Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 2.9e-310 1067.8 560 100.0
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 3.9e-307 1057.4 560 99.1
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 8.2e-305 1049.7 560 97.7
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 2.6e-282 974.9 565 91.3
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 5.2e-259 897.5 494 94.1
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 2.1e-252 875.5 540 84.3
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 8.9e-251 870.2 585 79.1
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 7.5e-250 867.1 572 79.9
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 2.2e-249 865.5 534 84.6
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.4e-248 862.8 536 83.4
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 3.2e-248 861.7 563 80.8
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 5.4e-248 860.9 553 81.4
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 7.0e-248 860.5 534 84.1
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 1.6e-247 859.4 508 88.0
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 2.0e-247 859.0 527 84.4
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 2.0e-247 859.0 578 79.2
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 2.0e-247 859.0 528 84.1
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 2.7e-247 858.6 529 83.7
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 3.5e-247 858.2 529 83.6
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 4.6e-247 857.8 523 83.9
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 5.9e-247 857.4 547 82.3
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 7.8e-247 857.1 540 83.7
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 7.8e-247 857.1 530 84.2
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 1.3e-246 856.3 551 81.5
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.7e-246 855.9 536 82.8
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 3.9e-246 854.7 538 82.2
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 6.6e-246 854.0 518 84.0
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 6.6e-246 854.0 588 78.1
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.1e-245 853.2 547 83.0
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 2.5e-245 852.0 586 78.3
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 4.3e-245 851.3 533 82.6
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 5.6e-245 850.9 565 79.8
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 7.3e-245 850.5 546 80.4
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 7.3e-245 850.5 541 81.7
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 9.5e-245 850.1 521 85.6
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 1.2e-244 849.7 536 83.6
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.2e-244 849.7 565 79.6
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 1.2e-244 849.7 531 82.9
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 2.1e-244 849.0 523 83.4
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 2.8e-244 848.6 528 84.1
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 3.6e-244 848.2 546 80.2
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 3.6e-244 848.2 564 79.4
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 3.6e-244 848.2 526 83.5
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 4.7e-244 847.8 613 75.5
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 8.0e-244 847.0 543 81.4
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 1.0e-243 846.7 528 82.8
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.4e-243 846.3 528 83.9
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 1.4e-243 846.3 500 86.4
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 5.2e-243 844.3 538 81.8
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 6.8e-243 844.0 546 81.1
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 6.8e-243 844.0 526 83.1
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 8.9e-243 843.6 538 82.0
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 1.2e-242 843.2 546 80.8
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 2.0e-242 842.4 528 82.6
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 2.6e-242 842.0 552 80.6
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 2.6e-242 842.0 510 83.7
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 3.4e-242 841.6 525 82.9
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 5.8e-242 840.9 531 82.1
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 7.5e-242 840.5 514 85.6
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 7.5e-242 840.5 538 81.0
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 9.8e-242 840.1 542 79.5
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 1.7e-241 839.3 531 81.9
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 2.9e-241 838.6 542 80.4
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 2.9e-241 838.6 531 81.4
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 2.9e-241 838.6 541 82.1
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 8.3e-241 837.0 516 84.5
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 8.3e-241 837.0 516 84.3
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 1.4e-240 836.3 560 79.8
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 1.4e-240 836.3 572 76.7
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 1.9e-240 835.9 533 82.2
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 1.9e-240 835.9 526 82.1
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 2.4e-240 835.5 538 81.6
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 7.0e-240 833.9 505 84.2
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 1.2e-239 833.2 529 82.4
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 1.6e-239 832.8 554 78.5
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 2.7e-239 832.0 543 80.1
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 2.7e-239 832.0 530 82.5
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 2.7e-239 832.0 529 82.0
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 3.0e-238 828.6 544 79.4
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 3.9e-238 828.2 493 86.6
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 5.0e-238 827.8 528 81.4
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 5.0e-238 827.8 526 81.4
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.5e-237 826.2 522 81.2
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 3.3e-237 825.1 555 78.6
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 7.3e-237 823.9 527 81.0
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 1.2e-236 823.2 546 79.3
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 2.1e-236 822.4 532 80.1
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 2.1e-236 822.4 544 77.2
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 1.8e-235 819.3 515 83.3
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 5.2e-235 817.8 547 79.3
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 3.4e-234 815.1 539 80.9
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 2.4e-232 808.9 498 83.3
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.2e-232 808.5 536 80.0
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 3.5e-231 805.1 486 85.8
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 2.3e-230 802.4 483 86.5
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.1e-227 793.5 488 84.6
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 1.9e-224 782.7 506 80.6
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 2.3e-222 775.8 546 74.7
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 1.1e-221 773.5 493 82.4
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 4.9e-217 758.1 435 89.9
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 1.9e-216 756.1 466 83.7
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 5.1e-214 748.0 566 73.9
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 3.3e-213 745.3 483 80.3
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.3e-212 743.4 520 74.2
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 4.0e-211 738.4 437 85.6
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 6.4e-209 731.1 458 81.2
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 8.4e-209 730.7 534 74.0
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 4.2e-208 728.4 437 84.4
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 9.3e-208 727.2 537 70.9
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 4.6e-207 724.9 685 60.6
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 5.1e-206 721.5 518 72.2
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 6.2e-204 714.5 436 85.3
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 1.8e-203 713.0 514 71.6
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.5e-194 683.3 472 72.7
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 8.4e-193 677.6 505 68.5
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 6.7e-190 667.9 439 78.6
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 1.4e-184 650.2 397 83.6
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 6.1e-183 644.8 420 78.1
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 3.0e-182 642.5 406 82.0
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 2.2e-180 636.3 427 77.0
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 6.3e-180 634.8 389 84.1
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 1.8e-179 633.3 438 74.0
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 4.1e-179 632.1 421 77.2
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 6.5e-177 624.8 425 75.1
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 8.5e-177 624.4 447 75.4
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 2.2e-164 583.2 531 62.1
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 3.1e-163 579.3 468 68.4
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 2.1e-151 540.0 316 86.7
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 3.0e-150 536.2 503 62.0
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.4e-149 532.7 443 67.9
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 2.0e-141 506.9 331 79.5
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 2.8e-135 486.5 354 70.9
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 5.2e-134 482.3 299 82.6
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 6.8e-134 481.9 391 68.8
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 2.0e-133 480.3 259 96.5
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 3.1e-126 456.4 298 81.2
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 1.5e-125 454.1 269 85.1
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 1.3e-121 441.0 559 45.8
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 1.1e-120 438.0 285 80.4
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 7.1e-91 339.0 484 46.7
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 2.8e-79 300.4 185 81.1
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 1.3e-76 291.6 531 40.5
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 5.5e-75 286.2 213 68.5
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 7.2e-67 259.2 192 71.4
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 2.1e-66 257.7 248 59.7
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 9.4e-59 232.3 144 82.6
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.4e-51 208.4 173 63.6
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 5.5e-51 206.5 193 57.5
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 2.6e-48 197.6 126 78.6
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 9.1e-46 189.1 119 80.7
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.8e-36 157.1 102 77.5
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.6e-34 150.6 111 70.3
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.5e-32 145.2 94 72.3
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 1.8e-30 138.3 109 71.6
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 2.4e-30 137.9 101 76.2
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 3.8e-28 130.6 104 67.3
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 4.7e-26 123.6 78 82.1
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 1.2e-24 119.0 69 85.5
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 7.5e-24 116.3 90 62.2
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 3.1e-22 110.9 79 70.9
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 7.8e-21 106.3 70 78.6
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 3.6e-18 97.4 90 58.9
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 4.1e-14 84.0 53 81.1
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 4.6e-13 80.5 58 69.0
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 3.0e-12 77.8 141 36.2
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 5.6e-11 73.6 49 73.5
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 1.1e-09 69.3 65 52.3
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 4.4e-08 63.9 93 46.2
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 4.4e-08 63.9 57 56.1
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 2.2e-07 61.6 39 82.1


User provided reference genes

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