Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g020210 Solanum pennellii HOM05D000963 ORTHO05D013225 2.7e-88 328.6 156 100.0
arahy.Tifrunner.gnm1.ann1.W1SKJ5 Arachis hypogaea HOM05D000963 ORTHO05D013225 5.1e-47 191.4 121 78.5
Medtr5g080940 Medicago truncatula HOM05D000963 ORTHO05D004715 1.3e-39 166.8 140 62.9
Sabra11G0069300 Salix brachista HOM05D000963 ORTHO05D004715 6.7e-39 164.5 92 87.0
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 1.1e-38 163.7 90 86.7
SEGI_01254 Sequoiadendron giganteum HOM05D000963 ORTHO05D010073 1.9e-38 162.9 120 70.0
Sc25g0002020 Simmondsia chinensis HOM05D000963 ORTHO05D004715 4.3e-38 161.8 88 88.6
Medtr4g451295 Medicago truncatula HOM05D000963 ORTHO05D010073 1.1e-36 157.1 87 86.2
FAN13G1378 Fragaria x ananassa HOM05D000963 ORTHO05D010073 2.9e-34 149.1 91 78.0
Gohir.A04G039240 Gossypium hirsutum HOM05D000963 ORTHO05D010073 3.8e-34 148.7 79 88.6
Gohir.1Z056500 Gossypium hirsutum HOM05D000963 ORTHO05D010073 1.1e-33 147.1 79 87.3
Gohir.1Z049892 Gossypium hirsutum HOM05D000963 ORTHO05D010073 5.1e-31 138.3 68 92.6
arahy.Tifrunner.gnm1.ann1.F7VFKS Arachis hypogaea HOM05D000963 ORTHO05D010073 1.5e-30 136.7 81 84.0
EL10Ac4g08799 Beta vulgaris HOM05D000963 ORTHO05D010073 4.8e-29 131.7 76 80.3
Gorai.007G326100 Gossypium raimondii HOM05D000963 ORTHO05D010073 6.3e-29 131.3 72 87.5
Gohir.D04G096660 Gossypium hirsutum HOM05D000963 ORTHO05D010073 1.1e-28 130.6 79 78.5
Hma1.2p1_0431F.1_g151580 Hydrangea macrophylla HOM05D000963 ORTHO05D010073 1.4e-28 130.2 79 79.7
LjContig00319g0016523 Lotus japonicus HOM05D000963 ORTHO05D010073 1.2e-27 127.1 108 63.0
Medtr4g006070 Medicago truncatula HOM05D000963 ORTHO05D010073 5.0e-26 121.7 83 72.3
Sed0028031 Sechium edule HOM05D000963 ORTHO05D010073 4.7e-24 115.2 111 61.3
Sed0006422 Sechium edule HOM05D000963 ORTHO05D004715 7.9e-24 114.4 68 82.4
Sed0011513 Sechium edule HOM05D000963 ORTHO05D004715 7.9e-24 114.4 68 82.4
Sed0001563 Sechium edule HOM05D000963 ORTHO05D010073 1.0e-23 114.0 94 66.0
arahy.Tifrunner.gnm1.ann1.IG3D37 Arachis hypogaea HOM05D000963 ORTHO05D010073 1.8e-23 113.2 77 76.6
arahy.Tifrunner.gnm1.ann1.H38MEV Arachis hypogaea HOM05D000963 ORTHO05D010073 3.9e-23 112.1 93 65.6
Gohir.A02G134101 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.5e-22 110.2 67 82.1
Gohir.A12G138580 Gossypium hirsutum HOM05D000963 ORTHO05D010073 1.5e-22 110.2 88 65.9
Gorai.011G106300 Gossypium raimondii HOM05D000963 ORTHO05D010073 2.6e-22 109.4 89 64.0
SEGI_39281 Sequoiadendron giganteum HOM05D000963 ORTHO05D010073 2.6e-22 109.4 66 83.3
arahy.Tifrunner.gnm1.ann1.AKG7GD Arachis hypogaea HOM05D000963 ORTHO05D010073 3.7e-21 105.5 77 70.1
arahy.Tifrunner.gnm1.ann1.V5YKW3 Arachis hypogaea HOM05D000963 ORTHO05D010073 3.7e-21 105.5 77 70.1
arahy.Tifrunner.gnm1.ann1.LW54SX Arachis hypogaea HOM05D000963 ORTHO05D010073 9.1e-20 100.9 77 68.8
arahy.Tifrunner.gnm1.ann1.0FXL97 Arachis hypogaea HOM05D000963 ORTHO05D010073 5.9e-19 98.2 53 88.7
CDE02G3457 Ceratophyllum demersum HOM05D000963 ORTHO05D010073 5.9e-19 98.2 53 88.7
QL10p017078 Quercus lobata HOM05D000963 ORTHO05D010073 5.9e-19 98.2 53 88.7
unitig_91.g26521 Utricularia gibba HOM05D000963 ORTHO05D010201 5.9e-19 98.2 53 88.7
arahy.Tifrunner.gnm1.ann1.WPV0UJ Arachis hypogaea HOM05D000963 ORTHO05D010073 2.2e-18 96.3 53 86.8
Medtr1g039020 Medicago truncatula HOM05D000963 ORTHO05D010073 8.5e-18 94.4 52 84.6
arahy.Tifrunner.gnm1.ann1.EF1F4B Arachis hypogaea HOM05D000963 ORTHO05D010073 1.1e-17 94.0 110 51.8
Phvul.002G181700 Phaseolus vulgaris HOM05D000963 ORTHO05D010073 1.1e-17 94.0 73 64.4
Migut.D01381 Erythranthe guttata HOM05D000963 ORTHO05D010073 1.4e-17 93.6 46 91.3
Gorai.009G238500 Gossypium raimondii HOM05D000963 ORTHO05D010073 1.9e-17 93.2 79 62.0
Medtr4g076920 Medicago truncatula HOM05D008922 ORTHO05D010978 7.2e-17 91.3 46 93.5
TPR.G13983 Trifolium pratense HOM05D000963 ORTHO05D010073 1.8e-15 86.7 55 76.4
TPR.G21727 Trifolium pratense HOM05D012548 ORTHO05D013225 8.8e-15 84.3 96 52.1
arahy.Tifrunner.gnm1.ann1.BA1T4G Arachis hypogaea HOM05D000963 ORTHO05D004715 4.4e-14 82.0 50 78.0
Gorai.005G170500 Gossypium raimondii HOM05D000963 ORTHO05D010073 1.3e-13 80.5 63 66.7
TPR.G7250 Trifolium pratense HOM05D000963 ORTHO05D026921 8.2e-13 77.8 43 83.7
Sc21g0003830 Simmondsia chinensis HOM05D000963 ORTHO05D013492 9.1e-12 74.3 37 94.6
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 1.6e-11 73.6 100 43.0
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 1.6e-11 73.6 100 43.0
Gohir.D03G074976 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.1e-09 67.4 62 61.3
SGA_v2.0_scaffold222G42797 Striga asiatica HOM05D000963 ORTHO05D010073 3.2e-09 65.9 67 56.7
BNapus_Darmor_BZH_scaffold_234p00110 Brassica napus HOM05D009256 ORTHO05D011704 5.5e-09 65.1 121 38.8
BraSC77t46657Z Brassica rapa HOM05D009256 ORTHO05D011704 5.5e-09 65.1 121 38.8
Oeu029257.1 Olea europaea HOM05D000963 ORTHO05D010073 5.5e-09 65.1 43 74.4
arahy.Tifrunner.gnm1.ann1.QZF0BL Arachis hypogaea HOM05D009256 ORTHO05D011704 2.1e-08 63.2 88 42.0
arahy.Tifrunner.gnm1.ann1.3JL12K Arachis hypogaea HOM05D000963 ORTHO05D010073 4.7e-08 62.0 35 82.9
arahy.Tifrunner.gnm1.ann1.9ZA4TL Arachis hypogaea HOM05D000963 ORTHO05D010073 4.7e-08 62.0 35 82.9
arahy.Tifrunner.gnm1.ann1.MCAP06 Arachis hypogaea HOM05D000963 ORTHO05D010073 4.7e-08 62.0 35 82.9
arahy.Tifrunner.gnm1.ann1.WH3GKX Arachis hypogaea HOM05D009256 ORTHO05D011704 4.7e-08 62.0 87 42.5
Lsat_1_v5_gn_0_47661 Lactuca sativa HOM05D000963 ORTHO05D010073 4.7e-08 62.0 35 82.9
Lsat_1_v5_gn_2_97101 Lactuca sativa HOM05D000963 ORTHO05D010073 4.7e-08 62.0 35 82.9
Lsat_1_v5_gn_6_94240 Lactuca sativa HOM05D000963 ORTHO05D010073 4.7e-08 62.0 35 82.9
Lsat_1_v5_gn_8_139860 Lactuca sativa HOM05D000963 ORTHO05D010073 4.7e-08 62.0 35 82.9
arahy.Tifrunner.gnm1.ann1.Q2LPLX Arachis hypogaea HOM05D009256 ORTHO05D011704 6.1e-08 61.6 83 43.4
arahy.Tifrunner.gnm1.ann1.V5LEJ9 Arachis hypogaea HOM05D009256 ORTHO05D011704 6.1e-08 61.6 83 43.4
TPR.G11370 Trifolium pratense HOM05D009256 ORTHO05D011704 6.1e-08 61.6 83 43.4
TAR629G1300 Trochodendron aralioides HOM05D009256 ORTHO05D011704 6.1e-08 61.6 83 43.4
EL10Ac4g08000 Beta vulgaris HOM05D000963 ORTHO05D013225 2.3e-07 59.7 44 65.9
FAN08G1097 Fragaria x ananassa HOM05D009256 ORTHO05D011704 2.3e-07 59.7 83 41.0
arahy.Tifrunner.gnm1.ann1.48BVF8 Arachis hypogaea HOM05D012548 ORTHO05D013225 4.0e-07 58.9 87 47.1
arahy.Tifrunner.gnm1.ann1.6JFP0W Arachis hypogaea HOM05D012548 ORTHO05D013225 4.0e-07 58.9 87 47.1
arahy.Tifrunner.gnm1.ann1.M6PUGS Arachis hypogaea HOM05D012548 ORTHO05D013225 4.0e-07 58.9 87 47.1
Sopen10g016580 Solanum pennellii HOM05D000963 ORTHO05D010073 6.7e-07 58.2 52 63.5
Medtr4g091430 Medicago truncatula HOM05D009256 ORTHO05D011704 1.2e-06 57.4 83 41.0
SEGI_06644 Sequoiadendron giganteum HOM05D009256 ORTHO05D011704 1.2e-06 57.4 58 60.3
SEGI_13999 Sequoiadendron giganteum HOM05D009256 ORTHO05D011704 1.2e-06 57.4 58 60.3
SEGI_16475 Sequoiadendron giganteum HOM05D009256 ORTHO05D011704 1.2e-06 57.4 58 60.3
SEGI_23954 Sequoiadendron giganteum HOM05D009256 ORTHO05D011704 1.2e-06 57.4 58 60.3
arahy.Tifrunner.gnm1.ann1.BP3EV9 Arachis hypogaea HOM05D000963 ORTHO05D010073 1.5e-06 57.0 35 77.1
Nn029s41583 Nelumbo nucifera HOM05D012548 ORTHO05D013225 7.5e-06 54.7 27 92.6
Nn064s42220 Nelumbo nucifera HOM05D012548 ORTHO05D013225 7.5e-06 54.7 27 92.6
Nn212s45205 Nelumbo nucifera HOM05D012548 ORTHO05D013225 7.5e-06 54.7 27 92.6
Nn219s45280 Nelumbo nucifera HOM05D012548 ORTHO05D013225 7.5e-06 54.7 27 92.6
Nn264s45949 Nelumbo nucifera HOM05D012548 ORTHO05D013225 7.5e-06 54.7 27 92.6
Nn304s46231 Nelumbo nucifera HOM05D012548 ORTHO05D013225 7.5e-06 54.7 27 92.6
Nn349s46477 Nelumbo nucifera HOM05D012548 ORTHO05D013225 7.5e-06 54.7 27 92.6
Nn403s46570 Nelumbo nucifera HOM05D012548 ORTHO05D013225 7.5e-06 54.7 27 92.6
Nn442s46690 Nelumbo nucifera HOM05D012548 ORTHO05D013225 7.5e-06 54.7 27 92.6
Nn4g25381 Nelumbo nucifera HOM05D012548 ORTHO05D013225 7.5e-06 54.7 27 92.6


User provided reference genes

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