Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 1.3e-70 269.6 138 100.0
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 2.9e-25 119.0 62 95.2
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 2.9e-25 119.0 62 95.2
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 2.9e-25 119.0 62 95.2
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 8.3e-25 117.5 62 96.8
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 1.1e-24 117.1 62 95.2
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 2.4e-24 115.9 62 95.2
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 5.4e-24 114.8 62 93.5
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 1.5e-21 106.7 62 87.1
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 2.1e-20 102.8 64 84.4
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 4.4e-18 95.1 64 78.1
Sopen08g021590 Solanum pennellii HOM05D007931 ORTHO05D010331 7.5e-18 94.4 77 66.2
Sopen10g023470 Solanum pennellii HOM05D007931 ORTHO05D010331 6.4e-17 91.3 75 62.7
Solyc08g067650.2 Solanum lycopersicum HOM05D007931 ORTHO05D010331 1.1e-16 90.5 57 82.5
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.9e-16 89.7 71 70.4
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.4e-16 89.4 65 73.8
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.4e-16 89.4 65 73.8
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 2.4e-16 89.4 62 74.2
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 9.2e-16 87.4 65 72.3
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.7e-15 85.9 71 67.6
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 3.5e-15 85.5 62 72.6
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 3.5e-15 85.5 71 63.4
Solyc02g032630.2 Solanum lycopersicum HOM05D007931 ORTHO05D010331 3.5e-15 85.5 79 59.5
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 4.6e-15 85.1 61 72.1
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 6.0e-15 84.7 61 73.8
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 3.0e-14 82.4 66 66.7
Nitab4.5_0005843g0030 Nicotiana tabacum HOM05D007931 ORTHO05D010331 3.9e-14 82.0 74 58.1
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 5.0e-14 81.6 66 65.2
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 8.6e-14 80.9 66 68.2
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.5e-13 79.3 67 62.7
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 3.3e-13 79.0 62 66.1
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 4.3e-13 78.6 60 66.7
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 5.6e-13 78.2 61 63.9
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 7.3e-13 77.8 66 66.7
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 9.5e-13 77.4 66 65.2
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 9.5e-13 77.4 61 63.9
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 2.1e-12 76.3 67 61.2
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 2.8e-12 75.9 67 58.2
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 6.2e-12 74.7 66 62.1
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 8.1e-12 74.3 61 67.2
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 1.1e-11 73.9 69 59.4
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 1.1e-11 73.9 72 58.3
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 2.3e-11 72.8 60 66.7
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 2.3e-11 72.8 67 62.7
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 2.3e-11 72.8 60 65.0
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 3.1e-11 72.4 61 65.6
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 3.1e-11 72.4 67 61.2
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 3.1e-11 72.4 61 62.3
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 5.2e-11 71.6 67 61.2
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 5.2e-11 71.6 65 60.0
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 6.8e-11 71.2 67 59.7
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 6.8e-11 71.2 61 60.7
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 8.9e-11 70.9 66 60.6
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 1.2e-10 70.5 67 55.2
PGSC0003DMG400030025 Solanum tuberosum HOM05D007931 ORTHO05D010331 1.2e-10 70.5 74 50.0
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 1.5e-10 70.1 61 59.0
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.0e-10 69.7 61 59.0
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 2.0e-10 69.7 61 62.3
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.6e-10 69.3 61 59.0
Nitab4.5_0001297g0070 Nicotiana tabacum HOM05D007931 ORTHO05D010331 3.4e-10 68.9 64 57.8
Nitab4.5_0000075g0220 Nicotiana tabacum HOM05D007931 ORTHO05D010331 4.4e-10 68.6 74 51.4
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 7.5e-10 67.8 61 57.4
Nitab4.5_0003161g0030 Nicotiana tabacum HOM05D007931 ORTHO05D010331 1.3e-09 67.0 74 45.9
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.7e-09 66.6 61 60.7
Nitab4.5_0001238g0060 Nicotiana tabacum HOM05D007931 ORTHO05D010331 2.2e-09 66.2 58 60.3
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 2.2e-09 66.2 60 58.3
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 2.9e-09 65.9 62 58.1
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 3.7e-09 65.5 64 57.8
Nitab4.5_0005181g0020 Nicotiana tabacum HOM05D007931 ORTHO05D010331 6.4e-09 64.7 85 43.5
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 6.4e-09 64.7 71 57.7
PGSC0003DMG400014334 Solanum tuberosum HOM05D007931 ORTHO05D010331 6.4e-09 64.7 57 57.9
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 8.3e-09 64.3 60 60.0
Nitab4.5_0008257g0030 Nicotiana tabacum HOM05D007931 ORTHO05D010331 8.3e-09 64.3 74 47.3
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 1.4e-08 63.5 75 50.7
Nitab4.5_0000128g0350 Nicotiana tabacum HOM05D007931 ORTHO05D010331 1.9e-08 63.2 76 40.8
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 2.4e-08 62.8 73 45.2
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 2.4e-08 62.8 60 58.3
Nitab4.5_0002837g0060 Nicotiana tabacum HOM05D007931 ORTHO05D010331 2.4e-08 62.8 85 42.4
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 3.2e-08 62.4 75 49.3
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 3.2e-08 62.4 75 49.3
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 3.2e-08 62.4 62 58.1
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 3.2e-08 62.4 63 58.7
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 3.2e-08 62.4 63 58.7
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 4.1e-08 62.0 65 60.0
Nitab4.5_0001840g0090 Nicotiana tabacum HOM05D007931 ORTHO05D010331 4.1e-08 62.0 85 42.4
Nitab4.5_0002433g0100 Nicotiana tabacum HOM05D007931 ORTHO05D010331 4.1e-08 62.0 113 37.2
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 7.1e-08 61.2 75 46.7
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 7.1e-08 61.2 60 55.0
Nitab4.5_0002199g0040 Nicotiana tabacum HOM05D007931 ORTHO05D010331 7.1e-08 61.2 74 40.5
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 7.1e-08 61.2 60 53.3
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 9.2e-08 60.8 75 49.3
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 9.2e-08 60.8 75 49.3
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.2e-07 60.5 59 59.3
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 1.2e-07 60.5 62 56.5
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 1.6e-07 60.1 71 47.9
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 1.6e-07 60.1 67 50.7
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 2.1e-07 59.7 62 53.2
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 2.7e-07 59.3 60 55.0
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 2.7e-07 59.3 60 55.0
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 2.7e-07 59.3 60 55.0
Nitab4.5_0013264g0010 Nicotiana tabacum HOM05D007931 ORTHO05D010331 3.5e-07 58.9 113 35.4
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 4.6e-07 58.5 62 56.5
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 4.6e-07 58.5 60 53.3
Sopen02g028840 Solanum pennellii HOM05D007931 ORTHO05D010331 4.6e-07 58.5 64 48.4
Solyc11g068410.1 Solanum lycopersicum HOM05D007931 ORTHO05D010331 7.8e-07 57.8 74 41.9
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 1.0e-06 57.4 65 52.3
Nitab4.5_0003063g0030 Nicotiana tabacum HOM05D007931 ORTHO05D010331 1.0e-06 57.4 113 34.5
Nitab4.5_0000265g0090 Nicotiana tabacum HOM05D007931 ORTHO05D010331 1.3e-06 57.0 74 41.9
Peaxi162Scf00457g00055 Petunia axillaris HOM05D007931 ORTHO05D010331 1.7e-06 56.6 73 45.2
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 3.0e-06 55.8 60 48.3
Nitab4.5_0008942g0060 Nicotiana tabacum HOM05D007931 ORTHO05D010331 3.0e-06 55.8 64 48.4
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 3.0e-06 55.8 60 51.7
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 5.1e-06 55.1 61 49.2
Nitab4.5_0003766g0040 Nicotiana tabacum HOM05D007931 ORTHO05D010331 5.1e-06 55.1 64 48.4
Nitab4.5_0007096g0060 Nicotiana tabacum HOM05D007931 ORTHO05D010331 5.1e-06 55.1 68 47.1
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 5.1e-06 55.1 62 53.2
PGSC0003DMG400030140 Solanum tuberosum HOM05D007931 ORTHO05D010331 5.1e-06 55.1 60 48.3
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 8.6e-06 54.3 73 42.5
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 8.6e-06 54.3 61 54.1
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 8.6e-06 54.3 62 53.2
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 8.6e-06 54.3 62 53.2


User provided reference genes

Program Settings