.5 155 75.5
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 1.8e-60 236.5 190 69.5
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 3.0e-60 235.7 159 74.2
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 5.2e-60 235.0 164 72.6
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 6.8e-60 234.6 200 62.0
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 6.8e-60 234.6 193 66.8
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 8.9e-60 234.2 203 64.0
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 1.2e-59 233.8 165 71.5
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.2e-59 233.8 159 74.2
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 1.5e-59 233.4 193 64.8
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 1.5e-59 233.4 190 67.4
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 2.0e-59 233.0 167 69.5
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 3.4e-59 232.3 162 72.8
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 3.4e-59 232.3 167 71.3
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 4.4e-59 231.9 166 74.1
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 7.5e-59 231.1 200 63.0
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 7.5e-59 231.1 193 65.8
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 1.3e-58 230.3 190 66.3
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.3e-58 230.3 197 64.0
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 1.7e-58 229.9 153 77.8
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.2e-58 229.6 197 63.5
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 2.8e-58 229.2 172 69.8
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 2.8e-58 229.2 172 69.8
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 2.8e-58 229.2 190 68.4
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 3.7e-58 228.8 170 71.2
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.7e-58 228.8 190 66.3
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 4.9e-58 228.4 190 61.6
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 4.9e-58 228.4 165 70.9
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 6.3e-58 228.0 191 63.9
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 6.3e-58 228.0 191 64.9
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 8.3e-58 227.6 172 69.2
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 8.3e-58 227.6 172 69.2
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 8.3e-58 227.6 172 69.2
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 1.1e-57 227.3 154 76.0
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 1.1e-57 227.3 190 64.7
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.1e-57 227.3 190 65.8
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.1e-57 227.3 190 65.8
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 1.1e-57 227.3 193 64.2
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.8e-57 226.5 162 71.6
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 1.8e-57 226.5 165 69.7
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.8e-57 226.5 176 67.6
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 4.1e-57 225.3 164 70.7
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 5.4e-57 224.9 160 71.9
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 7.0e-57 224.6 191 63.4
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 9.2e-57 224.2 152 75.0
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 1.6e-56 223.4 190 65.8
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 2.7e-56 222.6 185 67.0
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 3.5e-56 222.2 193 62.2
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 3.5e-56 222.2 195 61.0
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 3.5e-56 222.2 166 71.1
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 3.5e-56 222.2 193 61.7
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 5.9e-56 221.5 171 68.4
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 5.9e-56 221.5 164 69.5
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 1.3e-55 220.3 165 69.7
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 2.9e-55 219.2 199 61.3
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 8.6e-55 217.6 147 76.2
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 8.6e-55 217.6 195 56.9
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 1.1e-54 217.2 186 64.5
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 1.5e-54 216.9 188 63.3
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 1.9e-54 216.5 169 68.0
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.5e-54 216.1 167 69.5
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 5.6e-54 214.9 166 69.9
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.6e-53 213.4 190 62.1
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 2.8e-53 212.6 175 65.1
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 2.8e-53 212.6 261 53.3
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 6.1e-53 211.5 193 59.6
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 8.0e-53 211.1 170 65.3
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.4e-52 210.3 190 58.9
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 1.8e-52 209.9 165 60.6
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 8.9e-52 207.6 193 57.5
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 2.6e-51 206.1 193 59.1
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 2.6e-51 206.1 169 65.1
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 3.4e-51 205.7 191 58.6
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 5.8e-51 204.9 157 66.2
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 7.5e-51 204.5 158 65.8
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 7.5e-51 204.5 199 58.3
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 9.8e-51 204.1 191 58.6
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.3e-50 203.8 160 65.0
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.3e-50 203.8 160 65.0
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 1.7e-50 203.4 154 69.5
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 1.7e-50 203.4 132 75.8
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.7e-50 203.4 160 64.4
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 2.9e-50 202.6 141 72.3
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 3.7e-50 202.2 176 63.6
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 7.0e-49 198.0 139 73.4
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 7.0e-49 198.0 154 66.2
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 1.2e-48 197.2 153 63.4
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 2.3e-47 193.0 158 59.5
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 6.6e-47 191.4 120 76.7
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 8.6e-47 191.0 122 78.7
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 1.9e-46 189.9 121 79.3
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 9.5e-46 187.6 160 56.9
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 2.1e-45 186.4 121 73.6
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 8.0e-45 184.5 120 77.5
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 2.3e-44 183.0 121 76.9
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 5.2e-44 181.8 121 75.2
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 2.6e-43 179.5 119 76.5
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.1e-41 174.1 130 64.6
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.4e-41 173.7 157 54.8
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 4.1e-41 172.2 147 64.6
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 3.5e-40 169.1 162 51.9
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 7.8e-40 167.9 148 64.9
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 1.3e-39 167.2 139 69.1
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 3.3e-38 162.5 145 56.6
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 3.3e-38 162.5 163 51.5
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 6.2e-37 158.3 116 66.4
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 3.1e-36 156.0 140 57.1
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 3.1e-36 156.0 164 49.4
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 5.2e-36 155.2 140 53.6
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 6.8e-36 154.8 146 61.0
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 8.9e-36 154.5 126 61.1
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 1.3e-31 140.6 151 47.7
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 1.7e-31 140.2 86 80.2
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 1.1e-28 131.0 131 53.4
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.0e-23 114.4 99 60.6
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.5e-22 110.5 113 52.2
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.5e-19 100.5 154 44.2
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 3.8e-18 95.9 125 45.6
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.2e-11 74.3 78 46.2
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 2.0e-11 73.6 53 67.9
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 2.0e-11 73.6 53 67.9
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 9.9e-11 71.2 44 75.0
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 9.9e-11 71.2 54 64.8
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 4.2e-09 65.9 46 69.6
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 3.5e-08 62.8 46 60.9


User provided reference genes

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